Wall clock time and date at job start Mon Mar 30 2020 06:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00187 * 2 1 4 4 H 1.48500 * 109.47035 * 239.99733 * 3 2 1 5 5 H 1.48502 * 109.46957 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47443 * 119.99811 * 3 2 1 7 7 C 1.38808 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00090 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99640 * 359.97438 * 7 2 1 10 10 C 1.81001 * 99.99735 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.47103 * 180.02562 * 10 9 7 12 12 O 1.20825 * 119.99571 * 359.97438 * 11 10 9 13 13 O 1.34233 * 119.99878 * 180.02562 * 11 10 9 14 14 C 1.45194 * 116.99844 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.47239 * 29.99589 * 14 13 11 16 16 C 1.52997 * 109.47339 * 149.99832 * 14 13 11 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47233 * 299.99657 * 17 16 14 19 19 C 1.52997 * 109.46817 * 60.00194 * 18 17 16 20 20 C 1.52999 * 109.46968 * 270.00109 * 14 13 11 21 21 H 1.09002 * 109.46716 * 299.99800 * 20 14 13 22 22 F 1.39895 * 109.47493 * 59.99577 * 20 14 13 23 23 H 0.96997 * 120.00303 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47396 * 60.00373 * 10 9 7 25 25 H 1.09006 * 109.46809 * 299.99908 * 10 9 7 26 26 H 1.09002 * 109.47153 * 59.99705 * 16 14 13 27 27 H 1.09001 * 109.46832 * 299.99896 * 16 14 13 28 28 H 1.08992 * 109.47399 * 59.99823 * 17 16 14 29 29 H 1.09004 * 109.46724 * 180.02562 * 17 16 14 30 30 H 1.08993 * 109.47662 * 180.02562 * 18 17 16 31 31 H 1.09002 * 109.47075 * 300.00932 * 18 17 16 32 32 H 1.09002 * 109.47153 * 60.00231 * 19 18 17 33 33 H 1.09001 * 109.47289 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0019 10 6 2.5158 -3.8914 0.0029 11 6 1.9873 -5.3028 0.0036 12 8 0.7955 -5.5015 0.0038 13 8 2.8406 -6.3390 0.0049 14 6 2.2610 -7.6702 0.0060 15 1 1.3001 -7.6486 -0.5081 16 6 3.2030 -8.6372 -0.7139 17 6 2.5918 -10.0399 -0.7133 18 6 2.3873 -10.5064 0.7294 19 6 1.4453 -9.5394 1.4494 20 6 2.0569 -8.1363 1.4489 21 1 3.0178 -8.1580 1.9630 22 9 1.1956 -7.2521 2.1073 23 1 -0.4850 0.8400 -0.0004 24 1 3.1244 -3.7306 0.8928 25 1 3.1244 -3.7321 -0.8873 26 1 4.1639 -8.6589 -0.1998 27 1 3.3483 -8.3051 -1.7419 28 1 1.6312 -10.0179 -1.2276 29 1 3.2632 -10.7289 -1.2258 30 1 1.9524 -11.5058 0.7300 31 1 3.3480 -10.5283 1.2439 32 1 0.4846 -9.5174 0.9350 33 1 1.2999 -9.8715 2.4774 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811055403.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:40 Heat of formation + Delta-G solvation = -179.104300 kcal Electronic energy + Delta-G solvation = -17659.523130 eV Core-core repulsion = 14531.252325 eV Total energy + Delta-G solvation = -3128.270805 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 262.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.76997 -41.58265 -38.97610 -37.10423 -34.62251 -32.01770 -31.35468 -30.27753 -27.71877 -24.11846 -23.73404 -22.18874 -21.19457 -19.88916 -18.82083 -17.88763 -17.49201 -17.02776 -16.90105 -16.46282 -16.01805 -15.98577 -15.18852 -14.69848 -14.51983 -14.48121 -14.19304 -13.91526 -13.49344 -13.27099 -13.19187 -12.87534 -12.69258 -12.30335 -12.25940 -12.02217 -11.84597 -11.76831 -11.59782 -11.38931 -11.15417 -11.00803 -10.39949 -8.75634 -8.37948 -6.18659 0.98346 1.12011 1.39945 1.44672 1.53596 1.82378 2.23532 2.96862 3.17859 3.26854 3.45023 3.54880 3.70799 3.75929 4.04018 4.05639 4.13866 4.23894 4.29236 4.39178 4.47353 4.65041 4.78372 4.89490 5.05183 5.07893 5.17087 5.22147 5.29632 5.39457 5.44604 6.16896 6.66640 7.03069 8.71287 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.053608 B = 0.004044 C = 0.003929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.184924 B = 6922.176873 C = 7124.519689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.016 3.984 3 Si 1.002 2.998 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.551 4.551 8 H 0.086 0.914 9 S -0.139 6.139 10 C -0.107 4.107 11 C 0.483 3.517 12 O -0.512 6.512 13 O -0.346 6.346 14 C 0.054 3.946 15 H 0.073 0.927 16 C -0.107 4.107 17 C -0.117 4.117 18 C -0.114 4.114 19 C -0.139 4.139 20 C 0.063 3.937 21 H 0.108 0.892 22 F -0.232 7.232 23 H 0.273 0.727 24 H 0.118 0.882 25 H 0.123 0.877 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.830 -21.181 0.017 23.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.823 3.177 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.698 4.698 8 H 0.105 0.895 9 S 0.088 5.912 10 C -0.255 4.255 11 C 0.325 3.675 12 O -0.399 6.399 13 O -0.264 6.264 14 C -0.002 4.002 15 H 0.091 0.909 16 C -0.145 4.145 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.177 4.177 20 C 0.027 3.973 21 H 0.126 0.874 22 F -0.213 7.213 23 H 0.082 0.918 24 H 0.136 0.864 25 H 0.141 0.859 26 H 0.112 0.888 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.121 0.879 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.162 -21.370 0.033 22.876 hybrid contribution 1.005 1.519 0.137 1.826 sum 9.167 -19.851 0.170 21.866 Atomic orbital electron populations 1.70162 1.08014 1.28909 1.47587 1.26147 0.95984 1.03335 0.93415 0.84961 0.77786 0.75390 0.79602 1.18493 1.20272 1.18628 1.23176 0.95539 0.91531 1.59595 0.89547 1.85575 1.09314 0.99132 1.97170 1.23081 1.04243 0.90079 1.08116 1.23049 0.85031 0.87620 0.71796 1.90659 1.18241 1.85836 1.45160 1.86538 1.40202 1.15563 1.84067 1.23734 0.99859 0.79429 0.97146 0.90856 1.21671 0.98474 0.93317 1.01019 1.21611 1.02005 0.94151 0.97645 1.21561 0.99916 0.98714 0.94920 1.22155 1.00310 0.91563 1.03638 1.22480 0.93801 0.89494 0.91524 0.87443 1.92847 1.73581 1.71952 1.82915 0.91804 0.86359 0.85863 0.88806 0.90003 0.91789 0.87935 0.88827 0.89773 0.91427 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.92 13.22 21.65 0.29 -55.63 16 2 C 0.02 0.93 5.49 84.86 0.47 1.39 16 3 Si 1.00 43.51 29.55 68.60 2.03 45.53 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.55 -31.63 9.50 67.96 0.65 -30.98 16 8 H 0.09 4.59 7.80 -2.91 -0.02 4.57 16 9 S -0.14 -7.82 20.58 -56.49 -1.16 -8.98 16 10 C -0.11 -4.53 6.27 71.24 0.45 -4.08 16 11 C 0.48 19.77 7.48 71.24 0.53 20.30 16 12 O -0.51 -24.47 14.28 21.97 0.31 -24.16 16 13 O -0.35 -11.28 9.87 -51.45 -0.51 -11.79 16 14 C 0.05 1.40 2.32 30.59 0.07 1.47 16 15 H 0.07 2.24 7.16 -2.39 -0.02 2.22 16 16 C -0.11 -1.73 5.58 30.59 0.17 -1.56 16 17 C -0.12 -1.27 5.92 30.60 0.18 -1.09 16 18 C -0.11 -1.14 5.92 30.59 0.18 -0.95 16 19 C -0.14 -2.34 5.66 30.61 0.17 -2.17 16 20 C 0.06 1.54 3.56 30.61 0.11 1.65 16 21 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 22 F -0.23 -8.27 15.73 44.97 0.71 -7.56 16 23 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 24 H 0.12 4.61 8.14 -2.40 -0.02 4.60 16 25 H 0.12 4.67 8.14 -2.39 -0.02 4.65 16 26 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.10 0.66 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.27 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -74.71 295.09 5.74 -68.97 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.10 Total: 9.62 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 2.98 Total: -16.01 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: 0.29 Total: -55.63 kcal Atomic # 8 Polarization: -35.75 SS G_CDS: -0.19 Total: -35.94 kcal Atomic # 9 Polarization: -8.27 SS G_CDS: 0.71 Total: -7.56 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -7.82 SS G_CDS: -1.16 Total: -8.98 kcal Total: -74.71 5.74 -68.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811055403.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.134 kcal (2) G-P(sol) polarization free energy of solvation -74.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds