Wall clock time and date at job start Mon Mar 30 2020 06:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35995 * 117.00066 * 2 1 4 4 C 1.37708 * 119.92001 * 359.97438 * 3 2 1 5 5 C 1.40796 * 119.79164 * 179.97438 * 4 3 2 6 6 C 1.41111 * 120.17718 * 179.97438 * 5 4 3 7 7 H 1.07998 * 119.99815 * 204.67471 * 6 5 4 8 8 C 1.39851 * 120.00189 * 24.66990 * 6 5 4 9 9 N 1.30918 * 119.99793 * 17.84472 * 8 6 5 10 10 Si 1.86800 * 120.00312 * 197.84643 * 8 6 5 11 11 H 1.48504 * 109.47086 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47408 * 119.99998 * 10 8 6 13 13 H 1.48505 * 109.46889 * 240.00458 * 10 8 6 14 14 C 1.41134 * 119.64668 * 359.97438 * 5 4 3 15 15 F 1.35099 * 120.08144 * 179.97438 * 14 5 4 16 16 C 1.37742 * 119.83953 * 0.04487 * 14 5 4 17 17 C 1.39036 * 120.20436 * 359.95653 * 16 14 5 18 18 O 1.35746 * 119.81888 * 180.02562 * 17 16 14 19 19 C 1.42900 * 116.99799 * 359.97062 * 18 17 16 20 20 F 1.39900 * 109.47040 * 300.00201 * 19 18 17 21 21 F 1.39898 * 109.46856 * 60.00431 * 19 18 17 22 22 H 1.09007 * 109.46537 * 60.00312 * 1 2 3 23 23 H 1.09000 * 109.47192 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47298 * 300.00440 * 1 2 3 25 25 H 1.07999 * 120.10533 * 359.70618 * 4 3 2 26 26 H 0.97005 * 119.99673 * 179.97438 * 9 8 6 27 27 H 1.07997 * 119.89525 * 179.97438 * 16 14 5 28 28 H 1.09002 * 109.46848 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2948 2.3656 -0.0005 5 6 1.9368 3.6187 0.0000 6 6 1.1746 4.8062 -0.0011 7 1 1.5987 5.7196 -0.3912 8 6 -0.1299 4.8003 0.5029 9 7 -0.5269 3.8245 1.2802 10 14 -1.3059 6.1847 0.0671 11 1 -0.6182 7.1578 -0.8192 12 1 -2.4896 5.6262 -0.6344 13 1 -1.7445 6.8710 1.3088 14 6 3.3468 3.6807 0.0017 15 9 3.9720 4.8783 0.0017 16 6 4.0840 2.5171 0.0018 17 6 3.4433 1.2832 0.0012 18 8 4.1775 0.1414 0.0018 19 6 5.5993 0.2844 0.0025 20 9 5.9978 0.9870 -1.1398 21 9 5.9967 0.9875 1.1448 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 0.2163 2.3096 -0.0057 26 1 -1.4317 3.8206 1.6301 27 1 5.1630 2.5635 0.0026 28 1 6.0637 -0.7018 0.0025 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575660661.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:29 Heat of formation + Delta-G solvation = -230.278916 kcal Electronic energy + Delta-G solvation = -20054.412177 eV Core-core repulsion = 16234.248793 eV Total energy + Delta-G solvation = -3820.163384 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.060 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.15559 -49.30338 -48.16393 -40.93923 -39.03790 -37.66532 -35.32233 -31.52260 -30.48268 -28.47770 -27.47259 -26.05546 -23.30047 -22.74260 -20.05305 -19.84532 -18.81738 -18.72747 -18.09529 -17.46181 -17.22798 -16.66446 -16.51155 -16.00156 -15.80445 -15.23599 -15.17622 -14.79857 -14.62681 -14.44253 -14.41680 -14.15500 -13.55537 -13.33447 -13.09938 -12.75892 -12.64542 -12.52252 -12.22688 -12.11644 -11.61132 -11.54038 -10.98831 -9.53526 -8.94083 -8.65360 -6.48432 0.61133 0.64990 1.37955 1.44114 1.53738 1.98396 2.17087 2.46913 2.52009 2.70495 3.31161 3.65012 3.85870 3.88298 4.02321 4.42847 4.48445 4.50263 4.67251 4.80915 4.84826 5.04550 5.12580 5.45074 5.73312 5.83742 6.05685 6.25794 6.52159 6.65621 6.83767 8.16633 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.024509 B = 0.007446 C = 0.006021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.143008 B = 3759.278877 C = 4649.377071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.327 6.327 3 C 0.125 3.875 4 C -0.222 4.222 5 C 0.074 3.926 6 C -0.479 4.479 7 H 0.077 0.923 8 C 0.042 3.958 9 N -0.806 5.806 10 Si 0.988 3.012 11 H -0.263 1.263 12 H -0.254 1.254 13 H -0.262 1.262 14 C -0.058 4.058 15 F -0.163 7.163 16 C -0.149 4.149 17 C -0.036 4.036 18 O -0.321 6.321 19 C 0.400 3.600 20 F -0.217 7.217 21 F -0.218 7.218 22 H 0.049 0.951 23 H 0.128 0.872 24 H 0.048 0.952 25 H 0.147 0.853 26 H 0.297 0.703 27 H 0.134 0.866 28 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.679 -6.948 -1.714 7.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.242 6.242 3 C 0.080 3.920 4 C -0.243 4.243 5 C 0.070 3.930 6 C -0.507 4.507 7 H 0.095 0.905 8 C -0.176 4.176 9 N -0.431 5.431 10 Si 0.808 3.192 11 H -0.186 1.186 12 H -0.178 1.178 13 H -0.187 1.187 14 C -0.078 4.078 15 F -0.142 7.142 16 C -0.169 4.169 17 C -0.079 4.079 18 O -0.240 6.240 19 C 0.311 3.689 20 F -0.199 7.199 21 F -0.200 7.200 22 H 0.068 0.932 23 H 0.146 0.854 24 H 0.067 0.933 25 H 0.165 0.835 26 H 0.109 0.891 27 H 0.152 0.848 28 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.537 -7.338 -1.559 7.658 hybrid contribution -0.142 1.390 0.027 1.398 sum 1.395 -5.948 -1.532 6.299 Atomic orbital electron populations 1.23157 0.77346 1.04719 1.01328 1.85972 1.22590 1.26209 1.89380 1.18214 0.88633 0.85258 0.99923 1.21113 1.00339 0.89403 1.13396 1.17750 0.89424 0.94996 0.90799 1.19695 0.98759 0.96004 1.36222 0.90513 1.26774 0.99405 0.99987 0.91403 1.69845 1.20050 1.32177 1.21037 0.85061 0.77309 0.77444 0.79395 1.18648 1.17776 1.18701 1.17674 0.90984 0.79667 1.19492 1.91246 1.82664 1.44835 1.95497 1.20740 0.99509 0.90559 1.06045 1.17281 0.87841 0.84188 1.18586 1.86447 1.17474 1.29845 1.90256 1.24273 0.80144 0.93698 0.70792 1.93035 1.90646 1.83182 1.53022 1.93037 1.90692 1.83162 1.53108 0.93209 0.85405 0.93305 0.83522 0.89140 0.84825 0.74820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.81 113.37 1.11 2.07 15 2 O -0.33 -13.83 10.27 -79.51 -0.82 -14.65 15 3 C 0.13 6.03 6.70 22.54 0.15 6.19 15 4 C -0.22 -11.37 7.65 22.77 0.17 -11.20 15 5 C 0.07 4.06 5.58 -21.24 -0.12 3.94 15 6 C -0.48 -25.77 8.76 23.37 0.20 -25.56 15 7 H 0.08 4.14 7.73 -2.91 -0.02 4.12 15 8 C 0.04 2.00 5.13 85.22 0.44 2.44 15 9 N -0.81 -38.95 10.97 21.81 0.24 -38.71 15 10 Si 0.99 36.16 29.60 68.60 2.03 38.19 15 11 H -0.26 -9.75 7.11 99.48 0.71 -9.05 15 12 H -0.25 -8.60 7.11 99.48 0.71 -7.90 15 13 H -0.26 -9.17 7.11 99.48 0.71 -8.47 15 14 C -0.06 -3.11 7.30 22.86 0.17 -2.95 15 15 F -0.16 -8.71 16.70 44.97 0.75 -7.95 15 16 C -0.15 -7.26 8.19 22.34 0.18 -7.08 15 17 C -0.04 -1.68 6.52 22.86 0.15 -1.53 15 18 O -0.32 -12.61 10.20 -76.72 -0.78 -13.39 15 19 C 0.40 11.71 5.98 113.37 0.68 12.39 15 20 F -0.22 -7.12 15.56 44.97 0.70 -6.42 15 21 F -0.22 -7.29 15.56 44.97 0.70 -6.59 15 22 H 0.05 1.62 7.65 -2.38 -0.02 1.60 15 23 H 0.13 3.07 8.14 -2.39 -0.02 3.05 15 24 H 0.05 1.70 7.66 -2.39 -0.02 1.68 15 25 H 0.15 7.29 4.38 -2.91 -0.01 7.28 15 26 H 0.30 12.59 8.30 -92.70 -0.77 11.82 15 27 H 0.13 6.02 5.05 -2.91 -0.01 6.01 15 28 H 0.24 3.54 8.14 -2.39 -0.02 3.52 15 Total: -1.00 -64.33 258.85 7.18 -57.14 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 1.23 Total: 13.67 kcal Atomic # 6 Polarization: -24.43 SS G_CDS: 3.14 Total: -21.29 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.24 Total: -38.71 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -1.60 Total: -28.04 kcal Atomic # 9 Polarization: -23.11 SS G_CDS: 2.15 Total: -20.96 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -64.33 7.18 -57.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575660661.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.137 kcal (2) G-P(sol) polarization free energy of solvation -64.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds