Wall clock time and date at job start Mon Mar 30 2020 06:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47050 * 240.00009 * 3 2 1 5 5 H 1.48496 * 109.47289 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46492 * 119.99983 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 11 11 O 1.42896 * 109.47156 * 59.72527 * 9 7 2 12 12 C 1.50696 * 109.47259 * 179.72713 * 9 7 2 13 13 C 1.34719 * 125.66630 * 99.71721 * 12 9 7 14 14 C 1.40947 * 107.03538 * 179.85008 * 13 12 9 15 15 C 1.35953 * 106.73667 * 0.40614 * 14 13 12 16 16 C 1.47791 * 125.92926 * 179.76952 * 15 14 13 17 17 C 1.39594 * 120.12066 * 359.72912 * 16 15 14 18 18 C 1.37930 * 119.87439 * 179.74650 * 17 16 15 19 19 C 1.38580 * 120.11942 * 0.52575 * 18 17 16 20 20 F 1.35102 * 119.87612 * 179.70395 * 19 18 17 21 21 C 1.38572 * 120.24420 * 359.72647 * 19 18 17 22 22 C 1.37917 * 120.12666 * 0.02562 * 21 19 18 23 23 O 1.34320 * 125.66412 * 280.02074 * 12 9 7 24 24 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 25 25 H 0.96701 * 114.00155 * 59.99751 * 11 9 7 26 26 H 1.08007 * 126.48197 * 359.97438 * 13 12 9 27 27 H 1.08001 * 126.63316 * 180.11756 * 14 13 12 28 28 H 1.07997 * 120.06426 * 359.97429 * 17 16 15 29 29 H 1.07998 * 119.93506 * 180.25304 * 18 17 16 30 30 H 1.08002 * 119.93510 * 179.97438 * 21 19 18 31 31 H 1.07998 * 120.06699 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6963 1.2126 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 1 0.6283 -2.5592 0.8921 11 8 0.4241 -2.5719 -1.1637 12 6 2.2302 -3.6446 -0.0079 13 6 2.6051 -4.3645 1.0673 14 6 3.5261 -5.3314 0.6162 15 6 3.6706 -5.1401 -0.7220 16 6 4.5447 -5.9229 -1.6205 17 6 5.3224 -6.9635 -1.1096 18 6 6.1324 -7.6942 -1.9537 19 6 6.1834 -7.3897 -3.3047 20 9 6.9831 -8.1048 -4.1259 21 6 5.4176 -6.3544 -3.8162 22 6 4.6002 -5.6205 -2.9823 23 8 2.8785 -4.1137 -1.0867 24 1 -0.4851 0.8401 0.0004 25 1 0.9124 -2.5243 -1.9970 26 1 2.2629 -4.2280 2.0826 27 1 4.0246 -6.0768 1.2181 28 1 5.2870 -7.1985 -0.0561 29 1 6.7313 -8.5021 -1.5601 30 1 5.4615 -6.1211 -4.8698 31 1 4.0034 -4.8140 -3.3821 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535701781.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:36 Heat of formation + Delta-G solvation = -80.430173 kcal Electronic energy + Delta-G solvation = -18362.864949 eV Core-core repulsion = 15103.429024 eV Total energy + Delta-G solvation = -3259.435925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.079 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.92699 -43.45063 -39.84492 -37.67433 -34.40880 -34.09251 -32.96159 -32.16811 -30.34842 -27.88513 -25.12552 -24.30659 -23.22767 -22.22391 -21.15461 -19.27183 -18.96437 -18.30875 -17.17203 -17.05234 -16.91436 -16.74692 -16.58271 -15.60982 -15.26460 -15.04670 -14.64394 -14.54091 -14.06326 -13.90582 -13.68845 -13.55389 -13.39809 -13.05328 -12.92630 -12.79179 -12.16206 -12.00044 -11.59514 -10.92618 -10.84113 -10.60564 -10.23331 -10.17751 -8.72026 -8.20337 -6.51400 -0.36154 0.20819 1.06184 1.40590 1.41666 1.50546 1.74264 1.93831 2.36709 2.66764 3.02960 3.20415 3.55647 3.72421 3.87635 4.03152 4.12687 4.20575 4.25195 4.33602 4.70061 4.89210 4.90603 4.93576 5.04248 5.07726 5.16730 5.28515 5.44732 5.56005 5.66417 5.80708 5.85529 6.30574 6.55032 7.16271 7.31969 8.80670 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.030857 B = 0.004314 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.193481 B = 6488.295026 C = 6805.209760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.035 3.965 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.586 4.586 8 H 0.054 0.946 9 C 0.300 3.700 10 H 0.069 0.931 11 O -0.571 6.571 12 C -0.004 4.004 13 C -0.238 4.238 14 C -0.174 4.174 15 C -0.019 4.019 16 C -0.029 4.029 17 C -0.070 4.070 18 C -0.139 4.139 19 C 0.087 3.913 20 F -0.142 7.142 21 C -0.147 4.147 22 C -0.092 4.092 23 O -0.183 6.183 24 H 0.268 0.732 25 H 0.362 0.638 26 H 0.158 0.842 27 H 0.185 0.815 28 H 0.163 0.837 29 H 0.170 0.830 30 H 0.155 0.845 31 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.029 -13.907 -3.008 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.169 4.169 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.623 4.623 8 H 0.072 0.928 9 C 0.242 3.758 10 H 0.086 0.914 11 O -0.375 6.375 12 C -0.056 4.056 13 C -0.257 4.257 14 C -0.192 4.192 15 C -0.068 4.068 16 C -0.029 4.029 17 C -0.088 4.088 18 C -0.158 4.158 19 C 0.068 3.932 20 F -0.121 7.121 21 C -0.166 4.166 22 C -0.110 4.110 23 O -0.080 6.080 24 H 0.077 0.923 25 H 0.207 0.793 26 H 0.175 0.825 27 H 0.202 0.798 28 H 0.181 0.819 29 H 0.188 0.812 30 H 0.173 0.827 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.385 -13.777 -2.877 18.103 hybrid contribution 0.562 1.036 -0.356 1.232 sum 11.947 -12.741 -3.233 17.763 Atomic orbital electron populations 1.70161 1.07490 1.28176 1.47024 1.25840 0.95576 1.02732 0.92747 0.85527 0.78409 0.78038 0.79161 1.19493 1.20223 1.19146 1.21702 0.93225 0.91498 1.55922 0.92820 1.18079 0.84714 0.86212 0.86758 0.91364 1.86505 1.38686 1.96091 1.16228 1.24408 0.97704 0.98437 0.85018 1.21733 1.04282 0.99596 1.00053 1.22039 1.01672 1.02160 0.93360 1.20826 0.98905 0.92739 0.94358 1.17995 0.96708 0.96196 0.92028 1.21160 0.93566 0.92416 1.01616 1.21303 1.01258 1.02250 0.90959 1.17978 0.93174 0.93135 0.88963 1.91496 1.71484 1.76812 1.72262 1.21203 0.97532 0.95830 1.02003 1.21220 0.98081 0.99349 0.92334 1.83953 1.46592 1.40683 1.36783 0.92288 0.79285 0.82452 0.79765 0.81944 0.81239 0.82720 0.85153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -51.78 12.83 21.45 0.28 -51.51 16 2 C 0.04 1.92 5.40 84.65 0.46 2.38 16 3 Si 0.96 42.67 29.54 68.60 2.03 44.70 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 7 C -0.59 -32.43 8.75 25.60 0.22 -32.20 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 9 C 0.30 15.70 3.29 29.10 0.10 15.79 16 10 H 0.07 3.79 8.13 -2.39 -0.02 3.77 16 11 O -0.57 -30.40 12.70 -146.76 -1.86 -32.27 16 12 C 0.00 -0.20 6.11 24.88 0.15 -0.05 16 13 C -0.24 -9.12 10.78 22.13 0.24 -8.88 16 14 C -0.17 -5.48 10.26 22.40 0.23 -5.25 16 15 C -0.02 -0.67 7.03 24.27 0.17 -0.50 16 16 C -0.03 -0.79 5.87 -20.09 -0.12 -0.91 16 17 C -0.07 -1.39 9.56 22.52 0.22 -1.17 16 18 C -0.14 -2.41 10.01 22.28 0.22 -2.19 16 19 C 0.09 1.76 7.30 22.43 0.16 1.93 16 20 F -0.14 -2.93 17.26 44.97 0.78 -2.15 16 21 C -0.15 -3.15 10.01 22.27 0.22 -2.93 16 22 C -0.09 -2.38 9.72 22.52 0.22 -2.16 16 23 O -0.18 -7.73 10.33 -4.17 -0.04 -7.78 16 24 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 25 H 0.36 17.41 8.96 -74.06 -0.66 16.75 16 26 H 0.16 5.47 8.06 -2.91 -0.02 5.44 16 27 H 0.19 4.05 7.26 -2.91 -0.02 4.03 16 28 H 0.16 2.34 6.99 -2.91 -0.02 2.32 16 29 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 30 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.13 3.55 7.91 -2.91 -0.02 3.53 16 Total: -1.00 -65.01 287.54 4.17 -60.84 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.51 Total: 24.31 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 2.49 Total: -36.14 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: 0.28 Total: -51.51 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.91 Total: -40.04 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -65.01 4.17 -60.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535701781.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.590 kcal (2) G-P(sol) polarization free energy of solvation -65.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds