Wall clock time and date at job start Mon Mar 30 2020 06:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35721 * 116.99681 * 2 1 4 4 C 1.38286 * 120.14336 * 0.02562 * 3 2 1 5 5 C 1.38379 * 120.28532 * 179.97438 * 4 3 2 6 6 C 1.39109 * 120.57115 * 0.02562 * 5 4 3 7 7 O 1.36032 * 119.86186 * 179.97438 * 6 5 4 8 8 C 1.42899 * 116.99965 * 359.97438 * 7 6 5 9 9 F 1.39905 * 109.47009 * 60.00538 * 8 7 6 10 10 F 1.39896 * 109.47207 * 300.00318 * 8 7 6 11 11 C 1.38180 * 120.27543 * 0.25281 * 6 5 4 12 12 F 1.35103 * 120.14558 * 179.74605 * 11 6 5 13 13 C 1.40894 * 119.70809 * 359.49986 * 11 6 5 14 14 C 1.41090 * 120.28218 * 180.25018 * 13 11 6 15 15 H 1.08004 * 120.00499 * 216.50778 * 14 13 11 16 16 C 1.39907 * 119.99951 * 36.50667 * 14 13 11 17 17 N 1.30900 * 119.99807 * 19.90740 * 16 14 13 18 18 Si 1.86800 * 120.00380 * 199.90344 * 16 14 13 19 19 H 1.48504 * 109.46727 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46980 * 119.99887 * 18 16 14 21 21 H 1.48500 * 109.47219 * 240.00457 * 18 16 14 22 22 H 1.09006 * 109.47123 * 60.00215 * 1 2 3 23 23 H 1.08999 * 109.46779 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47194 * 299.99620 * 1 2 3 25 25 H 1.07994 * 119.85765 * 359.95772 * 4 3 2 26 26 H 1.08002 * 119.71476 * 179.97438 * 5 4 3 27 27 H 1.09004 * 109.46997 * 180.02562 * 8 7 6 28 28 H 0.97003 * 120.00117 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2947 2.3709 0.0005 5 6 1.9198 3.6055 0.0011 6 6 3.3080 3.6956 0.0005 7 8 3.9074 4.9168 0.0006 8 6 3.0503 6.0602 0.0006 9 9 2.2430 6.0378 1.1429 10 9 2.2429 6.0378 -1.1417 11 6 4.0805 2.5500 -0.0058 12 9 5.4285 2.6406 -0.0115 13 6 3.4563 1.2869 -0.0010 14 6 4.2334 0.1092 -0.0021 15 1 3.9011 -0.7566 -0.5557 16 6 5.4344 0.0630 0.7140 17 7 5.6562 0.9225 1.6761 18 14 6.7214 -1.2251 0.2972 19 1 6.2318 -2.0701 -0.8215 20 1 7.9824 -0.5525 -0.1063 21 1 6.9734 -2.0764 1.4876 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 0.2163 2.3144 0.0003 26 1 1.3248 4.5068 0.0011 27 1 3.6548 6.9673 0.0001 28 1 6.4891 0.8907 2.1723 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575660271.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:16 Heat of formation + Delta-G solvation = -201.302474 kcal Electronic energy + Delta-G solvation = -20197.085541 eV Core-core repulsion = 16378.178669 eV Total energy + Delta-G solvation = -3818.906871 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.87103 -46.95664 -46.87236 -38.93487 -37.89076 -35.28193 -33.47928 -30.01164 -28.46678 -26.68104 -25.23007 -25.19559 -21.44547 -20.92755 -18.41633 -17.87726 -17.43303 -17.21477 -16.48743 -15.83154 -14.95389 -14.71476 -14.70360 -14.45686 -14.12973 -13.66636 -13.65348 -13.25348 -13.01808 -12.78057 -12.68657 -12.33905 -11.71123 -11.50670 -11.35468 -11.25828 -11.08112 -10.98158 -10.47877 -10.40357 -9.71057 -9.58429 -9.06050 -7.39429 -6.91119 -6.76288 -4.40921 2.52171 2.59164 3.09859 3.14026 3.18502 3.26569 3.92069 3.97439 4.32591 4.49069 4.75120 5.06486 5.27074 5.65178 5.73309 5.76032 5.83900 5.97987 6.28553 6.41368 6.77810 7.09219 7.15361 7.29345 7.31958 7.59072 8.06917 8.26690 8.43783 8.68875 8.86144 10.16932 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.008595 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.326786 B = 3257.044302 C = 4357.943546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C 0.033 3.967 4 C -0.162 4.162 5 C -0.249 4.249 6 C 0.061 3.939 7 O -0.322 6.322 8 C 0.412 3.588 9 F -0.204 7.204 10 F -0.206 7.206 11 C 0.042 3.958 12 F -0.129 7.129 13 C 0.092 3.908 14 C -0.442 4.442 15 H 0.092 0.908 16 C 0.074 3.926 17 N -0.772 5.772 18 Si 0.913 3.087 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.275 1.275 22 H 0.042 0.958 23 H 0.085 0.915 24 H 0.042 0.958 25 H 0.108 0.892 26 H 0.114 0.886 27 H 0.168 0.832 28 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.415 5.013 -1.941 6.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.219 6.219 3 C -0.012 4.012 4 C -0.181 4.181 5 C -0.269 4.269 6 C 0.018 3.982 7 O -0.240 6.240 8 C 0.321 3.679 9 F -0.186 7.186 10 F -0.188 7.188 11 C 0.020 3.980 12 F -0.108 7.108 13 C 0.088 3.912 14 C -0.470 4.470 15 H 0.110 0.890 16 C -0.146 4.146 17 N -0.395 5.395 18 Si 0.737 3.263 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.200 1.200 22 H 0.060 0.940 23 H 0.103 0.897 24 H 0.061 0.939 25 H 0.126 0.874 26 H 0.132 0.868 27 H 0.185 0.815 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.946 4.917 -1.746 6.541 hybrid contribution 0.150 -0.121 0.058 0.201 sum -3.796 4.795 -1.688 6.345 Atomic orbital electron populations 1.22795 0.81249 1.02101 1.00147 1.85993 1.18515 1.27446 1.89991 1.18852 0.91515 0.83023 1.07808 1.20431 0.98020 0.91800 1.07886 1.20252 0.91126 0.97860 1.17700 1.18592 0.91888 0.81765 1.05907 1.86580 1.34811 1.13050 1.89532 1.23135 0.80654 0.92357 0.71759 1.93061 1.76285 1.96968 1.52325 1.93053 1.76336 1.96986 1.52385 1.16526 0.76645 0.89808 1.15023 1.91343 1.28670 1.96568 1.94186 1.16611 0.88385 0.91889 0.94354 1.19267 1.02954 0.98652 1.26175 0.88998 1.25871 0.98644 0.96835 0.93297 1.69806 1.24459 1.31946 1.13301 0.86168 0.80202 0.80381 0.79530 1.18226 1.19580 1.19994 0.93987 0.89693 0.93894 0.87379 0.86810 0.81540 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.81 101.05 0.99 1.53 15 2 O -0.31 -6.91 9.92 -18.87 -0.19 -7.10 15 3 C 0.03 0.81 6.72 -38.39 -0.26 0.55 15 4 C -0.16 -3.63 9.02 -39.51 -0.36 -3.98 15 5 C -0.25 -5.68 8.26 -39.21 -0.32 -6.00 15 6 C 0.06 1.50 6.48 -39.28 -0.25 1.25 15 7 O -0.32 -6.90 10.28 -19.84 -0.20 -7.10 15 8 C 0.41 6.57 5.98 101.05 0.60 7.18 15 9 F -0.20 -3.53 15.57 2.25 0.04 -3.50 15 10 F -0.21 -3.45 15.57 2.25 0.04 -3.42 15 11 C 0.04 1.14 6.68 -38.60 -0.26 0.88 15 12 F -0.13 -3.62 14.08 2.25 0.03 -3.59 15 13 C 0.09 2.50 5.41 -106.63 -0.58 1.93 15 14 C -0.44 -12.05 8.49 -37.88 -0.32 -12.37 15 15 H 0.09 2.43 7.87 -52.48 -0.41 2.02 15 16 C 0.07 1.93 4.51 -17.32 -0.08 1.85 15 17 N -0.77 -20.87 11.11 55.55 0.62 -20.26 15 18 Si 0.91 19.38 29.60 -169.99 -5.03 14.34 15 19 H -0.26 -5.38 7.11 56.52 0.40 -4.98 15 20 H -0.27 -5.70 7.11 56.52 0.40 -5.29 15 21 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 22 H 0.04 0.63 7.66 -51.93 -0.40 0.23 15 23 H 0.08 1.13 8.14 -51.93 -0.42 0.71 15 24 H 0.04 0.66 7.66 -51.93 -0.40 0.26 15 25 H 0.11 2.06 6.28 -52.49 -0.33 1.73 15 26 H 0.11 2.37 5.05 -52.49 -0.27 2.10 15 27 H 0.17 1.68 8.14 -51.93 -0.42 1.26 15 28 H 0.28 7.00 8.30 -40.82 -0.34 6.66 15 LS Contribution 257.90 15.07 3.89 3.89 Total: -1.00 -31.03 257.90 -3.43 -34.46 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -1.78 Total: -0.55 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.83 Total: -7.18 kcal Atomic # 7 Polarization: -20.87 SS G_CDS: 0.62 Total: -20.26 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.39 Total: -14.20 kcal Atomic # 9 Polarization: -10.60 SS G_CDS: 0.10 Total: -10.50 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.03 -3.43 -34.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660271.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.844 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds