Wall clock time and date at job start Mon Mar 30 2020 06:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35766 * 117.00318 * 2 1 4 4 C 1.41180 * 120.20036 * 90.00307 * 3 2 1 5 5 C 1.41171 * 120.24931 * 0.02721 * 4 3 2 6 6 H 1.08003 * 119.99777 * 25.10691 * 5 4 3 7 7 C 1.39914 * 120.00202 * 205.10774 * 5 4 3 8 8 N 1.30878 * 119.99939 * 26.45661 * 7 5 4 9 9 Si 1.86803 * 120.00174 * 206.46160 * 7 5 4 10 10 H 1.48494 * 109.47177 * 179.97438 * 9 7 5 11 11 H 1.48500 * 109.46719 * 299.99815 * 9 7 5 12 12 H 1.48500 * 109.47293 * 59.99656 * 9 7 5 13 13 C 1.40771 * 119.49946 * 179.75011 * 4 3 2 14 14 C 1.37658 * 119.88074 * 0.25354 * 13 4 3 15 15 F 1.35104 * 119.80370 * 179.97438 * 14 13 4 16 16 C 1.39016 * 120.40256 * 0.02562 * 14 13 4 17 17 C 1.38661 * 120.50946 * 359.97438 * 16 14 13 18 18 O 1.36010 * 119.94274 * 179.97438 * 17 16 14 19 19 C 1.42897 * 117.00145 * 0.02562 * 18 17 16 20 20 F 1.39900 * 109.47063 * 299.99742 * 19 18 17 21 21 F 1.39895 * 109.46959 * 59.99851 * 19 18 17 22 22 H 1.08996 * 109.46964 * 59.99549 * 1 2 3 23 23 H 1.08997 * 109.47074 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46593 * 299.99443 * 1 2 3 25 25 H 0.96999 * 119.99330 * 5.88887 * 8 7 5 26 26 H 1.08005 * 120.05711 * 180.23420 * 13 4 3 27 27 H 1.07998 * 119.74120 * 179.97438 * 16 14 13 28 28 H 1.09003 * 109.47076 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 2.3679 1.8424 1.2202 5 6 2.0524 1.2217 2.4483 6 1 1.9510 0.1477 2.5002 7 6 1.8710 1.9979 3.5981 8 7 1.4800 3.2425 3.4926 9 14 2.1870 1.2580 5.2840 10 1 1.9250 2.2791 6.3298 11 1 1.2870 0.0949 5.4906 12 1 3.6006 0.8117 5.3717 13 6 3.0118 3.0941 1.2030 14 6 3.3164 3.6922 0.0011 15 9 3.9339 4.8937 -0.0136 16 6 2.9915 3.0678 -1.1977 17 6 2.3572 1.8348 -1.2000 18 8 2.0442 1.2345 -2.3796 19 6 2.3987 1.9308 -3.5760 20 9 1.7526 3.1713 -3.6025 21 9 3.7837 2.1255 -3.6092 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 1.2339 3.6016 2.6258 26 1 3.2661 3.5844 2.1311 27 1 3.2351 3.5468 -2.1345 28 1 2.0931 1.3438 -4.4422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575660309.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:25 Heat of formation + Delta-G solvation = -237.438795 kcal Electronic energy + Delta-G solvation = -20179.884833 eV Core-core repulsion = 16359.410973 eV Total energy + Delta-G solvation = -3820.473860 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.27605 -49.85979 -48.27983 -40.99791 -38.94007 -37.72978 -35.57756 -31.37094 -30.47963 -27.98048 -27.39754 -26.44501 -23.35966 -23.08571 -20.71448 -19.41623 -19.10403 -18.86196 -18.34056 -17.47404 -17.37552 -16.69195 -16.23862 -16.11074 -15.85620 -15.37373 -15.27024 -14.91206 -14.76644 -14.72360 -14.54879 -14.35428 -13.61903 -13.56977 -13.24029 -12.94196 -12.38299 -12.34840 -12.08490 -11.96157 -11.69202 -11.05537 -10.62479 -9.78475 -9.50873 -9.11733 -6.72123 0.34812 0.52379 1.51494 1.58723 1.71132 1.82608 2.26132 2.34051 2.56958 2.93986 3.29009 3.41413 3.62355 3.72447 4.12535 4.29680 4.34983 4.53934 4.64859 4.72488 4.86227 5.07608 5.26898 5.41515 5.47169 5.60238 5.86075 6.08134 6.27452 6.60626 6.97469 7.80945 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.025438 B = 0.007517 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.440606 B = 3724.118855 C = 4482.576639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.327 6.327 3 C -0.071 4.071 4 C 0.097 3.903 5 C -0.497 4.497 6 H 0.090 0.910 7 C 0.007 3.993 8 N -0.788 5.788 9 Si 1.119 2.881 10 H -0.270 1.270 11 H -0.251 1.251 12 H -0.262 1.262 13 C -0.281 4.281 14 C 0.148 3.852 15 F -0.154 7.154 16 C -0.352 4.352 17 C 0.155 3.845 18 O -0.322 6.322 19 C 0.401 3.599 20 F -0.213 7.213 21 F -0.212 7.212 22 H 0.037 0.963 23 H 0.111 0.889 24 H 0.026 0.974 25 H 0.287 0.713 26 H 0.111 0.889 27 H 0.134 0.866 28 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.634 -4.150 -7.318 8.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C -0.116 4.116 4 C 0.093 3.907 5 C -0.522 4.522 6 H 0.108 0.892 7 C -0.213 4.213 8 N -0.409 5.409 9 Si 0.934 3.066 10 H -0.194 1.194 11 H -0.175 1.175 12 H -0.186 1.186 13 C -0.301 4.301 14 C 0.129 3.871 15 F -0.132 7.132 16 C -0.372 4.372 17 C 0.110 3.890 18 O -0.240 6.240 19 C 0.312 3.688 20 F -0.195 7.195 21 F -0.194 7.194 22 H 0.055 0.945 23 H 0.129 0.871 24 H 0.045 0.955 25 H 0.100 0.900 26 H 0.129 0.871 27 H 0.151 0.849 28 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -1.606 -3.991 -5.774 7.201 hybrid contribution 0.105 0.859 -1.906 2.093 sum -1.501 -3.131 -7.680 8.429 Atomic orbital electron populations 1.22976 0.80571 1.03235 0.99266 1.85959 1.19798 1.24556 1.93987 1.17907 1.11687 0.93025 0.88997 1.17628 0.89887 0.90261 0.92898 1.20772 1.40664 0.97651 0.93144 0.89164 1.28703 0.90030 0.93351 1.09208 1.70597 1.24180 1.15175 1.30939 0.82991 0.79022 0.76212 0.68382 1.19396 1.17471 1.18638 1.20892 1.12393 1.01199 0.95599 1.17298 0.94777 0.80666 0.94379 1.91369 1.80735 1.43530 1.97609 1.20504 1.19807 0.99355 0.97562 1.18636 0.95430 0.90774 0.84122 1.86621 1.77542 1.47072 1.12757 1.24377 0.73397 0.80039 0.90946 1.93052 1.81510 1.48262 1.96653 1.93050 1.34235 1.95516 1.96611 0.94470 0.87067 0.95484 0.90014 0.87133 0.84876 0.74349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.27 11.13 113.37 1.26 2.53 15 2 O -0.33 -15.09 9.48 -76.85 -0.73 -15.82 15 3 C -0.07 -3.52 5.77 23.14 0.13 -3.38 15 4 C 0.10 5.13 5.30 -21.22 -0.11 5.02 15 5 C -0.50 -25.33 8.63 23.40 0.20 -25.13 15 6 H 0.09 4.54 7.72 -2.91 -0.02 4.51 15 7 C 0.01 0.32 4.91 85.24 0.42 0.74 15 8 N -0.79 -40.26 12.32 21.82 0.27 -40.00 15 9 Si 1.12 39.96 30.01 68.60 2.06 42.02 15 10 H -0.27 -9.49 7.11 99.48 0.71 -8.79 15 11 H -0.25 -8.09 7.11 99.48 0.71 -7.38 15 12 H -0.26 -8.97 7.11 99.48 0.71 -8.26 15 13 C -0.28 -14.70 7.94 22.75 0.18 -14.52 15 14 C 0.15 7.36 7.28 22.32 0.16 7.52 15 15 F -0.15 -7.25 17.26 44.97 0.78 -6.47 15 16 C -0.35 -16.34 8.24 22.56 0.19 -16.16 15 17 C 0.15 7.10 6.49 22.52 0.15 7.25 15 18 O -0.32 -12.10 10.21 -79.58 -0.81 -12.91 15 19 C 0.40 11.00 5.98 113.37 0.68 11.68 15 20 F -0.21 -6.65 15.57 44.97 0.70 -5.95 15 21 F -0.21 -6.68 15.58 44.97 0.70 -5.98 15 22 H 0.04 1.30 8.14 -2.39 -0.02 1.28 15 23 H 0.11 3.26 8.14 -2.39 -0.02 3.24 15 24 H 0.03 1.06 8.14 -2.39 -0.02 1.05 15 25 H 0.29 15.43 6.78 -92.71 -0.63 14.80 15 26 H 0.11 5.97 6.52 -2.91 -0.02 5.95 15 27 H 0.13 5.73 5.05 -2.91 -0.01 5.72 15 28 H 0.24 3.15 8.14 -2.39 -0.02 3.13 15 Total: -1.00 -61.90 262.06 7.58 -54.32 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 1.36 Total: 15.24 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 3.26 Total: -24.45 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.27 Total: -40.00 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -1.54 Total: -28.73 kcal Atomic # 9 Polarization: -20.58 SS G_CDS: 2.18 Total: -18.40 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.06 Total: 42.02 kcal Total: -61.90 7.58 -54.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660309.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.121 kcal (2) G-P(sol) polarization free energy of solvation -61.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -245.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds