Wall clock time and date at job start Mon Mar 30 2020 06:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00187 * 2 1 4 4 H 1.48500 * 109.47035 * 239.99733 * 3 2 1 5 5 H 1.48502 * 109.46957 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47443 * 119.99811 * 3 2 1 7 7 C 1.38808 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00090 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99640 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99735 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47103 * 180.02562 * 10 9 7 12 12 O 1.20825 * 119.99571 * 359.97438 * 11 10 9 13 13 O 1.34233 * 119.99878 * 180.02562 * 11 10 9 14 14 C 1.45194 * 116.99844 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47239 * 29.99589 * 14 13 11 16 16 C 1.52997 * 109.47339 * 149.99832 * 14 13 11 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47233 * 299.99657 * 17 16 14 19 19 C 1.52997 * 109.46817 * 60.00194 * 18 17 16 20 20 C 1.52999 * 109.46968 * 270.00109 * 14 13 11 21 21 H 1.09002 * 109.46716 * 299.99800 * 20 14 13 22 22 F 1.39895 * 109.47493 * 59.99577 * 20 14 13 23 23 H 0.96997 * 120.00303 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47396 * 60.00373 * 10 9 7 25 25 H 1.09006 * 109.46809 * 299.99908 * 10 9 7 26 26 H 1.09002 * 109.47153 * 59.99705 * 16 14 13 27 27 H 1.09001 * 109.46832 * 299.99896 * 16 14 13 28 28 H 1.08992 * 109.47399 * 59.99823 * 17 16 14 29 29 H 1.09004 * 109.46724 * 180.02562 * 17 16 14 30 30 H 1.08993 * 109.47662 * 180.02562 * 18 17 16 31 31 H 1.09002 * 109.47075 * 300.00932 * 18 17 16 32 32 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 33 33 H 1.09001 * 109.47289 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9873 -5.3028 0.0036 12 8 0.7955 -5.5015 0.0038 13 8 2.8406 -6.3390 0.0049 14 6 2.2610 -7.6702 0.0060 15 1 1.3001 -7.6486 -0.5081 16 6 3.2030 -8.6372 -0.7139 17 6 2.5918 -10.0399 -0.7133 18 6 2.3873 -10.5064 0.7294 19 6 1.4453 -9.5394 1.4494 20 6 2.0569 -8.1363 1.4489 21 1 3.0178 -8.1580 1.9630 22 9 1.1956 -7.2521 2.1073 23 1 -0.4850 0.8400 -0.0004 24 1 3.1244 -3.7306 0.8928 25 1 3.1244 -3.7321 -0.8873 26 1 4.1639 -8.6589 -0.1998 27 1 3.3483 -8.3051 -1.7419 28 1 1.6312 -10.0179 -1.2276 29 1 3.2632 -10.7289 -1.2258 30 1 1.9524 -11.5058 0.7300 31 1 3.3480 -10.5283 1.2439 32 1 0.4846 -9.5174 0.9350 33 1 1.2999 -9.8715 2.4774 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811055403.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:40 Heat of formation + Delta-G solvation = -159.234974 kcal Electronic energy + Delta-G solvation = -17658.661532 eV Core-core repulsion = 14531.252325 eV Total energy + Delta-G solvation = -3127.409207 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 262.083 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.56594 -40.12749 -37.98754 -35.75443 -32.45920 -30.94717 -30.33210 -29.01483 -25.53247 -23.10720 -22.91291 -20.78865 -20.40937 -17.90370 -17.30848 -16.62998 -16.17194 -15.75228 -15.37638 -14.82403 -14.70876 -14.41023 -14.05466 -13.76301 -13.55721 -12.88121 -12.74063 -12.63008 -12.43268 -11.96226 -11.51136 -11.36780 -11.10637 -11.07723 -11.04294 -11.00805 -10.79111 -10.71527 -10.03058 -9.88983 -9.87737 -9.08158 -8.32217 -6.56553 -6.24318 -3.96696 2.61494 2.73609 3.23657 3.24733 3.28855 3.51800 4.15780 4.17993 4.28183 4.38585 4.58134 4.72853 4.78954 4.92565 4.96166 5.11198 5.15285 5.21147 5.41885 5.47063 5.54614 5.68513 5.70554 5.76473 5.81387 5.85189 5.86642 6.03123 6.11226 6.73652 7.57551 8.23022 8.32797 9.20765 10.83154 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.053608 B = 0.004044 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.184924 B = 6922.176873 C = 7124.519689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.921 3.079 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.075 0.925 9 S -0.057 6.057 10 C -0.127 4.127 11 C 0.476 3.524 12 O -0.476 6.476 13 O -0.355 6.355 14 C 0.062 3.938 15 H 0.095 0.905 16 C -0.114 4.114 17 C -0.120 4.120 18 C -0.119 4.119 19 C -0.144 4.144 20 C 0.076 3.924 21 H 0.089 0.911 22 F -0.200 7.200 23 H 0.270 0.730 24 H 0.102 0.898 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.343 -20.014 0.134 21.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.685 4.685 8 H 0.093 0.907 9 S 0.170 5.830 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.361 6.361 13 O -0.273 6.273 14 C 0.006 3.994 15 H 0.113 0.887 16 C -0.151 4.151 17 C -0.158 4.158 18 C -0.157 4.157 19 C -0.182 4.182 20 C 0.040 3.960 21 H 0.107 0.893 22 F -0.180 7.180 23 H 0.080 0.920 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.652 -20.169 0.153 20.946 hybrid contribution 1.749 1.313 0.099 2.189 sum 7.401 -18.856 0.251 20.258 Atomic orbital electron populations 1.70000 1.05991 1.27717 1.46543 1.24996 0.95049 0.99068 0.94350 0.86182 0.79209 0.80985 0.78893 1.19855 1.20779 1.19839 1.22816 0.95003 0.91263 1.59455 0.90666 1.85434 1.04309 0.96410 1.96861 1.23284 1.06949 0.90925 1.06318 1.23317 0.85399 0.87099 0.72476 1.90666 1.16728 1.85262 1.43397 1.86581 1.41123 1.14737 1.84864 1.23264 0.99546 0.80605 0.95952 0.88707 1.21580 0.98776 0.93307 1.01466 1.21571 1.01782 0.95366 0.97031 1.21536 0.99813 0.98761 0.95595 1.22141 1.00303 0.93137 1.02593 1.22031 0.93179 0.88409 0.92392 0.89350 1.92912 1.72372 1.70486 1.82239 0.92028 0.88019 0.88042 0.90381 0.90141 0.91230 0.90599 0.90842 0.91280 0.90289 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 2 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -15.35 9.50 30.94 0.29 -15.06 16 8 H 0.08 2.03 7.80 -52.49 -0.41 1.62 16 9 S -0.06 -1.55 20.58 -107.50 -2.21 -3.76 16 10 C -0.13 -2.70 6.27 36.01 0.23 -2.47 16 11 C 0.48 9.66 7.48 36.01 0.27 9.92 16 12 O -0.48 -10.98 14.28 -18.75 -0.27 -11.25 16 13 O -0.35 -5.90 9.87 -39.27 -0.39 -6.28 16 14 C 0.06 0.83 2.32 -26.73 -0.06 0.77 16 15 H 0.09 1.41 7.16 -51.93 -0.37 1.04 16 16 C -0.11 -1.05 5.58 -26.73 -0.15 -1.20 16 17 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 18 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 19 C -0.14 -1.32 5.66 -26.70 -0.15 -1.47 16 20 C 0.08 0.96 3.56 -26.70 -0.09 0.87 16 21 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 22 F -0.20 -3.47 15.73 2.25 0.04 -3.44 16 23 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 24 H 0.10 2.02 8.14 -51.92 -0.42 1.60 16 25 H 0.10 1.97 8.14 -51.91 -0.42 1.55 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 295.09 15.07 4.45 4.45 Total: -1.00 -33.41 295.09 -7.32 -40.73 By element: Atomic # 1 Polarization: 1.70 SS G_CDS: -4.57 Total: -2.87 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -0.08 Total: -8.55 kcal Atomic # 7 Polarization: -26.13 SS G_CDS: 0.73 Total: -25.40 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -0.66 Total: -17.54 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.04 Total: -3.44 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -33.41 -7.32 -40.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811055403.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.502 kcal (2) G-P(sol) polarization free energy of solvation -33.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds