Wall clock time and date at job start Mon Mar 30 2020 06:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35788 * 116.99970 * 2 1 4 4 C 1.39399 * 119.84973 * 270.02573 * 3 2 1 5 5 F 1.35103 * 119.90115 * 359.97393 * 4 3 2 6 6 C 1.37600 * 120.19370 * 179.73947 * 4 3 2 7 7 C 1.40861 * 119.88072 * 0.51123 * 6 4 3 8 8 C 1.41191 * 120.14756 * 179.74059 * 7 6 4 9 9 H 1.08003 * 120.00301 * 208.59060 * 8 7 6 10 10 C 1.39870 * 119.99931 * 28.59126 * 8 7 6 11 11 N 1.30895 * 120.00181 * 198.01307 * 10 8 7 12 12 Si 1.86800 * 119.99921 * 18.01081 * 10 8 7 13 13 H 1.48503 * 109.46841 * 270.00033 * 12 10 8 14 14 H 1.48494 * 109.47244 * 30.00076 * 12 10 8 15 15 H 1.48503 * 109.47122 * 150.00292 * 12 10 8 16 16 C 1.40775 * 119.70707 * 359.46697 * 7 6 4 17 17 C 1.37828 * 119.80397 * 0.28002 * 16 7 6 18 18 O 1.35973 * 119.94587 * 180.02562 * 17 16 7 19 19 C 1.42901 * 116.99748 * 359.97438 * 18 17 16 20 20 F 1.39896 * 109.47347 * 300.00512 * 19 18 17 21 21 F 1.39900 * 109.47132 * 60.00582 * 19 18 17 22 22 H 1.08999 * 109.46517 * 299.99681 * 1 2 3 23 23 H 1.09000 * 109.47271 * 59.99751 * 1 2 3 24 24 H 1.09001 * 109.46573 * 180.02562 * 1 2 3 25 25 H 1.08001 * 120.06046 * 180.27983 * 6 4 3 26 26 H 0.96999 * 119.99658 * 355.44259 * 11 10 8 27 27 H 1.07998 * 120.10140 * 180.24734 * 16 7 6 28 28 H 1.09002 * 109.46814 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2099 0.0000 4 6 2.3599 1.8283 -1.2091 5 9 2.0510 1.2219 -2.3761 6 6 2.9798 3.0568 -1.2173 7 6 3.3070 3.6859 -0.0002 8 6 3.9480 4.9440 -0.0022 9 1 4.5960 5.2212 0.8162 10 6 3.7437 5.8313 -1.0639 11 7 4.5776 6.8212 -1.2593 12 14 2.2810 5.6036 -2.2032 13 1 2.6686 4.7262 -3.3370 14 1 1.1622 4.9783 -1.4534 15 1 1.8496 6.9253 -2.7251 16 6 2.9868 3.0575 1.2181 17 6 2.3612 1.8294 1.2118 18 8 2.0502 1.2201 2.3869 19 6 2.4015 1.9097 3.5881 20 9 3.7856 2.1099 3.6232 21 9 1.7503 3.1475 3.6227 22 1 -0.3632 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3632 -1.0277 0.0005 25 1 3.2184 3.5361 -2.1553 26 1 5.2988 6.9791 -0.6301 27 1 3.2311 3.5360 2.1550 28 1 2.0987 1.3153 4.4501 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575659945.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:46 Heat of formation + Delta-G solvation = -233.565524 kcal Electronic energy + Delta-G solvation = -20226.378884 eV Core-core repulsion = 16406.072981 eV Total energy + Delta-G solvation = -3820.305902 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.24835 -49.89361 -48.26059 -41.00815 -38.82023 -38.22840 -35.45666 -31.73367 -30.97848 -28.28284 -27.30307 -25.98455 -23.65776 -22.87016 -20.86999 -19.51388 -19.28819 -18.84001 -18.52607 -17.74150 -17.20978 -17.04143 -16.41927 -15.95211 -15.87962 -15.47360 -15.31427 -15.19689 -14.75656 -14.73332 -14.56016 -14.54601 -13.70804 -13.50706 -13.28302 -12.97178 -12.64331 -12.38427 -12.22725 -11.81293 -11.61693 -11.04506 -10.80656 -9.77742 -9.48123 -9.34000 -6.83472 0.24152 0.37163 1.31468 1.44205 1.61021 1.69789 2.05909 2.21604 2.60437 2.87760 3.11054 3.47541 3.59059 3.73325 4.10777 4.22581 4.29933 4.50710 4.51922 4.56525 4.74949 4.92324 5.21352 5.27640 5.44269 5.57086 5.72991 6.05416 6.18120 6.50166 6.73424 7.79725 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.010144 C = 0.007094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.483616 B = 2759.680641 C = 3946.219284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.327 6.327 3 C -0.090 4.090 4 C 0.149 3.851 5 F -0.139 7.139 6 C -0.299 4.299 7 C 0.123 3.877 8 C -0.515 4.515 9 H 0.065 0.935 10 C 0.020 3.980 11 N -0.814 5.814 12 Si 1.092 2.908 13 H -0.258 1.258 14 H -0.262 1.262 15 H -0.268 1.268 16 C -0.290 4.290 17 C 0.155 3.845 18 O -0.320 6.320 19 C 0.403 3.597 20 F -0.214 7.214 21 F -0.212 7.212 22 H 0.044 0.956 23 H 0.036 0.964 24 H 0.117 0.883 25 H 0.128 0.872 26 H 0.287 0.713 27 H 0.124 0.876 28 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.294 -8.082 6.339 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.243 6.243 3 C -0.135 4.135 4 C 0.129 3.871 5 F -0.118 7.118 6 C -0.319 4.319 7 C 0.119 3.881 8 C -0.543 4.543 9 H 0.083 0.917 10 C -0.198 4.198 11 N -0.435 5.435 12 Si 0.912 3.088 13 H -0.184 1.184 14 H -0.186 1.186 15 H -0.194 1.194 16 C -0.310 4.310 17 C 0.111 3.889 18 O -0.238 6.238 19 C 0.314 3.686 20 F -0.196 7.196 21 F -0.194 7.194 22 H 0.063 0.937 23 H 0.055 0.945 24 H 0.135 0.865 25 H 0.145 0.855 26 H 0.098 0.902 27 H 0.142 0.858 28 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -7.902 -7.718 5.012 12.130 hybrid contribution 1.284 0.176 1.367 1.883 sum -6.618 -7.541 6.379 11.890 Atomic orbital electron populations 1.23225 0.79601 1.04130 1.00166 1.86061 1.20608 1.23654 1.94026 1.17238 1.15025 0.92925 0.88358 1.17449 0.98444 0.91191 0.80043 1.91396 1.91081 1.83184 1.46132 1.21089 1.14639 0.96721 0.99462 1.17367 0.87742 0.92748 0.90248 1.20657 1.25356 1.00486 1.07790 0.91671 1.28264 1.01650 0.91892 0.98013 1.70603 1.11332 1.28559 1.33014 0.83368 0.73034 0.76973 0.75403 1.18416 1.18634 1.19414 1.21414 1.12968 0.97314 0.99336 1.18645 0.95426 0.90662 0.84190 1.86558 1.77634 1.46925 1.12657 1.24423 0.73322 0.80289 0.90549 1.93061 1.34454 1.95490 1.96565 1.93068 1.81250 1.48506 1.96560 0.93727 0.94504 0.86476 0.85495 0.90183 0.85789 0.74076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 11.13 113.37 1.26 1.95 15 2 O -0.33 -12.96 10.04 -77.16 -0.77 -13.73 15 3 C -0.09 -3.95 5.77 22.91 0.13 -3.82 15 4 C 0.15 6.82 7.29 22.40 0.16 6.98 15 5 F -0.14 -6.01 17.10 44.97 0.77 -5.24 15 6 C -0.30 -14.46 7.24 22.76 0.16 -14.30 15 7 C 0.12 6.19 5.14 -21.29 -0.11 6.08 15 8 C -0.52 -27.31 9.42 23.39 0.22 -27.09 15 9 H 0.07 3.60 8.06 -2.91 -0.02 3.58 15 10 C 0.02 1.02 5.41 85.23 0.46 1.48 15 11 N -0.81 -42.28 13.66 21.82 0.30 -41.98 15 12 Si 1.09 46.96 24.90 68.60 1.71 48.67 15 13 H -0.26 -10.52 6.42 99.48 0.64 -9.88 15 14 H -0.26 -11.23 7.04 99.48 0.70 -10.53 15 15 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 16 C -0.29 -13.57 7.99 22.79 0.18 -13.38 15 17 C 0.16 6.68 6.49 22.53 0.15 6.83 15 18 O -0.32 -11.20 10.21 -79.24 -0.81 -12.01 15 19 C 0.40 10.76 5.98 113.37 0.68 11.44 15 20 F -0.21 -6.85 15.58 44.97 0.70 -6.15 15 21 F -0.21 -6.66 15.58 44.97 0.70 -5.96 15 22 H 0.04 1.28 8.14 -2.39 -0.02 1.26 15 23 H 0.04 1.10 8.14 -2.39 -0.02 1.08 15 24 H 0.12 2.64 8.14 -2.39 -0.02 2.62 15 25 H 0.13 6.01 4.37 -2.91 -0.01 6.00 15 26 H 0.29 14.61 8.73 -92.71 -0.81 13.80 15 27 H 0.12 5.66 5.06 -2.91 -0.01 5.64 15 28 H 0.24 2.93 8.14 -2.39 -0.02 2.91 15 Total: -1.00 -60.84 258.27 7.00 -53.84 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: 1.11 Total: 6.39 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: 3.30 Total: -23.83 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.30 Total: -41.98 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -1.58 Total: -25.74 kcal Atomic # 9 Polarization: -19.52 SS G_CDS: 2.17 Total: -17.35 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.71 Total: 48.67 kcal Total: -60.84 7.00 -53.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575659945.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.724 kcal (2) G-P(sol) polarization free energy of solvation -60.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds