Wall clock time and date at job start Mon Mar 30 2020 06:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35965 * 117.00064 * 2 1 4 4 C 1.38852 * 119.91457 * 359.97438 * 3 2 1 5 5 C 1.39140 * 120.43307 * 180.02562 * 4 3 2 6 6 O 1.35930 * 119.87567 * 180.02562 * 5 4 3 7 7 C 1.42905 * 116.99832 * 0.02562 * 6 5 4 8 8 F 1.39905 * 109.46618 * 299.99737 * 7 6 5 9 9 F 1.39893 * 109.47006 * 59.99477 * 7 6 5 10 10 C 1.38038 * 120.25528 * 359.70266 * 5 4 3 11 11 C 1.40707 * 119.82083 * 0.56948 * 10 5 4 12 12 C 1.41307 * 120.20860 * 179.72434 * 11 10 5 13 13 H 1.07999 * 120.00150 * 208.56406 * 12 11 10 14 14 C 1.39920 * 120.00153 * 28.56277 * 12 11 10 15 15 N 1.30852 * 119.99815 * 197.88042 * 14 12 11 16 16 Si 1.86796 * 119.99707 * 17.88367 * 14 12 11 17 17 H 1.48499 * 109.47213 * 269.99685 * 16 14 12 18 18 H 1.48504 * 109.47542 * 29.99948 * 16 14 12 19 19 H 1.48506 * 109.47240 * 149.99860 * 16 14 12 20 20 C 1.38440 * 119.91485 * 180.02562 * 3 2 1 21 21 F 1.35106 * 120.12953 * 359.97438 * 20 3 2 22 22 H 1.09005 * 109.46449 * 299.99822 * 1 2 3 23 23 H 1.08996 * 109.46914 * 60.00086 * 1 2 3 24 24 H 1.08997 * 109.47382 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.78844 * 0.02562 * 4 3 2 26 26 H 1.08999 * 109.47076 * 180.02562 * 7 6 5 27 27 H 1.07996 * 120.09202 * 180.28050 * 10 5 4 28 28 H 0.96991 * 120.00393 * 355.45020 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2883 2.3748 -0.0005 5 6 1.9088 3.6202 -0.0011 6 8 1.1557 4.7519 -0.0011 7 6 -0.2637 4.5865 0.0001 8 9 -0.6514 3.8770 -1.1417 9 9 -0.6497 3.8780 1.1429 10 6 3.2862 3.7111 0.0051 11 6 4.0647 2.5391 -0.0002 12 6 5.4754 2.6226 0.0002 13 1 6.0630 1.8365 -0.4505 14 6 6.1109 3.7237 0.5845 15 7 7.3585 3.9895 0.2932 16 14 5.1782 4.8141 1.7805 17 1 4.5106 5.9103 1.0336 18 1 4.1558 4.0063 2.4929 19 1 6.1267 5.3926 2.7660 20 6 3.4289 1.2818 -0.0005 21 9 4.1656 0.1493 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.2101 2.3127 -0.0005 26 1 -0.7435 5.5653 -0.0005 27 1 3.7650 4.6791 0.0092 28 1 7.8628 3.3870 -0.2755 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575660000.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:48 Heat of formation + Delta-G solvation = -216.063191 kcal Electronic energy + Delta-G solvation = -20219.305331 eV Core-core repulsion = 16399.758387 eV Total energy + Delta-G solvation = -3819.546944 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.08954 -47.27972 -47.08766 -39.36348 -38.13904 -36.06868 -33.56748 -30.09432 -29.12183 -27.08177 -25.36584 -24.99254 -21.84437 -20.92238 -19.04110 -18.25234 -17.65162 -17.64212 -16.53286 -16.24465 -15.49109 -15.34039 -14.91159 -14.17355 -14.08873 -13.96625 -13.62972 -13.52185 -13.32518 -13.23375 -13.11153 -12.96040 -12.28096 -11.83296 -11.47026 -11.26537 -11.06633 -10.87279 -10.61381 -10.02282 -9.83984 -9.68800 -9.11552 -7.92140 -7.48403 -7.11658 -4.81621 2.25388 2.36253 3.01616 3.13875 3.27404 3.48994 3.70936 3.86675 3.90059 4.22209 4.53964 4.85221 5.08035 5.42135 5.52021 5.53238 5.71789 5.78637 5.95753 6.15848 6.56913 6.92134 7.01431 7.10212 7.32490 7.39104 7.58003 7.92425 8.15495 8.34403 8.46498 9.78581 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.009637 C = 0.006977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.092431 B = 2904.759965 C = 4012.248594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.318 6.318 3 C 0.157 3.843 4 C -0.372 4.372 5 C 0.166 3.834 6 O -0.324 6.324 7 C 0.411 3.589 8 F -0.203 7.203 9 F -0.203 7.203 10 C -0.268 4.268 11 C 0.118 3.882 12 C -0.485 4.485 13 H 0.088 0.912 14 C 0.045 3.955 15 N -0.795 5.795 16 Si 1.072 2.928 17 H -0.270 1.270 18 H -0.260 1.260 19 H -0.285 1.285 20 C -0.061 4.061 21 F -0.150 7.150 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.090 0.910 25 H 0.125 0.875 26 H 0.172 0.828 27 H 0.127 0.873 28 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.826 2.045 0.573 13.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.231 6.231 3 C 0.112 3.888 4 C -0.393 4.393 5 C 0.123 3.877 6 O -0.242 6.242 7 C 0.320 3.680 8 F -0.185 7.185 9 F -0.185 7.185 10 C -0.288 4.288 11 C 0.113 3.887 12 C -0.512 4.512 13 H 0.106 0.894 14 C -0.177 4.177 15 N -0.415 5.415 16 Si 0.897 3.103 17 H -0.197 1.197 18 H -0.184 1.184 19 H -0.213 1.213 20 C -0.082 4.082 21 F -0.130 7.130 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.109 0.891 25 H 0.143 0.857 26 H 0.189 0.811 27 H 0.144 0.856 28 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.398 3.305 1.437 12.911 hybrid contribution -0.443 -1.777 -1.148 2.161 sum -12.841 1.528 0.288 12.935 Atomic orbital electron populations 1.22896 0.79608 1.02624 1.01112 1.86069 1.20487 1.27333 1.89238 1.18411 0.90242 0.83732 0.96447 1.20556 0.98927 0.90846 1.28922 1.18264 0.90225 0.82938 0.96283 1.86566 1.16051 1.32755 1.88807 1.23197 0.81644 0.91334 0.71787 1.93068 1.90970 1.82174 1.52305 1.93066 1.91000 1.82208 1.52208 1.20157 0.89149 0.98672 1.20820 1.17190 0.93891 0.88143 0.89457 1.20651 0.90963 1.07473 1.32154 0.89362 1.27435 0.96475 0.96589 0.97234 1.70537 1.10130 1.33641 1.27205 0.83610 0.74931 0.76166 0.75628 1.19667 1.18426 1.21250 1.16961 0.84704 0.82844 1.23680 1.91295 1.77101 1.48987 1.95574 0.93115 0.93144 0.89123 0.85715 0.81126 0.85588 0.89729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.81 101.05 0.99 1.50 15 2 O -0.32 -6.73 10.35 -19.63 -0.20 -6.94 15 3 C 0.16 3.70 6.68 -39.28 -0.26 3.44 15 4 C -0.37 -8.08 7.26 -39.02 -0.28 -8.36 15 5 C 0.17 3.68 6.47 -39.32 -0.25 3.43 15 6 O -0.32 -6.01 10.42 -19.52 -0.20 -6.21 15 7 C 0.41 5.67 5.98 101.05 0.60 6.27 15 8 F -0.20 -3.07 15.57 2.25 0.04 -3.03 15 9 F -0.20 -3.07 15.57 2.25 0.04 -3.03 15 10 C -0.27 -6.52 7.20 -38.72 -0.28 -6.80 15 11 C 0.12 3.08 5.14 -106.80 -0.55 2.53 15 12 C -0.49 -13.09 9.13 -37.79 -0.34 -13.43 15 13 H 0.09 2.48 7.95 -52.49 -0.42 2.06 15 14 C 0.04 1.15 5.41 -17.34 -0.09 1.06 15 15 N -0.79 -20.63 13.66 55.55 0.76 -19.87 15 16 Si 1.07 23.80 24.90 -169.99 -4.23 19.57 15 17 H -0.27 -5.66 6.43 56.52 0.36 -5.29 15 18 H -0.26 -5.82 7.03 56.52 0.40 -5.42 15 19 H -0.29 -6.07 7.11 56.52 0.40 -5.67 15 20 C -0.06 -1.59 7.31 -38.51 -0.28 -1.87 15 21 F -0.15 -3.98 16.59 2.25 0.04 -3.95 15 22 H 0.05 0.75 7.65 -51.93 -0.40 0.35 15 23 H 0.05 0.74 7.65 -51.93 -0.40 0.34 15 24 H 0.09 1.10 8.14 -51.93 -0.42 0.67 15 25 H 0.13 2.40 3.26 -52.49 -0.17 2.23 15 26 H 0.17 1.33 8.14 -51.93 -0.42 0.91 15 27 H 0.13 2.99 4.37 -52.49 -0.23 2.76 15 28 H 0.29 7.33 8.73 -40.82 -0.36 6.98 15 LS Contribution 253.92 15.07 3.83 3.83 Total: -1.00 -29.60 253.92 -2.35 -31.95 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: -1.65 Total: -0.08 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: -0.75 Total: -12.24 kcal Atomic # 7 Polarization: -20.63 SS G_CDS: 0.76 Total: -19.87 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: -0.41 Total: -13.15 kcal Atomic # 9 Polarization: -10.12 SS G_CDS: 0.11 Total: -10.01 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -4.23 Total: 19.57 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.60 -2.35 -31.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660000.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.109 kcal (2) G-P(sol) polarization free energy of solvation -29.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds