Wall clock time and date at job start Mon Mar 30 2020 06:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35749 * 117.00443 * 2 1 4 4 C 1.38636 * 120.15773 * 89.99808 * 3 2 1 5 5 F 1.35101 * 119.90399 * 359.97438 * 4 3 2 6 6 C 1.38376 * 120.18921 * 179.97438 * 4 3 2 7 7 C 1.39342 * 120.50951 * 0.02562 * 6 4 3 8 8 O 1.35943 * 119.84023 * 180.02562 * 7 6 4 9 9 C 1.42910 * 116.99958 * 359.97438 * 8 7 6 10 10 F 1.39894 * 109.46930 * 300.00297 * 9 8 7 11 11 F 1.39890 * 109.46991 * 60.00485 * 9 8 7 12 12 C 1.37879 * 120.31653 * 0.27319 * 7 6 4 13 13 C 1.40738 * 119.80090 * 359.44256 * 12 7 6 14 14 C 1.41156 * 120.24666 * 180.31263 * 13 12 7 15 15 H 1.08003 * 119.99619 * 154.49989 * 14 13 12 16 16 C 1.39904 * 120.00138 * 334.50530 * 14 13 12 17 17 N 1.30880 * 120.00203 * 343.32123 * 16 14 13 18 18 Si 1.86797 * 120.00175 * 163.32409 * 16 14 13 19 19 H 1.48506 * 109.46924 * 59.99602 * 18 16 14 20 20 H 1.48500 * 109.47583 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47534 * 299.99716 * 18 16 14 22 22 H 1.08997 * 109.46787 * 299.99922 * 1 2 3 23 23 H 1.09006 * 109.46861 * 59.99595 * 1 2 3 24 24 H 1.08997 * 109.47445 * 179.97438 * 1 2 3 25 25 H 1.07995 * 119.74612 * 180.02562 * 6 4 3 26 26 H 1.08999 * 109.47051 * 180.02562 * 9 8 7 27 27 H 1.08001 * 120.09840 * 179.72796 * 12 7 6 28 28 H 0.96991 * 120.00328 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2095 0.0000 4 6 2.3616 1.8300 1.1987 5 9 2.0550 1.2296 2.3694 6 6 2.9904 3.0627 1.1995 7 6 3.3119 3.6935 -0.0006 8 8 3.9301 4.9042 0.0160 9 6 4.2180 5.4681 1.2972 10 9 3.0258 5.6449 2.0074 11 9 5.0604 4.6062 2.0073 12 6 3.0016 3.0981 -1.2049 13 6 2.3675 1.8418 -1.2211 14 6 2.0514 1.2206 -2.4486 15 1 1.9600 0.1458 -2.5021 16 6 1.8568 1.9972 -3.5959 17 7 1.6424 3.2837 -3.4867 18 14 1.9028 1.1981 -5.2837 19 1 0.8440 0.1603 -5.3690 20 1 1.6696 2.2294 -6.3264 21 1 3.2308 0.5690 -5.4975 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.2338 3.5395 2.1374 26 1 4.7097 6.4322 1.1676 27 1 3.2485 3.5922 -2.1329 28 1 1.5071 3.8221 -4.2821 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575659992.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:57 Heat of formation + Delta-G solvation = -214.457194 kcal Electronic energy + Delta-G solvation = -20052.608625 eV Core-core repulsion = 16233.131322 eV Total energy + Delta-G solvation = -3819.477303 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.88230 -47.83982 -46.88420 -38.86375 -37.61075 -35.38291 -33.61470 -29.73847 -28.62330 -26.49720 -25.37029 -24.91611 -21.62630 -21.01970 -18.68042 -17.84019 -17.43933 -17.01424 -16.54376 -15.76194 -15.47729 -14.94390 -14.70049 -14.16687 -13.98489 -13.83737 -13.48362 -13.31809 -13.11826 -13.07639 -12.96588 -12.59510 -11.93002 -11.69467 -11.49839 -11.24671 -10.99827 -10.66376 -10.50440 -10.13550 -10.05212 -9.32888 -8.79533 -7.69452 -7.21187 -6.96898 -4.67512 2.38682 2.49366 2.95882 2.97927 3.04332 3.24205 3.75415 3.92367 4.22475 4.72603 4.83010 5.06774 5.38380 5.39755 6.00930 6.11903 6.20036 6.24954 6.39630 6.62955 6.86468 6.97337 7.11937 7.22346 7.52669 7.64988 8.00807 8.20112 8.42275 8.54183 8.88624 9.88406 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.019484 B = 0.008262 C = 0.006203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.751310 B = 3388.302599 C = 4512.576034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.317 6.317 3 C -0.080 4.080 4 C 0.139 3.861 5 F -0.155 7.155 6 C -0.336 4.336 7 C 0.132 3.868 8 O -0.323 6.323 9 C 0.411 3.589 10 F -0.204 7.204 11 F -0.204 7.204 12 C -0.178 4.178 13 C 0.138 3.862 14 C -0.429 4.429 15 H 0.093 0.907 16 C 0.072 3.928 17 N -0.775 5.775 18 Si 0.919 3.081 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.259 1.259 22 H 0.027 0.973 23 H 0.045 0.955 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.169 0.831 27 H 0.138 0.862 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.774 3.538 2.144 4.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.234 6.234 3 C -0.126 4.126 4 C 0.119 3.881 5 F -0.133 7.133 6 C -0.356 4.356 7 C 0.090 3.910 8 O -0.241 6.241 9 C 0.320 3.680 10 F -0.186 7.186 11 F -0.186 7.186 12 C -0.198 4.198 13 C 0.134 3.866 14 C -0.456 4.456 15 H 0.111 0.889 16 C -0.149 4.149 17 N -0.398 5.398 18 Si 0.742 3.258 19 H -0.186 1.186 20 H -0.201 1.201 21 H -0.184 1.184 22 H 0.046 0.954 23 H 0.064 0.936 24 H 0.092 0.908 25 H 0.136 0.864 26 H 0.185 0.815 27 H 0.155 0.845 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.821 3.651 1.918 4.508 hybrid contribution -0.376 -0.116 -0.086 0.403 sum 1.445 3.535 1.831 4.235 Atomic orbital electron populations 1.22826 0.82638 1.00900 0.99828 1.86008 1.17888 1.25348 1.94110 1.18505 1.10831 0.92565 0.90709 1.17492 0.99452 0.91323 0.79789 1.91347 1.91433 1.83474 1.47083 1.20428 1.19056 0.99200 0.96937 1.18392 0.95049 0.83068 0.94502 1.86567 1.74943 1.34831 1.27760 1.23137 0.77001 0.91659 0.76213 1.93066 1.50020 1.95643 1.79850 1.93063 1.71549 1.74130 1.79868 1.20537 1.06257 0.98336 0.94651 1.17324 0.88059 0.89678 0.91519 1.19561 1.38965 0.95745 0.91329 0.88858 1.26098 0.91929 0.94659 1.02173 1.69826 1.30422 1.06712 1.32814 0.86175 0.80426 0.79768 0.79423 1.18641 1.20075 1.18359 0.95384 0.93602 0.90771 0.86403 0.81478 0.84484 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.13 101.05 1.12 1.79 15 2 O -0.32 -7.72 9.57 -18.96 -0.18 -7.90 15 3 C -0.08 -2.06 5.76 -38.30 -0.22 -2.29 15 4 C 0.14 3.47 7.29 -39.38 -0.29 3.19 15 5 F -0.15 -3.70 17.10 2.25 0.04 -3.66 15 6 C -0.34 -7.99 8.23 -39.12 -0.32 -8.31 15 7 C 0.13 3.14 6.47 -39.30 -0.25 2.88 15 8 O -0.32 -6.51 10.42 -19.56 -0.20 -6.72 15 9 C 0.41 6.41 5.98 101.05 0.60 7.01 15 10 F -0.20 -3.53 15.57 2.25 0.04 -3.50 15 11 F -0.20 -3.49 15.57 2.25 0.04 -3.45 15 12 C -0.18 -4.51 8.60 -38.77 -0.33 -4.85 15 13 C 0.14 3.61 5.58 -106.71 -0.59 3.02 15 14 C -0.43 -10.81 8.71 -37.85 -0.33 -11.14 15 15 H 0.09 2.32 7.66 -52.48 -0.40 1.92 15 16 C 0.07 1.69 5.15 -17.33 -0.09 1.60 15 17 N -0.77 -18.57 10.95 55.55 0.61 -17.96 15 18 Si 0.92 17.43 29.59 -169.99 -5.03 12.40 15 19 H -0.26 -4.93 7.11 56.52 0.40 -4.53 15 20 H -0.28 -5.07 7.11 56.52 0.40 -4.66 15 21 H -0.26 -4.91 7.11 56.52 0.40 -4.51 15 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 15 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 15 24 H 0.07 1.24 8.14 -51.93 -0.42 0.81 15 25 H 0.12 2.64 5.05 -52.49 -0.27 2.38 15 26 H 0.17 1.59 8.14 -51.93 -0.42 1.17 15 27 H 0.14 3.52 6.19 -52.49 -0.32 3.20 15 28 H 0.29 6.23 8.30 -40.82 -0.34 5.89 15 LS Contribution 262.75 15.07 3.96 3.96 Total: -1.00 -28.37 262.75 -3.26 -31.63 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -1.82 Total: 2.30 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -0.70 Total: -7.09 kcal Atomic # 7 Polarization: -18.57 SS G_CDS: 0.61 Total: -17.96 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.39 Total: -14.62 kcal Atomic # 9 Polarization: -10.72 SS G_CDS: 0.11 Total: -10.61 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.40 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.37 -3.26 -31.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575659992.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.831 kcal (2) G-P(sol) polarization free energy of solvation -28.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds