Wall clock time and date at job start Mon Mar 30 2020 06:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35733 * 116.99851 * 2 1 4 4 C 1.39041 * 119.82243 * 0.23691 * 3 2 1 5 5 C 1.37744 * 120.20496 * 180.27727 * 4 3 2 6 6 F 1.35098 * 120.07799 * 179.76863 * 5 4 3 7 7 C 1.41135 * 119.84166 * 359.74002 * 5 4 3 8 8 C 1.41107 * 120.17857 * 179.97438 * 7 5 4 9 9 H 1.08000 * 119.99705 * 24.79124 * 8 7 5 10 10 C 1.39854 * 120.00274 * 204.78943 * 8 7 5 11 11 N 1.30917 * 119.99534 * 17.98671 * 10 8 7 12 12 Si 1.86802 * 120.00192 * 197.98261 * 10 8 7 13 13 H 1.48495 * 109.46905 * 60.00352 * 12 10 8 14 14 H 1.48498 * 109.46715 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47063 * 300.00013 * 12 10 8 16 16 C 1.40791 * 119.64601 * 0.02562 * 7 5 4 17 17 C 1.37716 * 119.79259 * 0.02562 * 16 7 5 18 18 O 1.35988 * 119.92225 * 179.97438 * 17 16 7 19 19 C 1.42903 * 117.00173 * 0.02562 * 18 17 16 20 20 F 1.39898 * 109.47045 * 59.99860 * 19 18 17 21 21 F 1.39895 * 109.47003 * 299.99675 * 19 18 17 22 22 H 1.09001 * 109.46798 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47310 * 299.99883 * 1 2 3 24 24 H 1.09002 * 109.46729 * 60.00079 * 1 2 3 25 25 H 1.07993 * 119.89664 * 0.02562 * 4 3 2 26 26 H 0.97006 * 119.99709 * 180.02562 * 11 10 8 27 27 H 1.08003 * 120.10388 * 180.02562 * 16 7 5 28 28 H 1.09005 * 109.47221 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2843 2.3731 0.0050 5 6 1.9014 3.6046 -0.0007 6 9 1.1595 4.7337 -0.0006 7 6 3.3105 3.6840 -0.0061 8 6 3.9500 4.9418 -0.0126 9 1 3.4393 5.8093 0.3787 10 6 5.2452 5.0652 -0.5255 11 7 5.7316 4.1333 -1.3059 12 14 6.2811 6.5596 -0.0973 13 1 6.4702 6.6255 1.3741 14 1 7.6043 6.4517 -0.7626 15 1 5.5919 7.7896 -0.5635 16 6 4.0746 2.5016 -0.0062 17 6 3.4423 1.2782 -0.0015 18 8 4.1778 0.1344 -0.0020 19 6 5.5997 0.2773 -0.0070 20 9 6.0015 0.9821 1.1327 21 9 5.9938 0.9782 -1.1518 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 0.2061 2.3113 0.0093 26 1 6.6302 4.2187 -1.6614 27 1 5.1534 2.5537 -0.0099 28 1 6.0640 -0.7089 -0.0065 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575660066.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:01 Heat of formation + Delta-G solvation = -228.791643 kcal Electronic energy + Delta-G solvation = -20301.681859 eV Core-core repulsion = 16481.582968 eV Total energy + Delta-G solvation = -3820.098891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.05008 -49.29387 -48.06680 -40.90415 -39.03521 -37.66646 -35.21941 -31.35443 -30.70970 -28.44742 -27.07602 -26.27716 -23.24367 -22.76755 -20.17803 -19.28120 -18.99419 -18.63726 -18.35147 -17.36914 -16.95898 -16.69209 -16.58508 -15.89392 -15.61630 -15.22335 -15.13085 -14.70477 -14.58901 -14.50024 -14.36887 -14.02811 -13.63287 -13.46807 -13.01889 -12.65962 -12.54126 -12.37612 -12.25607 -12.00489 -11.71490 -11.52484 -10.90801 -9.46340 -8.92567 -8.64332 -6.39804 0.58353 0.72079 1.36452 1.46378 1.50193 1.90180 2.17237 2.50866 2.65785 2.78544 3.33725 3.70612 3.87187 3.90585 4.08412 4.42546 4.48914 4.51756 4.68426 4.76779 4.85219 5.13414 5.15679 5.49181 5.74439 5.84603 6.01430 6.34662 6.57807 6.71691 6.88361 8.22039 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.010089 C = 0.006847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.817126 B = 2774.635588 C = 4088.502893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.329 6.329 3 C 0.009 3.991 4 C -0.167 4.167 5 C -0.043 4.043 6 F -0.161 7.161 7 C 0.058 3.942 8 C -0.486 4.486 9 H 0.077 0.923 10 C 0.037 3.963 11 N -0.801 5.801 12 Si 0.984 3.016 13 H -0.260 1.260 14 H -0.261 1.261 15 H -0.260 1.260 16 C -0.206 4.206 17 C 0.081 3.919 18 O -0.327 6.327 19 C 0.400 3.600 20 F -0.218 7.218 21 F -0.207 7.207 22 H 0.123 0.877 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.150 0.850 26 H 0.293 0.707 27 H 0.149 0.851 28 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.199 -7.122 1.664 7.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.244 6.244 3 C -0.036 4.036 4 C -0.186 4.186 5 C -0.064 4.064 6 F -0.140 7.140 7 C 0.055 3.945 8 C -0.514 4.514 9 H 0.095 0.905 10 C -0.180 4.180 11 N -0.426 5.426 12 Si 0.804 3.196 13 H -0.184 1.184 14 H -0.185 1.185 15 H -0.184 1.184 16 C -0.226 4.226 17 C 0.038 3.962 18 O -0.245 6.245 19 C 0.310 3.690 20 F -0.200 7.200 21 F -0.189 7.189 22 H 0.141 0.859 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.168 0.832 26 H 0.104 0.896 27 H 0.166 0.834 28 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 0.007 -7.495 1.501 7.644 hybrid contribution 0.171 1.372 0.002 1.383 sum 0.178 -6.123 1.502 6.307 Atomic orbital electron populations 1.23196 0.77681 1.04982 1.01309 1.85932 1.22279 1.25377 1.90860 1.17480 0.88033 0.84735 1.13346 1.20600 1.00055 0.89814 1.08142 1.17724 0.89141 0.81468 1.18058 1.91254 1.76551 1.50879 1.95343 1.17708 0.89648 0.94920 0.92227 1.19571 1.00313 0.94777 1.36763 0.90458 1.26769 0.98312 1.01211 0.91743 1.69868 1.17436 1.34438 1.20837 0.85220 0.77211 0.77381 0.79816 1.18384 1.18525 1.18384 1.21503 1.01312 0.89350 1.10451 1.18208 0.88463 0.85080 1.04485 1.86504 1.18085 1.30745 1.89203 1.24263 0.79815 0.93681 0.71212 1.93032 1.90490 1.83164 1.53293 1.93113 1.90530 1.83018 1.52220 0.85934 0.92708 0.92966 0.83203 0.89570 0.83361 0.74886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.80 113.37 1.11 1.74 15 2 O -0.33 -12.97 10.26 -76.57 -0.79 -13.76 15 3 C 0.01 0.41 6.73 22.86 0.15 0.56 15 4 C -0.17 -7.56 8.98 22.35 0.20 -7.36 15 5 C -0.04 -2.27 7.30 22.86 0.17 -2.10 15 6 F -0.16 -8.22 16.70 44.97 0.75 -7.47 15 7 C 0.06 3.26 5.58 -21.24 -0.12 3.14 15 8 C -0.49 -26.90 8.76 23.37 0.20 -26.69 15 9 H 0.08 4.22 7.73 -2.91 -0.02 4.20 15 10 C 0.04 1.88 5.13 85.22 0.44 2.32 15 11 N -0.80 -41.43 10.98 21.81 0.24 -41.19 15 12 Si 0.98 38.33 29.60 68.60 2.03 40.36 15 13 H -0.26 -9.95 7.11 99.48 0.71 -9.24 15 14 H -0.26 -9.44 7.11 99.48 0.71 -8.73 15 15 H -0.26 -9.87 7.11 99.48 0.71 -9.16 15 16 C -0.21 -10.95 6.88 22.77 0.16 -10.80 15 17 C 0.08 3.95 6.50 22.54 0.15 4.10 15 18 O -0.33 -13.65 10.21 -79.42 -0.81 -14.47 15 19 C 0.40 13.61 5.98 113.37 0.68 14.29 15 20 F -0.22 -8.39 15.58 44.97 0.70 -7.69 15 21 F -0.21 -8.37 15.58 44.97 0.70 -7.67 15 22 H 0.12 2.46 8.14 -2.39 -0.02 2.44 15 23 H 0.05 1.40 7.64 -2.39 -0.02 1.38 15 24 H 0.05 1.36 7.66 -2.39 -0.02 1.35 15 25 H 0.15 5.64 6.26 -2.91 -0.02 5.62 15 26 H 0.29 13.73 8.30 -92.70 -0.77 12.96 15 27 H 0.15 7.93 3.18 -2.91 -0.01 7.92 15 28 H 0.24 4.46 8.14 -2.38 -0.02 4.44 15 Total: -1.00 -66.71 258.89 7.19 -59.52 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 1.23 Total: 13.17 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 3.14 Total: -20.81 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.24 Total: -41.19 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -1.60 Total: -28.22 kcal Atomic # 9 Polarization: -24.99 SS G_CDS: 2.15 Total: -22.84 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -66.71 7.19 -59.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660066.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.274 kcal (2) G-P(sol) polarization free energy of solvation -66.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds