Wall clock time and date at job start Mon Mar 30 2020 06:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35721 * 116.99681 * 2 1 4 4 C 1.38286 * 120.14336 * 0.02562 * 3 2 1 5 5 C 1.38379 * 120.28532 * 179.97438 * 4 3 2 6 6 C 1.39109 * 120.57115 * 0.02562 * 5 4 3 7 7 O 1.36032 * 119.86186 * 179.97438 * 6 5 4 8 8 C 1.42899 * 116.99965 * 359.97438 * 7 6 5 9 9 F 1.39905 * 109.47009 * 60.00538 * 8 7 6 10 10 F 1.39896 * 109.47207 * 300.00318 * 8 7 6 11 11 C 1.38180 * 120.27543 * 0.25281 * 6 5 4 12 12 F 1.35103 * 120.14558 * 179.74605 * 11 6 5 13 13 C 1.40894 * 119.70809 * 359.49986 * 11 6 5 14 14 C 1.41090 * 120.28218 * 180.25018 * 13 11 6 15 15 H 1.08004 * 120.00499 * 216.50778 * 14 13 11 16 16 C 1.39907 * 119.99951 * 36.50667 * 14 13 11 17 17 N 1.30900 * 119.99807 * 19.90740 * 16 14 13 18 18 Si 1.86800 * 120.00380 * 199.90344 * 16 14 13 19 19 H 1.48504 * 109.46727 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46980 * 119.99887 * 18 16 14 21 21 H 1.48500 * 109.47219 * 240.00457 * 18 16 14 22 22 H 1.09006 * 109.47123 * 60.00215 * 1 2 3 23 23 H 1.08999 * 109.46779 * 179.97438 * 1 2 3 24 24 H 1.08991 * 109.47194 * 299.99620 * 1 2 3 25 25 H 1.07994 * 119.85765 * 359.95772 * 4 3 2 26 26 H 1.08002 * 119.71476 * 179.97438 * 5 4 3 27 27 H 1.09004 * 109.46997 * 180.02562 * 8 7 6 28 28 H 0.97003 * 120.00117 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2947 2.3709 0.0005 5 6 1.9198 3.6055 0.0011 6 6 3.3080 3.6956 0.0005 7 8 3.9074 4.9168 0.0006 8 6 3.0503 6.0602 0.0006 9 9 2.2430 6.0378 1.1429 10 9 2.2429 6.0378 -1.1417 11 6 4.0805 2.5500 -0.0058 12 9 5.4285 2.6406 -0.0115 13 6 3.4563 1.2869 -0.0010 14 6 4.2334 0.1092 -0.0021 15 1 3.9011 -0.7566 -0.5557 16 6 5.4344 0.0630 0.7140 17 7 5.6562 0.9225 1.6761 18 14 6.7214 -1.2251 0.2972 19 1 6.2318 -2.0701 -0.8215 20 1 7.9824 -0.5525 -0.1063 21 1 6.9734 -2.0764 1.4876 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 0.2163 2.3144 0.0003 26 1 1.3248 4.5068 0.0011 27 1 3.6548 6.9673 0.0001 28 1 6.4891 0.8907 2.1723 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575660271.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:16 Heat of formation + Delta-G solvation = -221.809655 kcal Electronic energy + Delta-G solvation = -20197.974799 eV Core-core repulsion = 16378.178669 eV Total energy + Delta-G solvation = -3819.796129 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.19357 -49.00353 -48.19440 -40.68577 -39.54314 -37.05080 -35.36360 -31.89126 -30.21311 -28.15706 -27.08172 -26.63205 -23.27456 -22.67014 -20.12575 -19.40949 -18.95504 -18.78589 -18.21077 -17.56040 -16.73808 -16.41396 -16.35980 -16.20859 -15.87538 -15.34723 -15.12787 -14.72142 -14.61731 -14.39164 -14.31339 -13.85610 -13.53685 -13.21100 -12.98227 -12.93960 -12.71604 -12.62123 -12.23244 -12.09157 -11.47303 -11.28219 -10.94031 -9.35041 -8.79386 -8.60941 -6.40717 0.64558 0.70682 1.37378 1.44712 1.54361 1.85378 2.21482 2.58735 2.63616 2.75563 3.29351 3.62304 3.81339 3.89603 4.07891 4.39013 4.51692 4.54784 4.62935 4.78284 4.99390 5.19346 5.29847 5.44191 5.46322 5.73889 6.15991 6.40394 6.53800 6.76079 7.03724 8.29499 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.008595 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.326786 B = 3257.044302 C = 4357.943546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.330 6.330 3 C 0.026 3.974 4 C -0.159 4.159 5 C -0.241 4.241 6 C 0.056 3.944 7 O -0.340 6.340 8 C 0.406 3.594 9 F -0.212 7.212 10 F -0.210 7.210 11 C 0.004 3.996 12 F -0.145 7.145 13 C 0.057 3.943 14 C -0.478 4.478 15 H 0.085 0.915 16 C 0.033 3.967 17 N -0.812 5.812 18 Si 0.983 3.017 19 H -0.254 1.254 20 H -0.268 1.268 21 H -0.261 1.261 22 H 0.059 0.941 23 H 0.115 0.885 24 H 0.054 0.946 25 H 0.147 0.853 26 H 0.137 0.863 27 H 0.234 0.766 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.535 5.547 -2.196 8.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.245 6.245 3 C -0.019 4.019 4 C -0.178 4.178 5 C -0.261 4.261 6 C 0.013 3.987 7 O -0.258 6.258 8 C 0.317 3.683 9 F -0.194 7.194 10 F -0.191 7.191 11 C -0.018 4.018 12 F -0.123 7.123 13 C 0.054 3.946 14 C -0.506 4.506 15 H 0.103 0.897 16 C -0.183 4.183 17 N -0.436 5.436 18 Si 0.803 3.197 19 H -0.177 1.177 20 H -0.193 1.193 21 H -0.186 1.186 22 H 0.077 0.923 23 H 0.133 0.867 24 H 0.072 0.928 25 H 0.164 0.836 26 H 0.155 0.845 27 H 0.249 0.751 28 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.102 5.465 -2.002 7.740 hybrid contribution 0.277 -0.161 0.125 0.344 sum -4.825 5.304 -1.877 7.412 Atomic orbital electron populations 1.23199 0.77926 1.04716 1.01412 1.85952 1.21964 1.26764 1.89815 1.18999 0.91119 0.84559 1.07248 1.20837 0.99902 0.90808 1.06260 1.20631 0.90655 0.98997 1.15839 1.18680 0.92331 0.82582 1.05108 1.86556 1.36777 1.13149 1.89361 1.24190 0.80895 0.92180 0.71018 1.93043 1.76620 1.96876 1.52814 1.93040 1.76579 1.96879 1.52648 1.16923 0.76450 0.91201 1.17214 1.91275 1.29786 1.96715 1.94558 1.17052 0.90136 0.92297 0.95134 1.19428 1.04658 0.98859 1.27683 0.89652 1.26739 1.00175 0.98918 0.92514 1.69855 1.25301 1.34041 1.14446 0.85135 0.77113 0.77731 0.79685 1.17722 1.19260 1.18582 0.92289 0.86666 0.92767 0.83559 0.84519 0.75064 0.89969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.81 113.37 1.11 1.78 15 2 O -0.33 -14.77 9.92 -90.43 -0.90 -15.66 15 3 C 0.03 1.28 6.72 23.04 0.15 1.44 15 4 C -0.16 -6.84 9.02 22.31 0.20 -6.64 15 5 C -0.24 -10.60 8.26 22.51 0.19 -10.42 15 6 C 0.06 2.76 6.48 22.47 0.15 2.91 15 7 O -0.34 -14.26 10.28 -93.92 -0.97 -15.22 15 8 C 0.41 11.83 5.98 113.37 0.68 12.51 15 9 F -0.21 -6.76 15.57 44.97 0.70 -6.06 15 10 F -0.21 -6.46 15.57 44.97 0.70 -5.76 15 11 C 0.00 0.20 6.68 22.91 0.15 0.36 15 12 F -0.14 -8.44 14.08 44.97 0.63 -7.80 15 13 C 0.06 3.23 5.41 -21.17 -0.11 3.12 15 14 C -0.48 -26.98 8.49 23.37 0.20 -26.78 15 15 H 0.09 4.71 7.87 -2.91 -0.02 4.69 15 16 C 0.03 1.77 4.51 85.24 0.38 2.16 15 17 N -0.81 -45.36 11.11 21.82 0.24 -45.12 15 18 Si 0.98 40.54 29.60 68.60 2.03 42.57 15 19 H -0.25 -10.11 7.11 99.48 0.71 -9.41 15 20 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 21 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 22 H 0.06 1.57 7.66 -2.38 -0.02 1.56 15 23 H 0.12 2.73 8.14 -2.39 -0.02 2.71 15 24 H 0.05 1.51 7.66 -2.39 -0.02 1.49 15 25 H 0.15 5.04 6.28 -2.91 -0.02 5.03 15 26 H 0.14 5.30 5.05 -2.91 -0.01 5.28 15 27 H 0.23 3.66 8.14 -2.38 -0.02 3.64 15 28 H 0.29 14.71 8.30 -92.71 -0.77 13.94 15 Total: -1.00 -69.95 257.90 6.76 -63.18 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 1.22 Total: 9.45 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 3.10 Total: -19.57 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.24 Total: -45.12 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -1.86 Total: -30.89 kcal Atomic # 9 Polarization: -21.65 SS G_CDS: 2.03 Total: -19.62 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -69.95 6.76 -63.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660271.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.627 kcal (2) G-P(sol) polarization free energy of solvation -69.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -228.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds