Wall clock time and date at job start Mon Mar 30 2020 06:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35998 * 117.00204 * 2 1 4 4 C 1.38665 * 119.94847 * 0.02562 * 3 2 1 5 5 C 1.39012 * 120.51662 * 179.97438 * 4 3 2 6 6 F 1.35102 * 119.79925 * 180.02562 * 5 4 3 7 7 C 1.37658 * 120.39951 * 0.02562 * 5 4 3 8 8 C 1.40774 * 119.88355 * 0.02562 * 7 5 4 9 9 C 1.41170 * 120.25438 * 179.97438 * 8 7 5 10 10 H 1.08003 * 120.00048 * 205.39220 * 9 8 7 11 11 C 1.39914 * 119.99810 * 25.38573 * 9 8 7 12 12 N 1.30872 * 120.00146 * 17.11454 * 11 9 8 13 13 Si 1.86803 * 119.99744 * 197.11094 * 11 9 8 14 14 H 1.48504 * 109.47273 * 265.18979 * 13 11 9 15 15 H 1.48502 * 109.46991 * 25.19069 * 13 11 9 16 16 H 1.48499 * 109.46918 * 145.19020 * 13 11 9 17 17 C 1.38846 * 119.94650 * 180.30541 * 3 2 1 18 18 O 1.35766 * 120.20215 * 359.97438 * 17 3 2 19 19 C 1.42903 * 116.99714 * 270.29990 * 18 17 3 20 20 F 1.39900 * 109.47431 * 299.99790 * 19 18 17 21 21 F 1.39899 * 109.46909 * 60.00130 * 19 18 17 22 22 H 1.08997 * 109.46983 * 300.00098 * 1 2 3 23 23 H 1.09006 * 109.46824 * 59.99680 * 1 2 3 24 24 H 1.09003 * 109.47225 * 179.97438 * 1 2 3 25 25 H 1.07998 * 119.74339 * 0.02562 * 4 3 2 26 26 H 1.08002 * 120.05982 * 180.02562 * 7 5 4 27 27 H 0.97005 * 119.99749 * 180.02562 * 12 11 9 28 28 H 1.09003 * 109.47258 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2903 2.3740 0.0005 5 6 1.9091 3.6188 0.0011 6 9 1.1582 4.7419 0.0021 7 6 3.2824 3.7140 0.0006 8 6 4.0665 2.5449 -0.0011 9 6 5.4754 2.6334 -0.0022 10 1 6.0670 1.8243 -0.4044 11 6 6.1054 3.7694 0.5177 12 7 5.4425 4.5870 1.2954 13 14 7.8927 4.1189 0.1019 14 1 8.7657 3.5747 1.1728 15 1 8.2351 3.4742 -1.1913 16 1 8.0979 5.5856 -0.0065 17 6 3.4331 1.2831 -0.0064 18 8 4.1754 0.1463 -0.0122 19 6 4.5305 -0.4030 1.2584 20 9 5.2817 0.5328 1.9776 21 9 3.3688 -0.7162 1.9721 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 0.2121 2.3117 0.0014 26 1 3.7574 4.6839 0.0014 27 1 5.8792 5.3748 1.6556 28 1 5.1218 -1.3068 1.1111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575660639.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:05 Heat of formation + Delta-G solvation = -234.808493 kcal Electronic energy + Delta-G solvation = -20420.347781 eV Core-core repulsion = 16599.987980 eV Total energy + Delta-G solvation = -3820.359801 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.68891 -49.65105 -47.80010 -40.84951 -38.79536 -37.40751 -35.35616 -31.49554 -30.34998 -28.21406 -27.40190 -26.06151 -23.10446 -22.71594 -19.98488 -19.38265 -18.73698 -18.50563 -18.18869 -17.44801 -17.03501 -16.66872 -16.33096 -16.23479 -16.11202 -15.32090 -14.83200 -14.70605 -14.31102 -14.22457 -14.11923 -13.94900 -13.48426 -13.09850 -12.84569 -12.69899 -12.53052 -12.35801 -12.19273 -12.01432 -11.62167 -11.34539 -11.02903 -9.53045 -8.95498 -8.75982 -6.57118 0.45016 0.80498 1.39157 1.47809 1.56464 2.15692 2.33363 2.51709 2.72011 3.04066 3.45603 3.64711 4.04904 4.13549 4.30340 4.39506 4.43251 4.65155 4.67942 4.73982 4.92378 5.10944 5.41498 5.53890 5.72028 5.83241 6.16082 6.37134 6.54189 6.69387 6.93181 8.12952 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.018738 B = 0.010075 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.941451 B = 2778.475594 C = 3930.468937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.322 6.322 3 C 0.183 3.817 4 C -0.363 4.363 5 C 0.136 3.864 6 F -0.157 7.157 7 C -0.241 4.241 8 C 0.128 3.872 9 C -0.435 4.435 10 H 0.091 0.909 11 C 0.036 3.964 12 N -0.800 5.800 13 Si 0.989 3.011 14 H -0.260 1.260 15 H -0.251 1.251 16 H -0.262 1.262 17 C -0.121 4.121 18 O -0.314 6.314 19 C 0.381 3.619 20 F -0.219 7.219 21 F -0.224 7.224 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.124 0.876 25 H 0.141 0.859 26 H 0.121 0.879 27 H 0.297 0.703 28 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.166 -6.032 -0.834 6.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.235 6.235 3 C 0.137 3.863 4 C -0.383 4.383 5 C 0.116 3.884 6 F -0.136 7.136 7 C -0.261 4.261 8 C 0.123 3.877 9 C -0.461 4.461 10 H 0.109 0.891 11 C -0.183 4.183 12 N -0.423 5.423 13 Si 0.808 3.192 14 H -0.184 1.184 15 H -0.174 1.174 16 H -0.187 1.187 17 C -0.166 4.166 18 O -0.233 6.233 19 C 0.292 3.708 20 F -0.201 7.201 21 F -0.206 7.206 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.142 0.858 25 H 0.158 0.842 26 H 0.139 0.861 27 H 0.108 0.892 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -1.063 -6.054 -0.792 6.198 hybrid contribution -0.020 0.910 0.461 1.020 sum -1.083 -5.145 -0.330 5.268 Atomic orbital electron populations 1.23272 0.77253 1.05144 1.01674 1.86089 1.22919 1.26154 1.88373 1.18724 0.90606 0.84208 0.92805 1.20341 0.99862 0.90011 1.28118 1.17485 0.88862 0.81429 1.00599 1.91349 1.76845 1.51174 1.94186 1.21054 0.90586 1.00010 1.14491 1.17538 0.94421 0.88809 0.86883 1.19778 0.91052 1.02961 1.32344 0.89093 1.26994 1.05972 0.93808 0.91526 1.69881 1.41006 1.11182 1.20191 0.85075 0.74979 0.78816 0.80309 1.18438 1.17449 1.18665 1.17854 0.85946 0.85838 1.26967 1.86550 1.70290 1.39637 1.26848 1.24434 0.78974 0.90510 0.76920 1.93058 1.76604 1.70428 1.80023 1.92982 1.54142 1.93105 1.80346 0.92817 0.92156 0.85767 0.84178 0.86074 0.89175 0.77584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.81 113.37 1.11 1.71 15 2 O -0.32 -13.04 9.69 -79.45 -0.77 -13.81 15 3 C 0.18 8.58 6.43 22.52 0.14 8.72 15 4 C -0.36 -16.51 9.02 22.56 0.20 -16.30 15 5 C 0.14 6.72 7.28 22.32 0.16 6.88 15 6 F -0.16 -7.29 17.26 44.97 0.78 -6.51 15 7 C -0.24 -12.86 8.65 22.75 0.20 -12.67 15 8 C 0.13 6.85 5.45 -21.22 -0.12 6.73 15 9 C -0.43 -22.39 7.44 23.40 0.17 -22.22 15 10 H 0.09 4.55 7.65 -2.91 -0.02 4.53 15 11 C 0.04 1.72 5.15 85.24 0.44 2.16 15 12 N -0.80 -40.11 10.97 21.82 0.24 -39.87 15 13 Si 0.99 35.88 29.59 68.60 2.03 37.91 15 14 H -0.26 -9.12 7.11 99.48 0.71 -8.41 15 15 H -0.25 -8.86 7.11 99.48 0.71 -8.15 15 16 H -0.26 -9.01 7.11 99.48 0.71 -8.31 15 17 C -0.12 -6.13 5.38 23.14 0.12 -6.01 15 18 O -0.31 -14.40 9.43 -76.84 -0.72 -15.13 15 19 C 0.38 14.69 6.35 113.37 0.72 15.41 15 20 F -0.22 -9.82 15.83 44.97 0.71 -9.11 15 21 F -0.22 -9.14 16.41 44.97 0.74 -8.40 15 22 H 0.05 1.48 7.65 -2.39 -0.02 1.47 15 23 H 0.06 1.59 7.66 -2.38 -0.02 1.57 15 24 H 0.12 2.62 8.14 -2.39 -0.02 2.60 15 25 H 0.14 5.44 6.26 -2.91 -0.02 5.42 15 26 H 0.12 6.65 6.19 -2.91 -0.02 6.63 15 27 H 0.30 13.29 8.30 -92.70 -0.77 12.52 15 28 H 0.21 5.28 8.14 -2.39 -0.02 5.26 15 Total: -1.00 -62.74 261.45 7.38 -55.36 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: 1.22 Total: 15.14 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 3.16 Total: -15.58 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.24 Total: -39.87 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -1.49 Total: -28.94 kcal Atomic # 9 Polarization: -26.25 SS G_CDS: 2.23 Total: -24.02 kcal Atomic # 14 Polarization: 35.88 SS G_CDS: 2.03 Total: 37.91 kcal Total: -62.74 7.38 -55.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660639.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.446 kcal (2) G-P(sol) polarization free energy of solvation -62.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds