Wall clock time and date at job start Mon Mar 30 2020 06:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99981 * 2 1 4 4 H 1.48497 * 109.47241 * 270.00748 * 3 2 1 5 5 H 1.48501 * 109.46703 * 30.00186 * 3 2 1 6 6 H 1.48499 * 109.47580 * 150.00308 * 3 2 1 7 7 C 1.37879 * 120.00309 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00050 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99983 * 179.97438 * 7 2 1 10 10 H 1.09001 * 109.47207 * 59.99705 * 9 7 2 11 11 N 1.46898 * 109.47024 * 299.99631 * 9 7 2 12 12 C 1.50700 * 109.47128 * 179.97438 * 9 7 2 13 13 C 1.39233 * 119.11372 * 124.99875 * 12 9 7 14 14 C 1.36755 * 119.91611 * 179.97438 * 13 12 9 15 15 Cl 1.73596 * 120.93395 * 180.02562 * 14 13 12 16 16 C 1.40903 * 118.12619 * 359.97438 * 14 13 12 17 17 C 1.40380 * 121.37898 * 180.02562 * 16 14 13 18 18 C 1.36159 * 119.62018 * 180.02562 * 17 16 14 19 19 C 1.39340 * 120.85363 * 359.95357 * 18 17 16 20 20 C 1.36081 * 121.06479 * 0.02783 * 19 18 17 21 21 C 1.40587 * 119.75099 * 359.97438 * 20 19 18 22 22 N 1.31123 * 119.11185 * 304.95528 * 12 9 7 23 23 H 0.96993 * 120.00507 * 359.97438 * 1 2 3 24 24 H 1.00904 * 111.00233 * 176.04660 * 11 9 7 25 25 H 1.00899 * 110.99945 * 299.99876 * 11 9 7 26 26 H 1.07990 * 120.04361 * 0.24965 * 13 12 9 27 27 H 1.08006 * 120.19190 * 359.94590 * 17 16 14 28 28 H 1.07993 * 119.57574 * 179.97438 * 18 17 16 29 29 H 1.08003 * 119.46929 * 180.02562 * 19 18 17 30 30 H 1.08004 * 120.12957 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8753 -0.6802 0.8888 11 7 4.0007 -0.5012 -1.2006 12 6 4.0140 -2.6147 -0.0010 13 6 4.8972 -3.0210 -0.9977 14 6 5.3639 -4.3064 -1.0130 15 17 6.4663 -4.8410 -2.2428 16 6 4.9255 -5.1843 -0.0018 17 6 5.3615 -6.5177 0.0482 18 6 4.9145 -7.3352 1.0411 19 6 4.0300 -6.8652 2.0098 20 6 3.5876 -5.5784 1.9915 21 6 4.0266 -4.7040 0.9820 22 7 3.6083 -3.4348 0.9383 23 1 -0.4850 0.8399 0.0004 24 1 5.0073 -0.4311 -1.1925 25 1 3.6769 -0.9587 -2.0396 26 1 5.2169 -2.3208 -1.7551 27 1 6.0466 -6.8934 -0.6975 28 1 5.2501 -8.3609 1.0786 29 1 3.6901 -7.5329 2.7877 30 1 2.9024 -5.2299 2.7502 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713726777.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:28 Heat of formation + Delta-G solvation = 30.480762 kcal Electronic energy + Delta-G solvation = -16740.489510 eV Core-core repulsion = 13946.492170 eV Total energy + Delta-G solvation = -2793.997340 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.94030 -38.77573 -37.96195 -36.13509 -34.25381 -33.90916 -31.13571 -30.99901 -28.50324 -25.64367 -24.74138 -23.08432 -22.42828 -19.14760 -18.86716 -18.50542 -17.80299 -16.81858 -16.08949 -15.87683 -15.62033 -15.58377 -15.08405 -14.95960 -14.51046 -14.15979 -13.78206 -13.46776 -12.98683 -12.70960 -12.63131 -12.58884 -12.34619 -11.96632 -11.74913 -11.46687 -11.12619 -10.75723 -10.51292 -9.76548 -9.51390 -9.20934 -8.22586 -6.36007 -0.71738 -0.25483 0.72593 0.85906 1.53829 1.60837 1.73520 1.91520 2.54146 3.00117 3.09770 3.28827 3.49749 3.61058 3.80952 4.00014 4.15306 4.17809 4.36160 4.41538 4.44280 4.65752 4.96255 4.96832 5.05072 5.32247 5.39245 5.43682 5.53288 5.86194 6.11884 6.31916 6.74122 6.90200 7.05699 7.38066 8.91178 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.024207 B = 0.006536 C = 0.005382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.394407 B = 4283.029780 C = 5201.137082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.025 3.975 3 Si 1.004 2.996 4 H -0.269 1.269 5 H -0.324 1.324 6 H -0.259 1.259 7 C -0.504 4.504 8 H 0.025 0.975 9 C 0.236 3.764 10 H 0.057 0.943 11 N -0.836 5.836 12 C 0.155 3.845 13 C -0.175 4.175 14 C 0.021 3.979 15 Cl -0.027 7.027 16 C -0.126 4.126 17 C -0.100 4.100 18 C -0.108 4.108 19 C -0.082 4.082 20 C -0.120 4.120 21 C 0.113 3.887 22 N -0.492 5.492 23 H 0.265 0.735 24 H 0.340 0.660 25 H 0.346 0.654 26 H 0.164 0.836 27 H 0.151 0.849 28 H 0.171 0.829 29 H 0.167 0.833 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.745 -14.034 -1.188 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.174 4.174 3 Si 0.833 3.167 4 H -0.195 1.195 5 H -0.255 1.255 6 H -0.184 1.184 7 C -0.543 4.543 8 H 0.044 0.956 9 C 0.125 3.875 10 H 0.074 0.926 11 N -0.369 5.369 12 C 0.000 4.000 13 C -0.196 4.196 14 C -0.014 4.014 15 Cl 0.002 6.998 16 C -0.129 4.129 17 C -0.119 4.119 18 C -0.126 4.126 19 C -0.101 4.101 20 C -0.139 4.139 21 C -0.010 4.010 22 N -0.201 5.201 23 H 0.074 0.926 24 H 0.155 0.845 25 H 0.161 0.839 26 H 0.182 0.818 27 H 0.168 0.832 28 H 0.188 0.812 29 H 0.185 0.815 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 14.720 -13.169 -0.360 19.754 hybrid contribution 0.669 -0.188 -0.928 1.159 sum 15.388 -13.357 -1.288 20.417 Atomic orbital electron populations 1.70083 1.08658 1.28245 1.51870 1.25895 0.95274 1.03691 0.92501 0.84806 0.77379 0.76102 0.78440 1.19492 1.25459 1.18351 1.20745 0.89212 0.92762 1.51538 0.95647 1.18286 0.94114 0.83643 0.91435 0.92582 1.59043 1.15188 1.57474 1.05217 1.22861 0.89915 0.98329 0.88870 1.21802 0.99824 0.96322 1.01614 1.21090 0.94579 0.93918 0.91823 1.98358 1.60035 1.90098 1.51281 1.18870 1.00946 0.96823 0.96220 1.21267 0.99880 0.90704 1.00028 1.21379 0.96365 1.01541 0.93312 1.21362 0.95336 0.94289 0.99127 1.21035 1.01162 0.94035 0.97633 1.19502 0.94778 0.91141 0.95548 1.67930 1.23055 1.03425 1.25719 0.92610 0.84511 0.83875 0.81846 0.83152 0.81196 0.81526 0.85017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 2 C 0.03 1.49 5.47 84.66 0.46 1.95 16 3 Si 1.00 48.90 26.03 68.60 1.79 50.69 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.32 -16.05 7.11 99.48 0.71 -15.35 16 6 H -0.26 -11.83 6.54 99.48 0.65 -11.18 16 7 C -0.50 -29.36 9.09 25.60 0.23 -29.13 16 8 H 0.03 1.69 7.91 -2.91 -0.02 1.67 16 9 C 0.24 10.96 2.58 43.42 0.11 11.07 16 10 H 0.06 2.72 7.20 -2.39 -0.02 2.71 16 11 N -0.84 -32.00 6.05 -174.95 -1.06 -33.06 16 12 C 0.15 6.57 6.12 42.90 0.26 6.83 16 13 C -0.17 -5.87 8.79 22.16 0.19 -5.68 16 14 C 0.02 0.63 6.37 22.57 0.14 0.77 16 15 Cl -0.03 -0.61 27.66 -2.72 -0.08 -0.69 16 16 C -0.13 -3.94 5.74 -21.26 -0.12 -4.07 16 17 C -0.10 -2.30 9.46 22.31 0.21 -2.09 16 18 C -0.11 -1.98 9.96 22.05 0.22 -1.76 16 19 C -0.08 -1.69 9.94 22.03 0.22 -1.47 16 20 C -0.12 -3.64 9.98 22.34 0.22 -3.42 16 21 C 0.11 4.19 6.60 40.27 0.27 4.45 16 22 N -0.49 -22.07 9.90 -176.83 -1.75 -23.82 16 23 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 24 H 0.34 10.26 8.06 -89.69 -0.72 9.53 16 25 H 0.35 12.68 8.24 -89.69 -0.74 11.94 16 26 H 0.16 4.54 6.12 -2.92 -0.02 4.52 16 27 H 0.15 2.73 7.07 -2.91 -0.02 2.71 16 28 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 30 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -73.62 271.54 1.31 -72.31 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -0.32 Total: 17.54 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 2.43 Total: -22.52 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -2.51 Total: -117.33 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 1.79 Total: 50.69 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.69 kcal Total: -73.62 1.31 -72.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713726777.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.794 kcal (2) G-P(sol) polarization free energy of solvation -73.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds