Wall clock time and date at job start Mon Mar 30 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00003 * 2 1 4 4 H 1.48501 * 109.46882 * 269.99956 * 3 2 1 5 5 H 1.48499 * 109.46811 * 29.99800 * 3 2 1 6 6 H 1.48502 * 109.47220 * 150.00184 * 3 2 1 7 7 C 1.37875 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00197 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00546 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.46496 * 300.00158 * 9 7 2 11 11 N 1.46895 * 109.46824 * 59.99964 * 9 7 2 12 12 C 1.50697 * 109.47291 * 180.02562 * 9 7 2 13 13 C 1.39232 * 119.11132 * 125.01910 * 12 9 7 14 14 C 1.36755 * 119.91897 * 179.97438 * 13 12 9 15 15 Cl 1.73591 * 120.93984 * 179.97438 * 14 13 12 16 16 C 1.40913 * 118.12356 * 359.73428 * 14 13 12 17 17 C 1.40378 * 121.37999 * 179.69296 * 16 14 13 18 18 C 1.36156 * 119.61427 * 180.30679 * 17 16 14 19 19 C 1.39342 * 120.86327 * 0.27637 * 18 17 16 20 20 C 1.36082 * 121.05760 * 359.97438 * 19 18 17 21 21 C 1.40579 * 119.75031 * 0.02562 * 20 19 18 22 22 N 1.31116 * 119.11516 * 304.99958 * 12 9 7 23 23 H 0.96999 * 120.00203 * 0.02562 * 1 2 3 24 24 H 1.00900 * 111.00379 * 60.00335 * 11 9 7 25 25 H 1.00902 * 110.99722 * 183.95818 * 11 9 7 26 26 H 1.07995 * 120.04482 * 0.02562 * 13 12 9 27 27 H 1.08002 * 120.19488 * 0.58723 * 17 16 14 28 28 H 1.08007 * 119.57234 * 180.25573 * 18 17 16 29 29 H 1.07997 * 119.46981 * 179.97438 * 19 18 17 30 30 H 1.08002 * 120.12802 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8751 -0.6804 -0.8889 11 7 4.0007 -0.5013 1.2006 12 6 4.0138 -2.6149 0.0010 13 6 4.8981 -3.0206 -0.9950 14 6 5.3648 -4.3060 -1.0106 15 17 6.4675 -4.8403 -2.2402 16 6 4.9292 -5.1831 0.0027 17 6 5.3600 -6.5184 0.0485 18 6 4.9114 -7.3363 1.0403 19 6 4.0253 -6.8671 2.0079 20 6 3.5837 -5.5801 1.9903 21 6 4.0243 -4.7051 0.9821 22 7 3.6067 -3.4356 0.9390 23 1 -0.4850 0.8400 -0.0004 24 1 3.6769 -0.9587 2.0397 25 1 5.0072 -0.4312 1.1924 26 1 5.2159 -2.3210 -1.7538 27 1 6.0467 -6.8935 -0.6958 28 1 5.2465 -8.3625 1.0773 29 1 3.6836 -7.5356 2.7843 30 1 2.8972 -5.2321 2.7480 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713726779.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:30 Heat of formation + Delta-G solvation = 54.661707 kcal Electronic energy + Delta-G solvation = -16729.783085 eV Core-core repulsion = 13936.834310 eV Total energy + Delta-G solvation = -2792.948775 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.66520 -37.41040 -36.79234 -34.36667 -32.91283 -31.77028 -30.17749 -29.61747 -26.50720 -24.27389 -23.45232 -21.96750 -20.59994 -18.04212 -17.38792 -16.65079 -16.23026 -14.79377 -14.64971 -14.46460 -14.42275 -14.00294 -13.88209 -13.41018 -13.23035 -12.38089 -12.33940 -11.97584 -11.66727 -11.51259 -11.42343 -11.01619 -10.73780 -10.28979 -10.02363 -9.95150 -9.33503 -9.06343 -8.55263 -8.52192 -8.06330 -7.26769 -5.98289 -4.07751 0.47009 0.96999 1.94856 2.03865 3.08266 3.51049 3.62194 3.92272 4.26540 4.51501 4.70806 4.75087 4.77249 4.88557 5.17881 5.28522 5.32639 5.42886 5.61268 5.72344 5.88375 5.94532 6.04110 6.19212 6.35945 6.46223 6.65077 6.75519 6.97710 7.50079 8.11913 8.29007 8.36911 8.69267 9.04288 9.63846 11.11450 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.024128 B = 0.006410 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.211866 B = 4367.440569 C = 5124.648336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.085 3.915 3 Si 0.865 3.135 4 H -0.297 1.297 5 H -0.303 1.303 6 H -0.193 1.193 7 C -0.511 4.511 8 H 0.073 0.927 9 C 0.231 3.769 10 H 0.054 0.946 11 N -0.825 5.825 12 C 0.176 3.824 13 C -0.153 4.153 14 C 0.012 3.988 15 Cl -0.061 7.061 16 C -0.112 4.112 17 C -0.095 4.095 18 C -0.124 4.124 19 C -0.106 4.106 20 C -0.088 4.088 21 C 0.142 3.858 22 N -0.446 5.446 23 H 0.263 0.737 24 H 0.340 0.660 25 H 0.305 0.695 26 H 0.145 0.855 27 H 0.128 0.872 28 H 0.124 0.876 29 H 0.128 0.872 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.249 -11.972 0.560 17.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.119 4.119 3 Si 0.691 3.309 4 H -0.224 1.224 5 H -0.230 1.230 6 H -0.114 1.114 7 C -0.550 4.550 8 H 0.091 0.909 9 C 0.121 3.879 10 H 0.072 0.928 11 N -0.354 5.354 12 C 0.021 3.979 13 C -0.174 4.174 14 C -0.022 4.022 15 Cl -0.032 7.032 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.142 4.142 19 C -0.125 4.125 20 C -0.107 4.107 21 C 0.019 3.981 22 N -0.155 5.155 23 H 0.072 0.928 24 H 0.154 0.846 25 H 0.116 0.884 26 H 0.162 0.838 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.191 -11.079 0.907 16.498 hybrid contribution 1.301 -0.516 -0.772 1.599 sum 13.492 -11.595 0.136 17.790 Atomic orbital electron populations 1.69948 1.06929 1.27324 1.49219 1.24957 0.94542 0.99949 0.92494 0.87232 0.84652 0.81188 0.77780 1.22411 1.23022 1.11422 1.20648 0.86579 0.94819 1.52939 0.90853 1.18721 0.97396 0.80661 0.91101 0.92801 1.60157 1.12469 1.56764 1.06008 1.23238 0.88108 0.99353 0.87181 1.21994 0.99154 0.94888 1.01377 1.21070 0.95144 0.94508 0.91516 1.98351 1.61427 1.90518 1.52922 1.18615 1.01067 0.95167 0.96608 1.20944 0.99586 0.92010 0.98803 1.20823 0.98372 0.99866 0.95171 1.20875 0.97268 0.95575 0.98820 1.20849 0.99692 0.92598 0.97516 1.19087 0.93396 0.91797 0.93816 1.68071 1.21251 1.01453 1.24696 0.92755 0.84571 0.88371 0.83764 0.85413 0.85772 0.85452 0.84374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 2 C 0.08 2.43 5.47 -17.82 -0.10 2.34 16 3 Si 0.86 21.15 26.94 -169.99 -4.58 16.58 16 4 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 5 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.19 -4.31 5.17 56.52 0.29 -4.02 16 7 C -0.51 -14.15 9.09 -34.44 -0.31 -14.47 16 8 H 0.07 2.29 7.91 -52.48 -0.42 1.87 16 9 C 0.23 5.14 2.41 -70.02 -0.17 4.97 16 10 H 0.05 1.17 7.26 -51.93 -0.38 0.79 16 11 N -0.83 -16.76 5.82 -6.65 -0.04 -16.80 16 12 C 0.18 3.56 5.69 -82.53 -0.47 3.09 16 13 C -0.15 -2.63 9.43 -39.75 -0.37 -3.00 16 14 C 0.01 0.19 6.37 -39.11 -0.25 -0.06 16 15 Cl -0.06 -0.79 27.66 -51.86 -1.43 -2.23 16 16 C -0.11 -1.80 5.74 -106.77 -0.61 -2.41 16 17 C -0.09 -1.24 9.46 -39.53 -0.37 -1.62 16 18 C -0.12 -1.42 9.96 -39.92 -0.40 -1.81 16 19 C -0.11 -1.25 9.94 -39.95 -0.40 -1.65 16 20 C -0.09 -1.32 9.98 -39.47 -0.39 -1.71 16 21 C 0.14 2.53 6.60 -84.86 -0.56 1.97 16 22 N -0.45 -9.18 9.81 -7.24 -0.07 -9.25 16 23 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 24 H 0.34 7.04 8.90 -39.29 -0.35 6.69 16 25 H 0.31 5.27 9.06 -39.29 -0.36 4.92 16 26 H 0.14 2.18 7.92 -52.49 -0.42 1.76 16 27 H 0.13 1.45 7.07 -52.49 -0.37 1.07 16 28 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 274.33 15.07 4.13 4.13 Total: -1.00 -31.35 274.33 -8.42 -39.77 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -2.80 Total: 9.07 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -4.41 Total: -14.36 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: 0.66 Total: -52.95 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.58 Total: 16.58 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.43 Total: -2.23 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.35 -8.42 -39.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713726779.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.431 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds