Wall clock time and date at job start Mon Mar 30 2020 06:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35755 * 116.99757 * 2 1 4 4 C 1.41272 * 120.26838 * 89.99874 * 3 2 1 5 5 C 1.41114 * 120.23670 * 359.97438 * 4 3 2 6 6 H 1.08002 * 120.00358 * 25.68689 * 5 4 3 7 7 C 1.39895 * 119.99669 * 205.41138 * 5 4 3 8 8 N 1.30896 * 120.00128 * 16.67296 * 7 5 4 9 9 Si 1.86805 * 119.99683 * 196.67020 * 7 5 4 10 10 H 1.48492 * 109.47207 * 59.99872 * 9 7 5 11 11 H 1.48499 * 109.46916 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47145 * 299.99941 * 9 7 5 13 13 C 1.40797 * 119.52205 * 179.71886 * 4 3 2 14 14 C 1.36451 * 120.03642 * 0.23244 * 13 4 3 15 15 C 1.39028 * 120.53899 * 359.97438 * 14 13 4 16 16 F 1.35097 * 119.75809 * 180.02562 * 15 14 13 17 17 C 1.38674 * 120.26375 * 270.17892 * 3 2 1 18 18 O 1.36069 * 120.02470 * 0.02562 * 17 3 2 19 19 C 1.42900 * 116.99555 * 270.27663 * 18 17 3 20 20 F 1.39904 * 109.47198 * 299.99302 * 19 18 17 21 21 F 1.39893 * 109.47477 * 60.00174 * 19 18 17 22 22 H 1.08998 * 109.46912 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47013 * 300.00334 * 1 2 3 24 24 H 1.08999 * 109.47009 * 60.00285 * 1 2 3 25 25 H 0.96998 * 120.00024 * 180.02562 * 8 7 5 26 26 H 1.07994 * 119.98085 * 180.25499 * 13 4 3 27 27 H 1.07998 * 119.73255 * 180.02562 * 14 13 4 28 28 H 1.09005 * 109.47005 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 2.3685 1.8441 1.2201 5 6 2.0526 1.2253 2.4484 6 1 1.9597 0.1507 2.5036 7 6 1.8655 2.0034 3.5958 8 7 1.6580 3.2912 3.4867 9 14 1.9118 1.2045 5.2838 10 1 3.2369 0.5681 5.4940 11 1 1.6872 2.2376 6.3266 12 1 0.8475 0.1728 5.3725 13 6 3.0130 3.0958 1.2018 14 6 3.3169 3.6902 0.0117 15 6 2.9959 3.0696 -1.1902 16 9 3.3046 3.6720 -2.3593 17 6 2.3592 1.8340 -1.1977 18 8 2.0493 1.2350 -2.3795 19 6 3.0335 0.3663 -2.9441 20 9 4.2085 1.0866 -3.1846 21 9 3.3007 -0.6778 -2.0522 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.5286 3.8308 4.2823 26 1 3.2672 3.5856 2.1301 27 1 3.8117 4.6501 0.0034 28 1 2.6606 -0.0437 -3.8828 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575660232.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:23 Heat of formation + Delta-G solvation = -231.822972 kcal Electronic energy + Delta-G solvation = -20419.798240 eV Core-core repulsion = 16599.567900 eV Total energy + Delta-G solvation = -3820.230339 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.96941 -49.42537 -48.08930 -40.74453 -38.58064 -37.66719 -35.41788 -31.39119 -30.65543 -28.00094 -26.77426 -26.55571 -23.15400 -22.91881 -20.23676 -19.12069 -18.78619 -18.74994 -18.50789 -17.67385 -16.92042 -16.53583 -16.45610 -15.95915 -15.76676 -15.31906 -14.99132 -14.92961 -14.48130 -14.24556 -14.14963 -13.99673 -13.55442 -13.24558 -12.90055 -12.77939 -12.63916 -12.49709 -12.11730 -12.01577 -11.56658 -11.12251 -10.55682 -9.48321 -9.39461 -8.80086 -6.46875 0.30499 0.54021 1.40126 1.47027 1.52836 2.14324 2.17056 2.53586 2.74495 3.01457 3.46512 3.76284 3.80193 3.88417 4.26620 4.53315 4.63194 4.71154 4.73812 4.84777 4.89115 5.10971 5.31847 5.59897 5.69558 5.78889 6.18989 6.30049 6.56637 6.70321 7.05556 8.15775 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.026028 B = 0.007788 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.519794 B = 3594.511183 C = 4195.630762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.327 6.327 3 C -0.026 4.026 4 C 0.070 3.930 5 C -0.456 4.456 6 H 0.083 0.917 7 C 0.040 3.960 8 N -0.806 5.806 9 Si 0.987 3.013 10 H -0.260 1.260 11 H -0.263 1.263 12 H -0.259 1.259 13 C -0.141 4.141 14 C -0.122 4.122 15 C -0.050 4.050 16 F -0.156 7.156 17 C 0.049 3.951 18 O -0.339 6.339 19 C 0.397 3.603 20 F -0.219 7.219 21 F -0.211 7.211 22 H 0.110 0.890 23 H 0.031 0.969 24 H 0.036 0.964 25 H 0.298 0.702 26 H 0.131 0.869 27 H 0.136 0.864 28 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.627 -3.688 -4.025 5.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.244 6.244 3 C -0.071 4.071 4 C 0.067 3.933 5 C -0.483 4.483 6 H 0.101 0.899 7 C -0.179 4.179 8 N -0.430 5.430 9 Si 0.807 3.193 10 H -0.184 1.184 11 H -0.187 1.187 12 H -0.183 1.183 13 C -0.160 4.160 14 C -0.141 4.141 15 C -0.070 4.070 16 F -0.135 7.135 17 C 0.006 3.994 18 O -0.259 6.259 19 C 0.309 3.691 20 F -0.201 7.201 21 F -0.193 7.193 22 H 0.128 0.872 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.109 0.891 26 H 0.149 0.851 27 H 0.154 0.846 28 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -0.727 -3.607 -4.019 5.449 hybrid contribution 0.124 0.225 0.487 0.551 sum -0.603 -3.382 -3.532 4.927 Atomic orbital electron populations 1.22962 0.80101 1.03144 0.99488 1.85906 1.19858 1.24534 1.94099 1.18666 1.07080 0.90923 0.90470 1.18169 0.90615 0.92062 0.92479 1.19687 1.40615 0.95601 0.92404 0.89865 1.26831 0.90841 0.95019 1.05166 1.69815 1.31054 1.07729 1.34356 0.85152 0.80220 0.78993 0.74915 1.18422 1.18689 1.18326 1.20979 1.00731 0.97365 0.96920 1.20655 1.02095 1.00695 0.90649 1.17480 1.12619 0.95237 0.81680 1.91310 1.92363 1.83185 1.46634 1.18709 1.04330 0.92064 0.84339 1.86496 1.42338 1.61128 1.35933 1.24372 0.76187 0.76570 0.91995 1.93038 1.52870 1.79612 1.94588 1.93071 1.94180 1.59038 1.73033 0.87195 0.95055 0.94570 0.89086 0.85094 0.84620 0.75638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 11.13 113.37 1.26 2.69 15 2 O -0.33 -15.30 8.93 -76.81 -0.69 -15.99 15 3 C -0.03 -1.29 5.51 23.12 0.13 -1.17 15 4 C 0.07 3.67 5.57 -21.20 -0.12 3.55 15 5 C -0.46 -23.06 8.71 23.38 0.20 -22.85 15 6 H 0.08 4.20 7.66 -2.91 -0.02 4.18 15 7 C 0.04 1.81 5.15 85.23 0.44 2.25 15 8 N -0.81 -37.94 10.96 21.82 0.24 -37.70 15 9 Si 0.99 34.95 29.59 68.60 2.03 36.98 15 10 H -0.26 -9.15 7.11 99.48 0.71 -8.45 15 11 H -0.26 -8.67 7.11 99.48 0.71 -7.96 15 12 H -0.26 -8.98 7.11 99.48 0.71 -8.28 15 13 C -0.14 -7.00 8.63 22.48 0.19 -6.80 15 14 C -0.12 -5.66 9.94 22.04 0.22 -5.44 15 15 C -0.05 -2.38 7.04 22.64 0.16 -2.22 15 16 F -0.16 -7.13 16.74 44.97 0.75 -6.38 15 17 C 0.05 2.37 5.34 22.55 0.12 2.49 15 18 O -0.34 -14.16 9.99 -80.33 -0.80 -14.96 15 19 C 0.40 13.30 6.35 113.37 0.72 14.02 15 20 F -0.22 -8.16 16.63 44.97 0.75 -7.42 15 21 F -0.21 -8.10 16.42 44.97 0.74 -7.36 15 22 H 0.11 3.33 8.14 -2.39 -0.02 3.31 15 23 H 0.03 1.26 8.14 -2.38 -0.02 1.24 15 24 H 0.04 1.33 8.14 -2.39 -0.02 1.31 15 25 H 0.30 12.52 8.30 -92.71 -0.77 11.75 15 26 H 0.13 6.49 6.19 -2.91 -0.02 6.47 15 27 H 0.14 5.45 8.06 -2.91 -0.02 5.43 15 28 H 0.23 4.43 8.14 -2.38 -0.02 4.41 15 Total: -1.00 -60.44 266.73 7.56 -52.89 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 1.21 Total: 13.42 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 3.33 Total: -13.47 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.24 Total: -37.70 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -1.49 Total: -30.95 kcal Atomic # 9 Polarization: -23.40 SS G_CDS: 2.24 Total: -21.16 kcal Atomic # 14 Polarization: 34.95 SS G_CDS: 2.03 Total: 36.98 kcal Total: -60.44 7.56 -52.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660232.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.935 kcal (2) G-P(sol) polarization free energy of solvation -60.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds