Wall clock time and date at job start Mon Mar 30 2020 06:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35766 * 117.00318 * 2 1 4 4 C 1.41180 * 120.20036 * 90.00307 * 3 2 1 5 5 C 1.41171 * 120.24931 * 0.02721 * 4 3 2 6 6 H 1.08003 * 119.99777 * 25.10691 * 5 4 3 7 7 C 1.39914 * 120.00202 * 205.10774 * 5 4 3 8 8 N 1.30878 * 119.99939 * 26.45661 * 7 5 4 9 9 Si 1.86803 * 120.00174 * 206.46160 * 7 5 4 10 10 H 1.48494 * 109.47177 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46719 * 299.99815 * 9 7 5 12 12 H 1.48500 * 109.47293 * 59.99656 * 9 7 5 13 13 C 1.40771 * 119.49946 * 179.75011 * 4 3 2 14 14 C 1.37658 * 119.88074 * 0.25354 * 13 4 3 15 15 F 1.35104 * 119.80370 * 179.97438 * 14 13 4 16 16 C 1.39016 * 120.40256 * 0.02562 * 14 13 4 17 17 C 1.38661 * 120.50946 * 359.97438 * 16 14 13 18 18 O 1.36010 * 119.94274 * 179.97438 * 17 16 14 19 19 C 1.42897 * 117.00145 * 0.02562 * 18 17 16 20 20 F 1.39900 * 109.47063 * 299.99742 * 19 18 17 21 21 F 1.39895 * 109.46959 * 59.99851 * 19 18 17 22 22 H 1.08996 * 109.46964 * 59.99549 * 1 2 3 23 23 H 1.08997 * 109.47074 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46593 * 299.99443 * 1 2 3 25 25 H 0.96999 * 119.99330 * 5.88887 * 8 7 5 26 26 H 1.08005 * 120.05711 * 180.23420 * 13 4 3 27 27 H 1.07998 * 119.74120 * 179.97438 * 16 14 13 28 28 H 1.09003 * 109.47076 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 2.3679 1.8424 1.2202 5 6 2.0524 1.2217 2.4483 6 1 1.9510 0.1477 2.5002 7 6 1.8710 1.9979 3.5981 8 7 1.4800 3.2425 3.4926 9 14 2.1870 1.2580 5.2840 10 1 1.9250 2.2791 6.3298 11 1 1.2870 0.0949 5.4906 12 1 3.6006 0.8117 5.3717 13 6 3.0118 3.0941 1.2030 14 6 3.3164 3.6922 0.0011 15 9 3.9339 4.8937 -0.0136 16 6 2.9915 3.0678 -1.1977 17 6 2.3572 1.8348 -1.2000 18 8 2.0442 1.2345 -2.3796 19 6 2.3987 1.9308 -3.5760 20 9 1.7526 3.1713 -3.6025 21 9 3.7837 2.1255 -3.6092 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 1.2339 3.6016 2.6258 26 1 3.2661 3.5844 2.1311 27 1 3.2351 3.5468 -2.1345 28 1 2.0931 1.3438 -4.4422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575660309.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:25 Heat of formation + Delta-G solvation = -220.841319 kcal Electronic energy + Delta-G solvation = -20179.165112 eV Core-core repulsion = 16359.410973 eV Total energy + Delta-G solvation = -3819.754139 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.98274 -47.94503 -46.98349 -39.25172 -37.27365 -35.90425 -33.74455 -29.50254 -28.69920 -26.25697 -25.85007 -24.81688 -21.59768 -21.24938 -19.00652 -17.96560 -17.54699 -17.40908 -16.52397 -15.77015 -15.62757 -14.87365 -14.52113 -14.36870 -14.24246 -13.90622 -13.64799 -13.38661 -13.20671 -13.08404 -12.97468 -12.65584 -12.20247 -11.84393 -11.53628 -11.35929 -10.72964 -10.63937 -10.51871 -10.24694 -9.91962 -9.28590 -8.85840 -7.87772 -7.61629 -7.24242 -4.78236 2.24758 2.39324 3.04645 3.08451 3.12731 3.27216 3.79489 3.85503 4.12859 4.61887 4.73643 4.94332 5.18802 5.33864 5.94986 6.05164 6.07693 6.17370 6.30076 6.34136 6.66371 6.97940 7.13928 7.32016 7.33731 7.53940 7.77141 7.92731 8.17679 8.49299 8.79275 9.73167 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.025438 B = 0.007517 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.440606 B = 3724.118855 C = 4482.576639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.312 6.312 3 C -0.055 4.055 4 C 0.119 3.881 5 C -0.478 4.478 6 H 0.093 0.907 7 C 0.036 3.964 8 N -0.772 5.772 9 Si 1.069 2.931 10 H -0.271 1.271 11 H -0.272 1.272 12 H -0.270 1.270 13 C -0.265 4.265 14 C 0.157 3.843 15 F -0.157 7.157 16 C -0.352 4.352 17 C 0.151 3.849 18 O -0.317 6.317 19 C 0.409 3.591 20 F -0.204 7.204 21 F -0.202 7.202 22 H 0.028 0.972 23 H 0.074 0.926 24 H 0.041 0.959 25 H 0.302 0.698 26 H 0.124 0.876 27 H 0.120 0.880 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.281 -2.973 -6.577 7.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.228 6.228 3 C -0.101 4.101 4 C 0.115 3.885 5 C -0.504 4.504 6 H 0.111 0.889 7 C -0.189 4.189 8 N -0.393 5.393 9 Si 0.891 3.109 10 H -0.196 1.196 11 H -0.197 1.197 12 H -0.195 1.195 13 C -0.285 4.285 14 C 0.137 3.863 15 F -0.136 7.136 16 C -0.373 4.373 17 C 0.108 3.892 18 O -0.234 6.234 19 C 0.318 3.682 20 F -0.185 7.185 21 F -0.184 7.184 22 H 0.047 0.953 23 H 0.092 0.908 24 H 0.060 0.940 25 H 0.116 0.884 26 H 0.142 0.858 27 H 0.138 0.862 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.247 -2.819 -4.992 5.867 hybrid contribution 0.026 0.507 -1.964 2.029 sum -1.222 -2.311 -6.956 7.431 Atomic orbital electron populations 1.22800 0.82821 1.00865 0.99606 1.86033 1.17717 1.25145 1.93928 1.17723 1.11176 0.92652 0.88553 1.17323 0.89514 0.89877 0.91827 1.20625 1.39595 0.97682 0.92454 0.88902 1.27318 0.91645 0.93863 1.06075 1.70490 1.22546 1.14285 1.31970 0.83567 0.78347 0.76282 0.72676 1.19598 1.19683 1.19521 1.20978 1.11089 1.00713 0.95710 1.17159 0.94578 0.80421 0.94100 1.91371 1.80825 1.43804 1.97601 1.20331 1.20235 0.99150 0.97577 1.18684 0.96513 0.91196 0.82854 1.86633 1.77674 1.46406 1.12727 1.23204 0.74061 0.79790 0.91121 1.93070 1.81406 1.47299 1.96768 1.93071 1.33169 1.95448 1.96725 0.95299 0.90781 0.94010 0.88380 0.85843 0.86200 0.81338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.13 101.05 1.12 1.79 15 2 O -0.31 -7.33 9.48 -33.73 -0.32 -7.65 15 3 C -0.06 -1.38 5.77 -38.24 -0.22 -1.60 15 4 C 0.12 3.07 5.30 -106.71 -0.57 2.51 15 5 C -0.48 -12.01 8.63 -37.84 -0.33 -12.34 15 6 H 0.09 2.31 7.72 -52.48 -0.41 1.91 15 7 C 0.04 0.85 4.91 -17.33 -0.09 0.76 15 8 N -0.77 -19.32 12.32 55.55 0.68 -18.63 15 9 Si 1.07 20.17 30.01 -169.99 -5.10 15.07 15 10 H -0.27 -5.10 7.11 56.52 0.40 -4.69 15 11 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 12 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 13 C -0.26 -6.75 7.94 -38.84 -0.31 -7.06 15 14 C 0.16 3.85 7.28 -39.51 -0.29 3.56 15 15 F -0.16 -3.69 17.26 2.25 0.04 -3.65 15 16 C -0.35 -8.27 8.24 -39.14 -0.32 -8.60 15 17 C 0.15 3.52 6.49 -39.20 -0.25 3.27 15 18 O -0.32 -6.30 10.21 -34.49 -0.35 -6.65 15 19 C 0.41 6.26 5.98 101.05 0.60 6.87 15 20 F -0.20 -3.43 15.57 2.25 0.04 -3.39 15 21 F -0.20 -3.43 15.58 2.25 0.04 -3.40 15 22 H 0.03 0.53 8.14 -51.93 -0.42 0.11 15 23 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 24 H 0.04 0.84 8.14 -51.93 -0.42 0.41 15 25 H 0.30 7.82 6.78 -40.82 -0.28 7.54 15 26 H 0.12 3.20 6.52 -52.48 -0.34 2.86 15 27 H 0.12 2.65 5.05 -52.49 -0.27 2.39 15 28 H 0.17 1.56 8.14 -51.93 -0.42 1.13 15 LS Contribution 262.06 15.07 3.95 3.95 Total: -1.00 -28.32 262.06 -3.45 -31.77 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -1.78 Total: 3.42 kcal Atomic # 6 Polarization: -10.20 SS G_CDS: -0.64 Total: -10.84 kcal Atomic # 7 Polarization: -19.32 SS G_CDS: 0.68 Total: -18.63 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.67 Total: -14.30 kcal Atomic # 9 Polarization: -10.55 SS G_CDS: 0.11 Total: -10.44 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.10 Total: 15.07 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -28.32 -3.45 -31.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660309.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -189.076 kcal (2) G-P(sol) polarization free energy of solvation -28.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds