Wall clock time and date at job start Mon Mar 30 2020 06:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00187 * 2 1 4 4 H 1.48499 * 109.47454 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47004 * 300.00019 * 3 2 1 6 6 H 1.48497 * 109.47133 * 59.99584 * 3 2 1 7 7 C 1.38808 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00090 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99640 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99735 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47103 * 180.02562 * 10 9 7 12 12 O 1.20825 * 119.99571 * 359.97438 * 11 10 9 13 13 O 1.34233 * 119.99878 * 180.02562 * 11 10 9 14 14 C 1.45194 * 116.99844 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47239 * 29.99589 * 14 13 11 16 16 C 1.52999 * 109.46968 * 270.00109 * 14 13 11 17 17 C 1.53005 * 109.47159 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 14 19 19 C 1.53002 * 109.46817 * 300.00239 * 18 17 16 20 20 C 1.52997 * 109.47339 * 149.99832 * 14 13 11 21 21 H 1.09002 * 109.47153 * 59.99705 * 20 14 13 22 22 F 1.39904 * 109.46820 * 299.99724 * 20 14 13 23 23 H 0.96997 * 120.00303 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47396 * 60.00373 * 10 9 7 25 25 H 1.09006 * 109.46809 * 299.99908 * 10 9 7 26 26 H 1.09000 * 109.47486 * 59.99718 * 16 14 13 27 27 H 1.09002 * 109.46716 * 299.99800 * 16 14 13 28 28 H 1.09002 * 109.46935 * 299.99411 * 17 16 14 29 29 H 1.09001 * 109.46812 * 179.97438 * 17 16 14 30 30 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 31 31 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 32 32 H 1.08992 * 109.47063 * 299.99823 * 19 18 17 33 33 H 1.09004 * 109.46733 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9873 -5.3028 0.0036 12 8 0.7955 -5.5015 0.0038 13 8 2.8406 -6.3390 0.0049 14 6 2.2610 -7.6702 0.0060 15 1 1.3001 -7.6486 -0.5081 16 6 2.0569 -8.1363 1.4489 17 6 1.4467 -9.5394 1.4501 18 6 2.3891 -10.5061 0.7303 19 6 2.5931 -10.0399 -0.7126 20 6 3.2030 -8.6372 -0.7139 21 1 4.1639 -8.6589 -0.1998 22 9 3.3895 -8.2110 -2.0333 23 1 -0.4850 0.8400 -0.0004 24 1 3.1244 -3.7306 0.8928 25 1 3.1244 -3.7321 -0.8873 26 1 1.3858 -7.4474 1.9619 27 1 3.0178 -8.1580 1.9630 28 1 0.4858 -9.5182 0.9359 29 1 1.3017 -9.8716 2.4781 30 1 1.9546 -11.5057 0.7316 31 1 3.3499 -10.5273 1.2446 32 1 1.6324 -10.0187 -1.2268 33 1 3.2649 -10.7284 -1.2252 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810894321.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:38 Heat of formation + Delta-G solvation = -179.788591 kcal Electronic energy + Delta-G solvation = -17511.485147 eV Core-core repulsion = 14383.184668 eV Total energy + Delta-G solvation = -3128.300478 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 262.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.76244 -41.69678 -38.96255 -37.14835 -34.62887 -32.02244 -31.36909 -30.32338 -27.72741 -24.34384 -23.57051 -22.19486 -21.23053 -19.91358 -18.86435 -17.91471 -17.47029 -17.06736 -16.91242 -16.43406 -16.04236 -15.94178 -15.28228 -14.77520 -14.57006 -14.54280 -14.27367 -13.90301 -13.64839 -13.20476 -13.08129 -12.92411 -12.67540 -12.34209 -12.28735 -11.98249 -11.86174 -11.76679 -11.57869 -11.42653 -11.18942 -11.10581 -10.40841 -8.76291 -8.39139 -6.19412 0.95353 1.05758 1.39837 1.41667 1.55551 1.79563 2.22313 2.96121 3.13495 3.26080 3.39698 3.56445 3.70693 3.73891 4.02658 4.03656 4.12773 4.19609 4.25093 4.39141 4.45470 4.62970 4.76851 4.87662 5.01728 5.06392 5.16355 5.19721 5.23972 5.39844 5.41385 6.16839 6.60790 7.02626 8.70526 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.048086 B = 0.003939 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.154421 B = 7106.912977 C = 7361.242236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.017 3.983 3 Si 1.002 2.998 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.086 0.914 9 S -0.136 6.136 10 C -0.109 4.109 11 C 0.488 3.512 12 O -0.518 6.518 13 O -0.347 6.347 14 C 0.052 3.948 15 H 0.073 0.927 16 C -0.131 4.131 17 C -0.117 4.117 18 C -0.113 4.113 19 C -0.138 4.138 20 C 0.096 3.904 21 H 0.114 0.886 22 F -0.226 7.226 23 H 0.273 0.727 24 H 0.124 0.876 25 H 0.119 0.881 26 H 0.055 0.945 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.662 -20.798 2.438 22.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.188 4.188 3 Si 0.823 3.177 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.197 1.197 7 C -0.697 4.697 8 H 0.104 0.896 9 S 0.091 5.909 10 C -0.257 4.257 11 C 0.331 3.669 12 O -0.406 6.406 13 O -0.265 6.265 14 C -0.003 4.003 15 H 0.091 0.909 16 C -0.169 4.169 17 C -0.155 4.155 18 C -0.150 4.150 19 C -0.176 4.176 20 C 0.060 3.940 21 H 0.132 0.868 22 F -0.207 7.207 23 H 0.082 0.918 24 H 0.142 0.858 25 H 0.137 0.863 26 H 0.074 0.926 27 H 0.112 0.888 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.034 -21.002 2.403 22.278 hybrid contribution 1.158 1.513 -0.260 1.923 sum 8.192 -19.489 2.143 21.249 Atomic orbital electron populations 1.70164 1.07959 1.28793 1.47699 1.26129 0.95988 1.03289 0.93438 0.84866 0.78584 0.76087 0.78172 1.18063 1.19859 1.19741 1.23233 0.95527 0.91521 1.59398 0.89611 1.85516 1.09154 0.99091 1.97171 1.23102 1.04363 0.90016 1.08222 1.23037 0.84898 0.87537 0.71477 1.90644 1.18184 1.85934 1.45821 1.86533 1.40389 1.15632 1.83904 1.23702 0.98046 0.78610 0.99931 0.90903 1.21942 1.03246 0.98797 0.92901 1.21578 0.98977 0.92149 1.02776 1.21548 1.00943 0.99626 0.92885 1.22167 1.02567 0.92661 1.00216 1.22007 1.00872 0.93824 0.77321 0.86783 1.92811 1.96723 1.91780 1.39402 0.91792 0.85804 0.86324 0.92621 0.88813 0.92140 0.88956 0.88641 0.89609 0.91033 0.87827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.22 13.22 21.65 0.29 -54.93 16 2 C 0.02 0.94 5.49 84.86 0.47 1.41 16 3 Si 1.00 43.27 29.55 68.60 2.03 45.30 16 4 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.55 -31.22 9.50 67.96 0.65 -30.57 16 8 H 0.09 4.55 7.80 -2.91 -0.02 4.53 16 9 S -0.14 -7.53 20.58 -56.49 -1.16 -8.69 16 10 C -0.11 -4.53 6.27 71.24 0.45 -4.08 16 11 C 0.49 19.51 7.95 71.24 0.57 20.07 16 12 O -0.52 -23.81 15.08 21.97 0.33 -23.48 16 13 O -0.35 -11.43 9.83 -51.45 -0.51 -11.93 16 14 C 0.05 1.39 2.20 30.59 0.07 1.46 16 15 H 0.07 2.26 7.16 -2.39 -0.02 2.25 16 16 C -0.13 -2.72 5.56 30.60 0.17 -2.55 16 17 C -0.12 -1.67 5.92 30.60 0.18 -1.49 16 18 C -0.11 -1.10 5.92 30.59 0.18 -0.92 16 19 C -0.14 -1.88 5.66 30.58 0.17 -1.71 16 20 C 0.10 1.96 3.55 30.58 0.11 2.07 16 21 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 22 F -0.23 -6.24 17.03 44.97 0.77 -5.48 16 23 H 0.27 15.30 8.31 -92.71 -0.77 14.52 16 24 H 0.12 4.64 8.14 -2.40 -0.02 4.62 16 25 H 0.12 4.58 8.14 -2.39 -0.02 4.56 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -71.93 297.47 5.85 -66.09 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 1.10 Total: 9.43 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: 3.01 Total: -16.31 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.29 Total: -54.93 kcal Atomic # 8 Polarization: -35.24 SS G_CDS: -0.17 Total: -35.41 kcal Atomic # 9 Polarization: -6.24 SS G_CDS: 0.77 Total: -5.48 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -7.53 SS G_CDS: -1.16 Total: -8.69 kcal Total: -71.93 5.85 -66.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810894321.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.699 kcal (2) G-P(sol) polarization free energy of solvation -71.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds