Wall clock time and date at job start Mon Mar 30 2020 06:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35696 * 116.99573 * 2 1 4 4 C 1.39348 * 119.75902 * 359.97438 * 3 2 1 5 5 C 1.37571 * 120.30583 * 180.02562 * 4 3 2 6 6 F 1.35104 * 120.09814 * 180.02562 * 5 4 3 7 7 C 1.41089 * 119.80285 * 0.02562 * 5 4 3 8 8 C 1.40978 * 120.23762 * 180.02562 * 7 5 4 9 9 H 1.07999 * 119.99588 * 144.64675 * 8 7 5 10 10 C 1.39850 * 120.00153 * 324.65029 * 8 7 5 11 11 N 1.30960 * 120.00131 * 150.97770 * 10 8 7 12 12 Si 1.86801 * 119.99796 * 330.69839 * 10 8 7 13 13 H 1.48502 * 109.47497 * 265.01953 * 12 10 8 14 14 H 1.48507 * 109.46969 * 25.01794 * 12 10 8 15 15 H 1.48501 * 109.47234 * 145.01852 * 12 10 8 16 16 C 1.41380 * 119.51955 * 0.27147 * 7 5 4 17 17 O 1.35685 * 120.15041 * 179.72335 * 16 7 5 18 18 C 1.42897 * 116.99933 * 180.02562 * 17 16 7 19 19 F 1.39905 * 109.46964 * 300.00274 * 18 17 16 20 20 F 1.39897 * 109.47474 * 59.99897 * 18 17 16 21 21 C 1.38066 * 119.69529 * 359.43004 * 16 7 5 22 22 H 1.09005 * 109.47091 * 60.00297 * 1 2 3 23 23 H 1.08999 * 109.46898 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47289 * 300.00460 * 1 2 3 25 25 H 1.08004 * 119.84910 * 0.02562 * 4 3 2 26 26 H 0.96996 * 119.99768 * 179.72346 * 11 10 8 27 27 H 1.08996 * 109.47134 * 180.02562 * 18 17 16 28 28 H 1.08000 * 119.90904 * 180.31232 * 21 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2091 0.0000 4 6 1.2810 2.3745 -0.0005 5 6 1.8937 3.6062 -0.0011 6 9 1.1490 4.7335 -0.0011 7 6 3.3022 3.6888 -0.0016 8 6 3.9397 4.9462 -0.0016 9 1 4.8645 5.0827 0.5392 10 6 3.3745 6.0167 -0.7019 11 7 3.5754 7.2449 -0.2942 12 14 2.3396 5.6952 -2.2234 13 1 3.1905 5.8128 -3.4348 14 1 1.7664 4.3270 -2.1521 15 1 1.2392 6.6899 -2.2929 16 6 4.0696 2.5014 -0.0074 17 8 5.4249 2.5659 -0.0137 18 6 6.1334 1.3249 -0.0199 19 9 5.7972 0.5903 1.1223 20 9 5.7865 0.5955 -1.1622 21 6 3.4336 1.2759 -0.0006 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.2029 2.3105 -0.0005 26 1 3.1867 7.9876 -0.7822 27 1 7.2059 1.5189 -0.0241 28 1 4.0165 0.3667 0.0001 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575659926.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:44 Heat of formation + Delta-G solvation = -219.607858 kcal Electronic energy + Delta-G solvation = -20280.635977 eV Core-core repulsion = 16460.935325 eV Total energy + Delta-G solvation = -3819.700652 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.16130 -49.76413 -48.15992 -40.92716 -39.60548 -37.15917 -35.35849 -32.02492 -31.03754 -28.48555 -27.00804 -26.23753 -23.42553 -22.71257 -20.18800 -19.76978 -19.19527 -18.73355 -18.12973 -17.54500 -17.47123 -16.65799 -16.38756 -16.17210 -16.08026 -15.35600 -15.32373 -15.09888 -14.87601 -14.61547 -14.45792 -14.15019 -13.73127 -13.46066 -13.10553 -12.91396 -12.75418 -12.58719 -12.16600 -11.93322 -11.69247 -11.43110 -10.95064 -9.42145 -9.20196 -8.96564 -6.38742 0.34834 0.51094 1.26280 1.35679 1.40061 1.87792 2.11925 2.40118 2.47066 2.73100 3.07169 3.63551 3.72472 3.85477 4.04554 4.19680 4.28821 4.44510 4.49612 4.61180 4.75964 4.86120 5.12973 5.34383 5.40619 5.77089 5.98204 6.21415 6.46040 6.66420 6.73066 8.10244 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.017168 B = 0.010552 C = 0.007363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.550443 B = 2652.923087 C = 3802.078313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.330 6.330 3 C 0.074 3.926 4 C -0.212 4.212 5 C 0.020 3.980 6 F -0.146 7.146 7 C 0.012 3.988 8 C -0.479 4.479 9 H 0.069 0.931 10 C 0.063 3.937 11 N -0.824 5.824 12 Si 0.954 3.046 13 H -0.278 1.278 14 H -0.255 1.255 15 H -0.265 1.265 16 C 0.060 3.940 17 O -0.318 6.318 18 C 0.401 3.599 19 F -0.212 7.212 20 F -0.212 7.212 21 C -0.194 4.194 22 H 0.055 0.945 23 H 0.125 0.875 24 H 0.057 0.943 25 H 0.148 0.852 26 H 0.294 0.706 27 H 0.233 0.767 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 -11.148 -1.561 11.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.244 6.244 3 C 0.029 3.971 4 C -0.232 4.232 5 C 0.000 4.000 6 F -0.125 7.125 7 C 0.008 3.992 8 C -0.508 4.508 9 H 0.087 0.913 10 C -0.155 4.155 11 N -0.449 5.449 12 Si 0.777 3.223 13 H -0.205 1.205 14 H -0.179 1.179 15 H -0.189 1.189 16 C 0.016 3.984 17 O -0.235 6.235 18 C 0.312 3.688 19 F -0.194 7.194 20 F -0.193 7.193 21 C -0.214 4.214 22 H 0.074 0.926 23 H 0.143 0.857 24 H 0.076 0.924 25 H 0.166 0.834 26 H 0.105 0.895 27 H 0.248 0.752 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.826 -10.869 -1.533 11.008 hybrid contribution -0.657 0.457 -0.362 0.878 sum -1.483 -10.413 -1.895 10.687 Atomic orbital electron populations 1.23270 0.77089 1.05325 1.01693 1.85903 1.22888 1.25712 1.89945 1.17919 0.90824 0.83813 1.04523 1.20869 1.00762 0.90353 1.11199 1.17115 0.88235 0.81560 1.13128 1.91045 1.76084 1.50836 1.94532 1.17062 0.89897 0.92562 0.99633 1.18843 1.09337 0.92303 1.30273 0.91296 1.26689 0.94858 0.93876 1.00048 1.69834 1.37625 1.01045 1.36437 0.85631 0.78466 0.80745 0.77432 1.20514 1.17931 1.18939 1.18318 0.81437 0.92537 1.06109 1.86553 1.17005 1.31233 1.88738 1.24279 0.98897 0.74653 0.70988 1.93043 1.94584 1.78966 1.52833 1.93043 1.94381 1.79176 1.52750 1.20436 0.93393 0.96328 1.11200 0.92596 0.85653 0.92428 0.83424 0.89506 0.75181 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.80 113.37 1.11 1.61 15 2 O -0.33 -11.48 10.48 -90.16 -0.94 -12.42 15 3 C 0.07 3.05 6.70 22.73 0.15 3.20 15 4 C -0.21 -8.91 8.98 22.38 0.20 -8.71 15 5 C 0.02 0.99 5.01 22.81 0.11 1.11 15 6 F -0.15 -7.29 12.86 44.97 0.58 -6.71 15 7 C 0.01 0.63 4.87 -21.13 -0.10 0.52 15 8 C -0.48 -27.14 8.95 23.33 0.21 -26.93 15 9 H 0.07 4.17 8.00 -2.91 -0.02 4.14 15 10 C 0.06 3.44 4.72 85.21 0.40 3.84 15 11 N -0.82 -45.55 13.93 21.82 0.30 -45.24 15 12 Si 0.95 44.55 25.32 68.60 1.74 46.29 15 13 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 14 H -0.26 -12.10 5.45 99.48 0.54 -11.56 15 15 H -0.26 -11.66 7.11 99.48 0.71 -10.95 15 16 C 0.06 2.81 6.51 23.00 0.15 2.96 15 17 O -0.32 -13.17 9.84 -90.03 -0.89 -14.06 15 18 C 0.40 11.73 5.98 113.37 0.68 12.41 15 19 F -0.21 -6.69 15.56 44.97 0.70 -5.99 15 20 F -0.21 -6.66 15.60 44.97 0.70 -5.96 15 21 C -0.19 -8.28 8.18 22.42 0.18 -8.10 15 22 H 0.06 1.29 7.64 -2.38 -0.02 1.27 15 23 H 0.13 2.13 8.14 -2.39 -0.02 2.11 15 24 H 0.06 1.31 7.64 -2.39 -0.02 1.29 15 25 H 0.15 5.18 6.25 -2.91 -0.02 5.16 15 26 H 0.29 14.64 8.30 -92.71 -0.77 13.87 15 27 H 0.23 3.80 8.14 -2.39 -0.02 3.78 15 28 H 0.14 5.42 5.07 -2.91 -0.01 5.40 15 Total: -1.00 -65.74 252.15 6.34 -59.40 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: 1.05 Total: 2.79 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 3.10 Total: -18.09 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.30 Total: -45.24 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -1.83 Total: -26.48 kcal Atomic # 9 Polarization: -20.64 SS G_CDS: 1.98 Total: -18.66 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.74 Total: 46.29 kcal Total: -65.74 6.34 -59.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575659926.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.208 kcal (2) G-P(sol) polarization free energy of solvation -65.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds