Wall clock time and date at job start Mon Mar 30 2020 06:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35788 * 116.99970 * 2 1 4 4 C 1.39399 * 119.84973 * 270.02573 * 3 2 1 5 5 F 1.35103 * 119.90115 * 359.97393 * 4 3 2 6 6 C 1.37600 * 120.19370 * 179.73947 * 4 3 2 7 7 C 1.40861 * 119.88072 * 0.51123 * 6 4 3 8 8 C 1.41191 * 120.14756 * 179.74059 * 7 6 4 9 9 H 1.08003 * 120.00301 * 208.59060 * 8 7 6 10 10 C 1.39870 * 119.99931 * 28.59126 * 8 7 6 11 11 N 1.30895 * 120.00181 * 198.01307 * 10 8 7 12 12 Si 1.86800 * 119.99921 * 18.01081 * 10 8 7 13 13 H 1.48503 * 109.46841 * 270.00033 * 12 10 8 14 14 H 1.48494 * 109.47244 * 30.00076 * 12 10 8 15 15 H 1.48503 * 109.47122 * 150.00292 * 12 10 8 16 16 C 1.40775 * 119.70707 * 359.46697 * 7 6 4 17 17 C 1.37828 * 119.80397 * 0.28002 * 16 7 6 18 18 O 1.35973 * 119.94587 * 180.02562 * 17 16 7 19 19 C 1.42901 * 116.99748 * 359.97438 * 18 17 16 20 20 F 1.39896 * 109.47347 * 300.00512 * 19 18 17 21 21 F 1.39900 * 109.47132 * 60.00582 * 19 18 17 22 22 H 1.08999 * 109.46517 * 299.99681 * 1 2 3 23 23 H 1.09000 * 109.47271 * 59.99751 * 1 2 3 24 24 H 1.09001 * 109.46573 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.06046 * 180.27983 * 6 4 3 26 26 H 0.96999 * 119.99658 * 355.44259 * 11 10 8 27 27 H 1.07998 * 120.10140 * 180.24734 * 16 7 6 28 28 H 1.09002 * 109.46814 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 2.3599 1.8283 -1.2091 5 9 2.0510 1.2219 -2.3761 6 6 2.9798 3.0568 -1.2173 7 6 3.3070 3.6859 -0.0002 8 6 3.9480 4.9440 -0.0022 9 1 4.5960 5.2212 0.8162 10 6 3.7437 5.8313 -1.0639 11 7 4.5776 6.8212 -1.2593 12 14 2.2810 5.6036 -2.2032 13 1 2.6686 4.7262 -3.3370 14 1 1.1622 4.9783 -1.4534 15 1 1.8496 6.9253 -2.7251 16 6 2.9868 3.0575 1.2181 17 6 2.3612 1.8294 1.2118 18 8 2.0502 1.2201 2.3869 19 6 2.4015 1.9097 3.5881 20 9 3.7856 2.1099 3.6232 21 9 1.7503 3.1475 3.6227 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 3.2184 3.5361 -2.1553 26 1 5.2988 6.9791 -0.6301 27 1 3.2311 3.5360 2.1550 28 1 2.0987 1.3153 4.4501 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575659945.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:46 Heat of formation + Delta-G solvation = -215.822032 kcal Electronic energy + Delta-G solvation = -20225.609468 eV Core-core repulsion = 16406.072981 eV Total energy + Delta-G solvation = -3819.536487 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.97502 -48.08444 -46.97540 -39.33106 -37.25045 -36.45225 -33.59658 -29.93487 -29.18789 -26.75713 -25.92482 -24.27304 -21.96052 -21.06585 -19.13794 -17.99761 -17.69011 -17.54463 -16.87788 -16.08488 -15.53218 -15.34823 -14.72873 -14.27177 -14.19619 -13.95902 -13.70735 -13.57905 -13.38570 -13.16789 -13.10741 -12.87894 -12.26113 -11.84889 -11.66628 -11.26311 -11.02099 -10.78687 -10.43131 -10.03661 -9.80735 -9.29656 -9.11969 -7.89396 -7.65068 -7.47837 -4.88174 2.08032 2.20988 2.97444 3.07737 3.20484 3.41529 3.78426 3.83365 4.02199 4.57225 4.60770 4.90531 5.05256 5.30234 5.73195 5.80998 5.90150 5.97753 6.06812 6.14271 6.38589 6.72750 7.06023 7.21747 7.32594 7.38362 7.47605 7.92267 8.11499 8.37012 8.47319 9.71745 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.010144 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.483616 B = 2759.680641 C = 3946.219284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.312 6.312 3 C -0.098 4.098 4 C 0.158 3.842 5 F -0.146 7.146 6 C -0.291 4.291 7 C 0.135 3.865 8 C -0.486 4.486 9 H 0.086 0.914 10 C 0.043 3.957 11 N -0.793 5.793 12 Si 1.069 2.931 13 H -0.271 1.271 14 H -0.260 1.260 15 H -0.283 1.283 16 C -0.283 4.283 17 C 0.151 3.849 18 O -0.320 6.320 19 C 0.411 3.589 20 F -0.200 7.200 21 F -0.200 7.200 22 H 0.037 0.963 23 H 0.035 0.965 24 H 0.079 0.921 25 H 0.126 0.874 26 H 0.291 0.709 27 H 0.123 0.877 28 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.660 -6.311 5.809 10.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C -0.144 4.144 4 C 0.138 3.862 5 F -0.124 7.124 6 C -0.311 4.311 7 C 0.131 3.869 8 C -0.513 4.513 9 H 0.104 0.896 10 C -0.179 4.179 11 N -0.414 5.414 12 Si 0.894 3.106 13 H -0.197 1.197 14 H -0.185 1.185 15 H -0.210 1.210 16 C -0.303 4.303 17 C 0.108 3.892 18 O -0.237 6.237 19 C 0.321 3.679 20 F -0.182 7.182 21 F -0.182 7.182 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.098 0.902 25 H 0.144 0.856 26 H 0.103 0.897 27 H 0.140 0.860 28 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -6.274 -5.944 4.467 9.729 hybrid contribution 0.864 -0.147 1.389 1.642 sum -5.410 -6.092 5.856 10.033 Atomic orbital electron populations 1.22963 0.82586 1.01443 0.99768 1.86134 1.17984 1.24744 1.93995 1.17043 1.15989 0.93044 0.88334 1.17364 0.98211 0.91233 0.79404 1.91388 1.91170 1.83410 1.46465 1.21044 1.14211 0.96188 0.99614 1.17224 0.87592 0.92838 0.89280 1.20717 1.23806 0.99310 1.07447 0.89612 1.27443 1.00682 0.92481 0.97332 1.70559 1.10627 1.27643 1.32535 0.83636 0.74928 0.76028 0.76006 1.19749 1.18468 1.21034 1.21327 1.12757 0.96537 0.99678 1.18673 0.96568 0.91284 0.82681 1.86553 1.77882 1.46509 1.12764 1.23205 0.74164 0.80057 0.90496 1.93086 1.33077 1.95392 1.96650 1.93091 1.81124 1.47337 1.96655 0.94418 0.94602 0.90200 0.85643 0.89714 0.85969 0.81201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.13 101.05 1.12 1.59 15 2 O -0.31 -6.65 10.04 -33.73 -0.34 -6.99 15 3 C -0.10 -2.26 5.77 -38.60 -0.22 -2.49 15 4 C 0.16 3.72 7.29 -39.38 -0.29 3.44 15 5 F -0.15 -3.27 17.10 2.25 0.04 -3.23 15 6 C -0.29 -7.09 7.24 -38.82 -0.28 -7.37 15 7 C 0.13 3.38 5.14 -106.83 -0.55 2.83 15 8 C -0.49 -12.50 9.42 -37.85 -0.36 -12.86 15 9 H 0.09 2.25 8.06 -52.48 -0.42 1.83 15 10 C 0.04 1.08 5.41 -17.34 -0.09 0.98 15 11 N -0.79 -20.15 13.66 55.54 0.76 -19.39 15 12 Si 1.07 23.49 24.90 -169.99 -4.23 19.26 15 13 H -0.27 -5.73 6.42 56.52 0.36 -5.37 15 14 H -0.26 -5.71 7.04 56.52 0.40 -5.32 15 15 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 16 C -0.28 -6.66 7.99 -38.77 -0.31 -6.97 15 17 C 0.15 3.39 6.49 -39.18 -0.25 3.13 15 18 O -0.32 -6.05 10.21 -34.31 -0.35 -6.40 15 19 C 0.41 6.12 5.98 101.05 0.60 6.73 15 20 F -0.20 -3.39 15.58 2.25 0.04 -3.35 15 21 F -0.20 -3.35 15.58 2.25 0.04 -3.31 15 22 H 0.04 0.61 8.14 -51.93 -0.42 0.18 15 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.13 3.00 4.37 -52.49 -0.23 2.77 15 26 H 0.29 7.13 8.73 -40.82 -0.36 6.78 15 27 H 0.12 2.78 5.06 -52.49 -0.27 2.52 15 28 H 0.17 1.48 8.14 -51.93 -0.42 1.06 15 LS Contribution 258.27 15.07 3.89 3.89 Total: -1.00 -28.21 258.27 -2.59 -30.80 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -1.80 Total: -0.29 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -0.63 Total: -10.99 kcal Atomic # 7 Polarization: -20.15 SS G_CDS: 0.76 Total: -19.39 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.69 Total: -13.38 kcal Atomic # 9 Polarization: -10.01 SS G_CDS: 0.11 Total: -9.90 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -4.23 Total: 19.26 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.21 -2.59 -30.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575659945.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.021 kcal (2) G-P(sol) polarization free energy of solvation -28.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds