Wall clock time and date at job start Mon Mar 30 2020 06:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35965 * 117.00064 * 2 1 4 4 C 1.38852 * 119.91457 * 359.97438 * 3 2 1 5 5 C 1.39140 * 120.43307 * 180.02562 * 4 3 2 6 6 O 1.35930 * 119.87567 * 180.02562 * 5 4 3 7 7 C 1.42905 * 116.99832 * 0.02562 * 6 5 4 8 8 F 1.39905 * 109.46618 * 299.99737 * 7 6 5 9 9 F 1.39893 * 109.47006 * 59.99477 * 7 6 5 10 10 C 1.38038 * 120.25528 * 359.70266 * 5 4 3 11 11 C 1.40707 * 119.82083 * 0.56948 * 10 5 4 12 12 C 1.41307 * 120.20860 * 179.72434 * 11 10 5 13 13 H 1.07999 * 120.00150 * 208.56406 * 12 11 10 14 14 C 1.39920 * 120.00153 * 28.56277 * 12 11 10 15 15 N 1.30852 * 119.99815 * 197.88042 * 14 12 11 16 16 Si 1.86796 * 119.99707 * 17.88367 * 14 12 11 17 17 H 1.48499 * 109.47213 * 269.99685 * 16 14 12 18 18 H 1.48504 * 109.47542 * 29.99948 * 16 14 12 19 19 H 1.48506 * 109.47240 * 149.99860 * 16 14 12 20 20 C 1.38440 * 119.91485 * 180.02562 * 3 2 1 21 21 F 1.35106 * 120.12953 * 359.97438 * 20 3 2 22 22 H 1.09005 * 109.46449 * 299.99822 * 1 2 3 23 23 H 1.08996 * 109.46914 * 60.00086 * 1 2 3 24 24 H 1.08997 * 109.47382 * 180.02562 * 1 2 3 25 25 H 1.08001 * 119.78844 * 0.02562 * 4 3 2 26 26 H 1.08999 * 109.47076 * 180.02562 * 7 6 5 27 27 H 1.07996 * 120.09202 * 180.28050 * 10 5 4 28 28 H 0.96991 * 120.00393 * 355.45020 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 1.2883 2.3748 -0.0005 5 6 1.9088 3.6202 -0.0011 6 8 1.1557 4.7519 -0.0011 7 6 -0.2637 4.5865 0.0001 8 9 -0.6514 3.8770 -1.1417 9 9 -0.6497 3.8780 1.1429 10 6 3.2862 3.7111 0.0051 11 6 4.0647 2.5391 -0.0002 12 6 5.4754 2.6226 0.0002 13 1 6.0630 1.8365 -0.4505 14 6 6.1109 3.7237 0.5845 15 7 7.3585 3.9895 0.2932 16 14 5.1782 4.8141 1.7805 17 1 4.5106 5.9103 1.0336 18 1 4.1558 4.0063 2.4929 19 1 6.1267 5.3926 2.7660 20 6 3.4289 1.2818 -0.0005 21 9 4.1656 0.1493 -0.0005 22 1 -0.3632 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 0.2101 2.3127 -0.0005 26 1 -0.7435 5.5653 -0.0005 27 1 3.7650 4.6791 0.0092 28 1 7.8628 3.3870 -0.2755 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575660000.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:48 Heat of formation + Delta-G solvation = -236.473875 kcal Electronic energy + Delta-G solvation = -20220.190405 eV Core-core repulsion = 16399.758387 eV Total energy + Delta-G solvation = -3820.432018 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.23020 -49.29340 -48.22859 -41.04969 -39.69685 -37.83728 -35.44796 -31.95180 -30.79854 -28.51529 -26.87736 -26.60349 -23.61803 -22.63288 -20.78521 -19.65571 -19.24620 -18.81625 -18.32169 -17.87012 -17.21208 -16.97592 -16.38949 -15.85719 -15.83681 -15.43822 -15.32793 -15.09693 -14.80111 -14.75966 -14.55557 -14.46814 -13.85709 -13.36463 -13.02773 -12.84535 -12.75605 -12.50600 -12.26841 -11.85753 -11.62031 -11.50228 -10.91387 -9.81467 -9.44547 -8.94344 -6.84956 0.39196 0.49656 1.35657 1.51047 1.73661 1.76634 2.10754 2.29897 2.36156 2.61644 3.09116 3.60683 3.69692 3.77391 4.03976 4.14351 4.24614 4.32853 4.40140 4.62363 4.77304 5.08386 5.16185 5.25137 5.31214 5.48701 5.86015 6.08015 6.13607 6.50448 6.55562 7.79920 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.019225 B = 0.009637 C = 0.006977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.092431 B = 2904.759965 C = 4012.248594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.334 6.334 3 C 0.163 3.837 4 C -0.358 4.358 5 C 0.176 3.824 6 O -0.328 6.328 7 C 0.403 3.597 8 F -0.210 7.210 9 F -0.210 7.210 10 C -0.282 4.282 11 C 0.108 3.892 12 C -0.522 4.522 13 H 0.055 0.945 14 C 0.020 3.980 15 N -0.814 5.814 16 Si 1.099 2.901 17 H -0.245 1.245 18 H -0.265 1.265 19 H -0.270 1.270 20 C -0.104 4.104 21 F -0.164 7.164 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.127 0.873 25 H 0.154 0.846 26 H 0.242 0.758 27 H 0.132 0.868 28 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.309 3.395 1.055 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.248 6.248 3 C 0.116 3.884 4 C -0.378 4.378 5 C 0.132 3.868 6 O -0.245 6.245 7 C 0.314 3.686 8 F -0.192 7.192 9 F -0.191 7.191 10 C -0.301 4.301 11 C 0.104 3.896 12 C -0.550 4.550 13 H 0.073 0.927 14 C -0.197 4.197 15 N -0.435 5.435 16 Si 0.918 3.082 17 H -0.170 1.170 18 H -0.190 1.190 19 H -0.196 1.196 20 C -0.124 4.124 21 F -0.144 7.144 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.146 0.854 25 H 0.171 0.829 26 H 0.258 0.742 27 H 0.149 0.851 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.901 4.645 1.899 16.674 hybrid contribution 0.330 -2.310 -1.349 2.696 sum -15.571 2.335 0.550 15.755 Atomic orbital electron populations 1.23341 0.76309 1.05582 1.02032 1.86064 1.23793 1.26261 1.88681 1.18499 0.89641 0.85277 0.94954 1.20912 1.00217 0.90054 1.26601 1.18259 0.90129 0.84319 0.94115 1.86580 1.18679 1.31023 1.88243 1.24387 0.79304 0.93975 0.70940 1.93057 1.90701 1.82681 1.52760 1.93055 1.90729 1.82711 1.52644 1.20226 0.90406 0.98089 1.21405 1.17349 0.93762 0.89214 0.89279 1.20561 0.91680 1.07888 1.34866 0.92665 1.28451 0.96609 0.97146 0.97515 1.70590 1.10588 1.34011 1.28290 0.83305 0.74489 0.75693 0.74666 1.17008 1.19003 1.19649 1.17364 0.86166 0.82621 1.26298 1.91241 1.77653 1.49550 1.95908 0.92057 0.92112 0.85443 0.82862 0.74226 0.85111 0.90477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.69 15 2 O -0.33 -13.57 10.35 -93.15 -0.96 -14.54 15 3 C 0.16 7.49 6.68 22.47 0.15 7.64 15 4 C -0.36 -14.56 7.26 22.63 0.16 -14.39 15 5 C 0.18 7.36 6.47 22.44 0.15 7.51 15 6 O -0.33 -10.80 10.42 -92.76 -0.97 -11.77 15 7 C 0.40 8.99 5.98 113.37 0.68 9.66 15 8 F -0.21 -5.35 15.57 44.97 0.70 -4.65 15 9 F -0.21 -5.33 15.57 44.97 0.70 -4.63 15 10 C -0.28 -13.47 7.20 22.83 0.16 -13.31 15 11 C 0.11 5.79 5.14 -21.27 -0.11 5.68 15 12 C -0.52 -29.66 9.13 23.43 0.21 -29.45 15 13 H 0.06 3.37 7.95 -2.91 -0.02 3.35 15 14 C 0.02 1.06 5.41 85.25 0.46 1.52 15 15 N -0.81 -43.73 13.66 21.82 0.30 -43.43 15 16 Si 1.10 47.49 24.90 68.60 1.71 49.20 15 17 H -0.25 -9.55 6.43 99.48 0.64 -8.91 15 18 H -0.27 -11.59 7.03 99.48 0.70 -10.89 15 19 H -0.27 -10.92 7.11 99.48 0.71 -10.22 15 20 C -0.10 -5.51 7.31 22.97 0.17 -5.34 15 21 F -0.16 -9.09 16.59 44.97 0.75 -8.34 15 22 H 0.06 1.56 7.65 -2.38 -0.02 1.54 15 23 H 0.06 1.54 7.65 -2.39 -0.02 1.53 15 24 H 0.13 2.55 8.14 -2.39 -0.02 2.53 15 25 H 0.15 5.27 3.26 -2.91 -0.01 5.26 15 26 H 0.24 2.06 8.14 -2.39 -0.02 2.04 15 27 H 0.13 6.04 4.37 -2.91 -0.01 6.03 15 28 H 0.28 15.15 8.73 -92.71 -0.81 14.34 15 Total: -1.00 -66.83 253.92 6.48 -60.34 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.12 Total: 6.60 kcal Atomic # 6 Polarization: -31.93 SS G_CDS: 3.15 Total: -28.78 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.30 Total: -43.43 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -1.93 Total: -26.31 kcal Atomic # 9 Polarization: -19.77 SS G_CDS: 2.15 Total: -17.62 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.71 Total: 49.20 kcal Total: -66.83 6.48 -60.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660000.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.131 kcal (2) G-P(sol) polarization free energy of solvation -66.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds