Wall clock time and date at job start Mon Mar 30 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86808 * 120.00003 * 2 1 4 4 H 1.48501 * 109.46882 * 269.99956 * 3 2 1 5 5 H 1.48499 * 109.46811 * 29.99800 * 3 2 1 6 6 H 1.48502 * 109.47220 * 150.00184 * 3 2 1 7 7 C 1.37875 * 120.00266 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00197 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00546 * 180.02562 * 7 2 1 10 10 H 1.09004 * 109.46496 * 300.00158 * 9 7 2 11 11 N 1.46895 * 109.46824 * 59.99964 * 9 7 2 12 12 C 1.50697 * 109.47291 * 180.02562 * 9 7 2 13 13 C 1.39232 * 119.11132 * 125.01910 * 12 9 7 14 14 C 1.36755 * 119.91897 * 179.97438 * 13 12 9 15 15 Cl 1.73591 * 120.93984 * 179.97438 * 14 13 12 16 16 C 1.40913 * 118.12356 * 359.73428 * 14 13 12 17 17 C 1.40378 * 121.37999 * 179.69296 * 16 14 13 18 18 C 1.36156 * 119.61427 * 180.30679 * 17 16 14 19 19 C 1.39342 * 120.86327 * 0.27637 * 18 17 16 20 20 C 1.36082 * 121.05760 * 359.97438 * 19 18 17 21 21 C 1.40579 * 119.75031 * 0.02562 * 20 19 18 22 22 N 1.31116 * 119.11516 * 304.99958 * 12 9 7 23 23 H 0.96999 * 120.00203 * 0.02562 * 1 2 3 24 24 H 1.00900 * 111.00379 * 60.00335 * 11 9 7 25 25 H 1.00902 * 110.99722 * 183.95818 * 11 9 7 26 26 H 1.07995 * 120.04482 * 0.02562 * 13 12 9 27 27 H 1.08002 * 120.19488 * 0.58723 * 17 16 14 28 28 H 1.08007 * 119.57234 * 180.25573 * 18 17 16 29 29 H 1.07997 * 119.46981 * 179.97438 * 19 18 17 30 30 H 1.08002 * 120.12802 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8751 -0.6804 -0.8889 11 7 4.0007 -0.5013 1.2006 12 6 4.0138 -2.6149 0.0010 13 6 4.8981 -3.0206 -0.9950 14 6 5.3648 -4.3060 -1.0106 15 17 6.4675 -4.8403 -2.2402 16 6 4.9292 -5.1831 0.0027 17 6 5.3600 -6.5184 0.0485 18 6 4.9114 -7.3363 1.0403 19 6 4.0253 -6.8671 2.0079 20 6 3.5837 -5.5801 1.9903 21 6 4.0243 -4.7051 0.9821 22 7 3.6067 -3.4356 0.9390 23 1 -0.4850 0.8400 -0.0004 24 1 3.6769 -0.9587 2.0397 25 1 5.0072 -0.4312 1.1924 26 1 5.2159 -2.3210 -1.7538 27 1 6.0467 -6.8935 -0.6958 28 1 5.2465 -8.3625 1.0773 29 1 3.6836 -7.5356 2.7843 30 1 2.8972 -5.2321 2.7480 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713726779.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:30 Heat of formation + Delta-G solvation = 32.763066 kcal Electronic energy + Delta-G solvation = -16730.732682 eV Core-core repulsion = 13936.834310 eV Total energy + Delta-G solvation = -2793.898372 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 262.057 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.90121 -38.66407 -37.94676 -36.01202 -34.13079 -33.82975 -31.40007 -30.82257 -28.39547 -25.78207 -24.69738 -23.11738 -22.24231 -19.37626 -18.74789 -18.35600 -17.62931 -16.43089 -16.17156 -15.72900 -15.64074 -15.54967 -15.06376 -14.94448 -14.37581 -14.26412 -13.73093 -13.45868 -12.97908 -12.69163 -12.65859 -12.53521 -12.25537 -11.97510 -11.83651 -11.38799 -11.10609 -10.72459 -10.48693 -9.77688 -9.24825 -8.92554 -8.19587 -6.32712 -0.70436 -0.24055 0.75821 0.87270 1.55066 1.62147 1.92069 1.98884 2.64527 3.01456 3.18708 3.29985 3.53250 3.63242 3.84092 4.11880 4.17466 4.23046 4.37627 4.44760 4.46318 4.68921 4.96241 5.00235 5.12540 5.35150 5.40280 5.44210 5.52603 5.87172 6.16596 6.42587 6.78341 6.93227 7.08933 7.42796 8.94342 Molecular weight = 262.06amu Principal moments of inertia in cm(-1) A = 0.024128 B = 0.006410 C = 0.005462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.211866 B = 4367.440569 C = 5124.648336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.022 3.978 3 Si 0.933 3.067 4 H -0.295 1.295 5 H -0.317 1.317 6 H -0.155 1.155 7 C -0.507 4.507 8 H 0.019 0.981 9 C 0.238 3.762 10 H 0.066 0.934 11 N -0.825 5.825 12 C 0.151 3.849 13 C -0.166 4.166 14 C 0.016 3.984 15 Cl -0.031 7.031 16 C -0.122 4.122 17 C -0.102 4.102 18 C -0.108 4.108 19 C -0.084 4.084 20 C -0.117 4.117 21 C 0.111 3.889 22 N -0.482 5.482 23 H 0.262 0.738 24 H 0.338 0.662 25 H 0.330 0.670 26 H 0.161 0.839 27 H 0.150 0.850 28 H 0.169 0.831 29 H 0.166 0.834 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.366 -13.870 0.569 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.175 4.175 3 Si 0.758 3.242 4 H -0.222 1.222 5 H -0.245 1.245 6 H -0.075 1.075 7 C -0.546 4.546 8 H 0.038 0.962 9 C 0.127 3.873 10 H 0.083 0.917 11 N -0.354 5.354 12 C -0.004 4.004 13 C -0.187 4.187 14 C -0.019 4.019 15 Cl -0.001 7.001 16 C -0.125 4.125 17 C -0.120 4.120 18 C -0.126 4.126 19 C -0.103 4.103 20 C -0.136 4.136 21 C -0.011 4.011 22 N -0.191 5.191 23 H 0.070 0.930 24 H 0.151 0.849 25 H 0.142 0.858 26 H 0.179 0.821 27 H 0.167 0.833 28 H 0.187 0.813 29 H 0.184 0.816 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 15.346 -13.003 0.911 20.134 hybrid contribution 0.364 -0.261 -0.744 0.869 sum 15.710 -13.264 0.167 20.561 Atomic orbital electron populations 1.70114 1.09061 1.28069 1.52162 1.25948 0.95192 1.04072 0.92331 0.86250 0.84470 0.75609 0.77886 1.22234 1.24500 1.07541 1.20829 0.89809 0.92475 1.51489 0.96221 1.18397 0.93789 0.83056 0.92026 0.91670 1.59840 1.14268 1.56235 1.05066 1.22822 0.90113 0.98481 0.88947 1.21967 0.99386 0.96140 1.01238 1.21131 0.94862 0.94015 0.91861 1.98355 1.60146 1.90128 1.51512 1.18865 1.00784 0.96702 0.96175 1.21260 1.00001 0.90763 1.00023 1.21371 0.96361 1.01514 0.93306 1.21350 0.95456 0.94397 0.99142 1.21014 1.01036 0.93983 0.97561 1.19469 0.94771 0.91324 0.95572 1.67916 1.22372 1.03136 1.25693 0.92969 0.84903 0.85764 0.82105 0.83286 0.81322 0.81636 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.86 13.96 21.45 0.30 -61.56 16 2 C 0.02 1.33 5.47 84.65 0.46 1.80 16 3 Si 0.93 44.49 26.94 68.60 1.85 46.34 16 4 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 5 H -0.32 -15.73 7.11 99.48 0.71 -15.02 16 6 H -0.16 -6.43 5.17 99.48 0.51 -5.91 16 7 C -0.51 -29.38 9.09 25.60 0.23 -29.15 16 8 H 0.02 1.31 7.91 -2.91 -0.02 1.29 16 9 C 0.24 10.69 2.41 43.42 0.10 10.80 16 10 H 0.07 2.78 7.26 -2.38 -0.02 2.76 16 11 N -0.82 -32.82 5.82 -174.96 -1.02 -33.84 16 12 C 0.15 6.23 5.69 42.90 0.24 6.48 16 13 C -0.17 -5.66 9.43 22.16 0.21 -5.45 16 14 C 0.02 0.49 6.37 22.58 0.14 0.64 16 15 Cl -0.03 -0.72 27.66 -2.72 -0.08 -0.79 16 16 C -0.12 -3.79 5.74 -21.26 -0.12 -3.91 16 17 C -0.10 -2.33 9.46 22.31 0.21 -2.12 16 18 C -0.11 -1.95 9.96 22.05 0.22 -1.73 16 19 C -0.08 -1.71 9.94 22.03 0.22 -1.49 16 20 C -0.12 -3.46 9.98 22.34 0.22 -3.23 16 21 C 0.11 3.99 6.60 40.27 0.27 4.26 16 22 N -0.48 -20.59 9.81 -176.83 -1.73 -22.32 16 23 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 24 H 0.34 14.05 8.90 -89.69 -0.80 13.25 16 25 H 0.33 10.74 9.06 -89.69 -0.81 9.93 16 26 H 0.16 4.69 7.92 -2.91 -0.02 4.67 16 27 H 0.15 2.73 7.07 -2.91 -0.02 2.71 16 28 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 29 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 30 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -73.09 274.33 1.13 -71.97 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: -0.61 Total: 23.32 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 2.41 Total: -23.11 kcal Atomic # 7 Polarization: -115.27 SS G_CDS: -2.45 Total: -117.72 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.85 Total: 46.34 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.08 Total: -0.79 kcal Total: -73.09 1.13 -71.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713726779.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.730 kcal (2) G-P(sol) polarization free energy of solvation -73.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds