Wall clock time and date at job start Mon Mar 30 2020 06:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 11 11 O 1.42896 * 109.47156 * 59.72527 * 9 7 2 12 12 C 1.50696 * 109.47259 * 179.72713 * 9 7 2 13 13 C 1.34719 * 125.66630 * 99.71721 * 12 9 7 14 14 C 1.40947 * 107.03538 * 179.85008 * 13 12 9 15 15 C 1.35953 * 106.73667 * 0.40614 * 14 13 12 16 16 C 1.47791 * 125.92926 * 179.76952 * 15 14 13 17 17 C 1.39594 * 120.12066 * 359.72912 * 16 15 14 18 18 C 1.37930 * 119.87439 * 179.74650 * 17 16 15 19 19 C 1.38580 * 120.11942 * 0.52575 * 18 17 16 20 20 F 1.35102 * 119.87612 * 179.70395 * 19 18 17 21 21 C 1.38572 * 120.24420 * 359.72647 * 19 18 17 22 22 C 1.37917 * 120.12666 * 0.02562 * 21 19 18 23 23 O 1.34320 * 125.66412 * 280.02074 * 12 9 7 24 24 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 25 25 H 0.96701 * 114.00155 * 59.99751 * 11 9 7 26 26 H 1.08007 * 126.48197 * 359.97438 * 13 12 9 27 27 H 1.08001 * 126.63316 * 180.11756 * 14 13 12 28 28 H 1.07997 * 120.06426 * 359.97429 * 17 16 15 29 29 H 1.07998 * 119.93506 * 180.25304 * 18 17 16 30 30 H 1.08002 * 119.93510 * 179.97438 * 21 19 18 31 31 H 1.07998 * 120.06699 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.6283 -2.5592 0.8921 11 8 0.4241 -2.5719 -1.1637 12 6 2.2302 -3.6446 -0.0079 13 6 2.6051 -4.3645 1.0673 14 6 3.5261 -5.3314 0.6162 15 6 3.6706 -5.1401 -0.7220 16 6 4.5447 -5.9229 -1.6205 17 6 5.3224 -6.9635 -1.1096 18 6 6.1324 -7.6942 -1.9537 19 6 6.1834 -7.3897 -3.3047 20 9 6.9831 -8.1048 -4.1259 21 6 5.4176 -6.3544 -3.8162 22 6 4.6002 -5.6205 -2.9823 23 8 2.8785 -4.1137 -1.0867 24 1 -0.4851 0.8401 0.0004 25 1 0.9124 -2.5243 -1.9970 26 1 2.2629 -4.2280 2.0826 27 1 4.0246 -6.0768 1.2181 28 1 5.2870 -7.1985 -0.0561 29 1 6.7313 -8.5021 -1.5601 30 1 5.4615 -6.1211 -4.8698 31 1 4.0034 -4.8140 -3.3821 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535701781.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:36 Heat of formation + Delta-G solvation = -62.358871 kcal Electronic energy + Delta-G solvation = -18362.081319 eV Core-core repulsion = 15103.429024 eV Total energy + Delta-G solvation = -3258.652295 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.079 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.99569 -41.98353 -38.86364 -35.72982 -32.74672 -32.29619 -31.70054 -31.21940 -28.76193 -26.18896 -23.54969 -23.28855 -21.87454 -20.84659 -19.71249 -17.94334 -17.26108 -17.04350 -16.18977 -15.71162 -15.55793 -15.31269 -14.73252 -14.39398 -13.76439 -13.59099 -13.45121 -13.23480 -12.96792 -12.53182 -12.40096 -12.15595 -11.71951 -11.43509 -11.13340 -11.07833 -10.97054 -10.32779 -9.65297 -9.60495 -9.27251 -9.09748 -8.74718 -8.55009 -7.33776 -6.17270 -4.38595 0.70948 1.11641 2.41579 3.13393 3.23006 3.27883 3.31120 3.35525 3.70140 4.13299 4.28728 4.60540 4.72049 4.84150 5.08902 5.11927 5.24706 5.43849 5.64165 5.74022 5.82132 5.96771 6.03839 6.09574 6.18209 6.36443 6.47685 6.64642 6.75481 7.02942 7.20272 7.65182 7.80951 7.90143 8.62302 9.11901 9.37069 10.85520 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.030857 B = 0.004314 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.193481 B = 6488.295026 C = 6805.209760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.083 3.917 3 Si 0.899 3.101 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.573 4.573 8 H 0.061 0.939 9 C 0.298 3.702 10 H 0.092 0.908 11 O -0.556 6.556 12 C 0.043 3.957 13 C -0.246 4.246 14 C -0.171 4.171 15 C -0.026 4.026 16 C 0.002 3.998 17 C -0.082 4.082 18 C -0.147 4.147 19 C 0.086 3.914 20 F -0.143 7.143 21 C -0.146 4.146 22 C -0.082 4.082 23 O -0.164 6.164 24 H 0.266 0.734 25 H 0.355 0.645 26 H 0.146 0.854 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.677 -12.432 -3.149 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.125 4.125 3 Si 0.725 3.275 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.610 4.610 8 H 0.079 0.921 9 C 0.240 3.760 10 H 0.110 0.890 11 O -0.359 6.359 12 C -0.009 4.009 13 C -0.265 4.265 14 C -0.190 4.190 15 C -0.075 4.075 16 C 0.001 3.999 17 C -0.100 4.100 18 C -0.166 4.166 19 C 0.067 3.933 20 F -0.121 7.121 21 C -0.165 4.165 22 C -0.100 4.100 23 O -0.060 6.060 24 H 0.076 0.924 25 H 0.199 0.801 26 H 0.164 0.836 27 H 0.160 0.840 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.155 0.845 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.025 -12.294 -3.019 15.547 hybrid contribution 1.186 0.757 -0.212 1.423 sum 10.211 -11.536 -3.231 15.742 Atomic orbital electron populations 1.70047 1.05968 1.27229 1.45917 1.25014 0.94807 0.99306 0.93348 0.86563 0.79632 0.82297 0.78976 1.19925 1.20942 1.19903 1.21444 0.93447 0.90099 1.56059 0.92113 1.18456 0.84532 0.85103 0.87873 0.89019 1.86575 1.37838 1.95878 1.15594 1.25102 0.95382 0.96929 0.83518 1.21421 1.04827 1.00028 1.00233 1.21669 1.01998 1.01843 0.93471 1.20075 1.00187 0.94157 0.93103 1.17839 0.95360 0.94702 0.91971 1.20884 0.94978 0.93976 1.00170 1.20970 1.01855 1.02086 0.91688 1.17775 0.93683 0.93512 0.88354 1.91485 1.71591 1.76925 1.72147 1.21063 0.98096 0.96086 1.01240 1.21208 0.97550 0.99066 0.92137 1.84017 1.45803 1.39395 1.36791 0.92442 0.80079 0.83621 0.83986 0.84532 0.84449 0.84472 0.84170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.23 12.83 55.43 0.71 -23.52 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.13 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 7 C -0.57 -15.37 8.75 -34.44 -0.30 -15.67 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.30 7.45 3.29 -29.03 -0.10 7.35 16 10 H 0.09 2.39 8.13 -51.93 -0.42 1.97 16 11 O -0.56 -14.10 12.70 -37.55 -0.48 -14.58 16 12 C 0.04 0.94 6.11 -35.56 -0.22 0.72 16 13 C -0.25 -4.75 10.78 -39.80 -0.43 -5.18 16 14 C -0.17 -2.86 10.26 -39.38 -0.40 -3.27 16 15 C -0.03 -0.46 7.03 -36.50 -0.26 -0.72 16 16 C 0.00 0.02 5.87 -104.98 -0.62 -0.59 16 17 C -0.08 -0.96 9.56 -39.19 -0.37 -1.34 16 18 C -0.15 -1.58 10.01 -39.57 -0.40 -1.97 16 19 C 0.09 1.01 7.30 -39.33 -0.29 0.72 16 20 F -0.14 -1.70 17.26 2.25 0.04 -1.66 16 21 C -0.15 -1.71 10.01 -39.58 -0.40 -2.11 16 22 C -0.08 -1.10 9.72 -39.19 -0.38 -1.48 16 23 O -0.16 -3.38 10.33 2.30 0.02 -3.36 16 24 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.35 8.06 8.96 45.56 0.41 8.47 16 26 H 0.15 2.55 8.06 -52.48 -0.42 2.13 16 27 H 0.14 1.86 7.26 -52.49 -0.38 1.47 16 28 H 0.14 1.32 6.99 -52.49 -0.37 0.96 16 29 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.14 1.86 7.91 -52.49 -0.42 1.45 16 LS Contribution 287.54 15.07 4.33 4.33 Total: -1.00 -29.57 287.54 -6.63 -36.20 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -1.99 Total: 8.40 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -4.25 Total: -21.40 kcal Atomic # 7 Polarization: -24.23 SS G_CDS: 0.71 Total: -23.52 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.45 Total: -17.94 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.57 -6.63 -36.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535701781.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.163 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds