Wall clock time and date at job start Mon Mar 30 2020 06:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31034 * 1 3 3 Si 1.86803 * 120.00082 * 2 1 4 4 H 1.48507 * 109.46946 * 274.98110 * 3 2 1 5 5 H 1.48501 * 109.46864 * 34.98028 * 3 2 1 6 6 H 1.48496 * 109.47431 * 154.98142 * 3 2 1 7 7 C 1.39674 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00204 * 186.00971 * 7 2 1 9 9 C 1.41162 * 120.00079 * 6.01092 * 7 2 1 10 10 C 1.38923 * 126.32920 * 174.30075 * 9 7 2 11 11 N 1.37943 * 106.62671 * 179.88788 * 10 9 7 12 12 C 1.35299 * 107.35846 * 0.20944 * 11 10 9 13 13 N 1.32332 * 109.69924 * 359.74636 * 12 11 10 14 14 S 1.76284 * 109.01200 * 179.68843 * 12 11 10 15 15 C 1.75719 * 90.66380 * 0.09112 * 14 12 11 16 16 C 1.30868 * 110.68488 * 0.31035 * 15 14 12 17 17 C 1.53129 * 123.11935 * 178.62483 * 16 15 14 18 18 C 1.52879 * 107.67476 * 294.63409 * 17 16 15 19 19 C 1.51059 * 111.58394 * 81.36810 * 18 17 16 20 20 C 1.51154 * 115.54460 * 288.28066 * 19 18 17 21 21 C 1.52480 * 124.71109 * 180.33026 * 15 14 12 22 22 H 0.97001 * 119.99788 * 359.97438 * 1 2 3 23 23 H 1.08003 * 126.68707 * 359.85620 * 10 9 7 24 24 H 1.09002 * 109.81543 * 54.17359 * 17 16 15 25 25 H 1.09001 * 109.81664 * 175.08077 * 17 16 15 26 26 H 1.09004 * 109.05869 * 320.82858 * 18 17 16 27 27 H 1.08999 * 109.00508 * 201.87746 * 18 17 16 28 28 H 1.08999 * 108.26311 * 166.70541 * 19 18 17 29 29 H 1.08994 * 108.26423 * 49.85962 * 19 18 17 30 30 H 1.08999 * 109.16714 * 310.57404 * 20 19 18 31 31 H 1.09005 * 109.15959 * 191.37987 * 20 19 18 32 32 H 1.08994 * 109.83223 * 6.83626 * 21 15 14 33 33 H 1.08998 * 109.83069 * 127.72397 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 2.3866 2.1072 -1.3949 5 1 1.4984 2.6200 0.8027 6 1 3.5906 1.4121 0.5921 7 6 2.0087 -1.2096 -0.0005 8 1 3.0842 -1.2123 0.0974 9 6 1.3087 -2.4287 -0.1291 10 6 1.8725 -3.6920 -0.2565 11 7 0.8247 -4.5842 -0.3504 12 6 -0.3218 -3.8687 -0.2852 13 7 -0.0383 -2.5832 -0.1506 14 16 -1.6933 -4.9691 -0.4106 15 6 -0.6054 -6.3427 -0.5418 16 6 0.6421 -5.9516 -0.4838 17 6 1.8262 -6.9209 -0.5399 18 6 1.7734 -7.7915 0.7157 19 6 0.7926 -8.9300 0.5615 20 6 -0.6675 -8.5393 0.5785 21 6 -1.0521 -7.7919 -0.7019 22 1 -0.4850 0.8401 0.0004 23 1 2.9259 -3.9292 -0.2784 24 1 1.7486 -7.5481 -1.4280 25 1 2.7612 -6.3610 -0.5625 26 1 1.4733 -7.1756 1.5635 27 1 2.7658 -8.1999 0.9064 28 1 0.9654 -9.6414 1.3691 29 1 1.0004 -9.4345 -0.3820 30 1 -0.8559 -7.8965 1.4384 31 1 -1.2774 -9.4386 0.6647 32 1 -2.1320 -7.8325 -0.8436 33 1 -0.5497 -8.2412 -1.5585 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259867901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:02 Heat of formation + Delta-G solvation = 68.548840 kcal Electronic energy + Delta-G solvation = -17257.839799 eV Core-core repulsion = 14603.370015 eV Total energy + Delta-G solvation = -2654.469783 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88105 -38.03031 -34.56670 -32.83561 -32.14621 -29.60555 -28.64798 -26.41014 -24.33887 -23.73668 -21.17304 -20.49130 -19.62334 -18.33890 -17.51638 -16.35255 -15.25695 -14.88159 -14.81908 -14.48700 -14.18371 -13.67415 -13.37537 -13.05233 -12.79811 -12.57856 -12.01787 -11.69313 -11.29002 -11.23575 -11.00775 -10.97026 -10.67961 -10.65541 -10.50459 -10.23706 -10.07257 -10.02071 -9.20817 -9.02948 -8.29639 -7.44326 -6.51351 -6.38879 -4.22065 1.91443 1.98203 2.54724 3.10196 3.19324 3.23023 3.49214 3.80750 4.11827 4.40030 4.66919 4.79625 4.94338 5.02503 5.24932 5.38363 5.55344 5.61989 5.62692 5.70089 5.77994 5.83486 6.03547 6.04875 6.12986 6.16674 6.24551 6.36587 6.57620 6.93920 7.27523 7.47697 7.65199 8.16549 8.46283 8.91170 9.05897 9.64399 10.54489 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.038852 B = 0.005523 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.509202 B = 5068.725015 C = 5639.961256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.761 5.761 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.445 4.445 8 H 0.083 0.917 9 C 0.228 3.772 10 C -0.238 4.238 11 N -0.399 5.399 12 C 0.122 3.878 13 N -0.419 5.419 14 S 0.112 5.888 15 C -0.245 4.245 16 C 0.102 3.898 17 C -0.051 4.051 18 C -0.112 4.112 19 C -0.115 4.115 20 C -0.116 4.116 21 C -0.022 4.022 22 H 0.272 0.728 23 H 0.149 0.851 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.001 -15.133 -0.343 15.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.147 4.147 3 Si 0.734 3.266 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.479 4.479 8 H 0.102 0.898 9 C 0.104 3.896 10 C -0.364 4.364 11 N -0.082 5.082 12 C -0.243 4.243 13 N -0.146 5.146 14 S 0.362 5.638 15 C -0.366 4.366 16 C -0.011 4.011 17 C -0.091 4.091 18 C -0.150 4.150 19 C -0.153 4.153 20 C -0.154 4.154 21 C -0.062 4.062 22 H 0.082 0.918 23 H 0.166 0.834 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.087 -14.114 -0.255 14.270 hybrid contribution 2.470 0.194 -0.075 2.479 sum 0.383 -13.920 -0.330 13.929 Atomic orbital electron populations 1.70109 1.06898 1.27708 1.33835 1.25870 0.94830 1.00691 0.93270 0.86307 0.80295 0.81265 0.78767 1.19746 1.20400 1.18765 1.18540 0.94045 0.88111 1.47229 0.89848 1.18445 0.86601 0.91260 0.93304 1.22452 0.90431 0.88010 1.35526 1.43330 1.08462 1.03435 1.52974 1.26074 0.89900 0.94243 1.14129 1.71791 1.15460 1.07215 1.20176 1.83884 1.03199 0.92553 1.84153 1.23268 0.94267 0.99781 1.19253 1.19573 0.95599 0.83062 1.02879 1.20793 0.94426 0.94970 0.98898 1.21103 0.99281 0.96850 0.97803 1.20829 0.94713 0.97788 1.01923 1.21257 0.95963 0.99850 0.98318 1.20277 1.00587 0.87402 0.97950 0.91785 0.83356 0.89885 0.90470 0.91631 0.91424 0.92387 0.92342 0.91482 0.91618 0.90833 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.01 11.96 55.53 0.66 -21.34 16 2 C 0.07 2.02 5.48 -17.36 -0.10 1.92 16 3 Si 0.91 19.88 29.56 -169.99 -5.03 14.86 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 6 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 7 C -0.45 -12.67 9.36 -37.94 -0.36 -13.02 16 8 H 0.08 2.20 7.85 -52.49 -0.41 1.79 16 9 C 0.23 6.65 6.66 -84.84 -0.57 6.08 16 10 C -0.24 -6.12 11.80 -14.55 -0.17 -6.29 16 11 N -0.40 -9.51 3.14 -57.42 -0.18 -9.69 16 12 C 0.12 3.16 8.89 -88.59 -0.79 2.37 16 13 N -0.42 -12.50 9.60 -11.01 -0.11 -12.60 16 14 S 0.11 2.23 23.35 -107.50 -2.51 -0.28 16 15 C -0.24 -4.15 5.57 -35.10 -0.20 -4.35 16 16 C 0.10 1.92 6.05 -79.99 -0.48 1.43 16 17 C -0.05 -0.72 5.84 -26.73 -0.16 -0.88 16 18 C -0.11 -1.35 5.56 -27.77 -0.15 -1.50 16 19 C -0.12 -1.14 5.16 -28.64 -0.15 -1.28 16 20 C -0.12 -1.23 5.61 -27.57 -0.15 -1.38 16 21 C -0.02 -0.27 5.86 -26.91 -0.16 -0.43 16 22 H 0.27 7.15 8.30 -40.82 -0.34 6.81 16 23 H 0.15 3.41 8.06 -52.48 -0.42 2.99 16 24 H 0.08 1.00 7.89 -51.93 -0.41 0.59 16 25 H 0.08 1.15 7.90 -51.93 -0.41 0.74 16 26 H 0.06 0.93 7.89 -51.93 -0.41 0.52 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.51 7.75 -51.93 -0.40 0.11 16 30 H 0.07 0.83 7.91 -51.93 -0.41 0.42 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.81 7.89 -51.93 -0.41 0.40 16 LS Contribution 284.78 15.07 4.29 4.29 Total: -1.00 -32.69 284.78 -10.40 -43.09 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.11 Total: -1.01 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: -3.43 Total: -17.32 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: 0.38 Total: -43.64 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.86 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.51 Total: -0.28 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.69 -10.40 -43.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.638 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds