Wall clock time and date at job start Mon Mar 30 2020 06:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31034 * 1 3 3 Si 1.86803 * 120.00082 * 2 1 4 4 H 1.48507 * 109.46946 * 274.98110 * 3 2 1 5 5 H 1.48501 * 109.46864 * 34.98028 * 3 2 1 6 6 H 1.48496 * 109.47431 * 154.98142 * 3 2 1 7 7 C 1.39674 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00204 * 186.00971 * 7 2 1 9 9 C 1.41162 * 120.00079 * 6.01092 * 7 2 1 10 10 C 1.38923 * 126.32920 * 174.30075 * 9 7 2 11 11 N 1.37943 * 106.62671 * 179.88788 * 10 9 7 12 12 C 1.35299 * 107.35846 * 0.20944 * 11 10 9 13 13 N 1.32332 * 109.69924 * 359.74636 * 12 11 10 14 14 S 1.76284 * 109.01200 * 179.68843 * 12 11 10 15 15 C 1.75719 * 90.66380 * 0.09112 * 14 12 11 16 16 C 1.30868 * 110.68488 * 0.31035 * 15 14 12 17 17 C 1.53129 * 123.11935 * 178.62483 * 16 15 14 18 18 C 1.52879 * 107.67476 * 294.63409 * 17 16 15 19 19 C 1.51059 * 111.58394 * 81.36810 * 18 17 16 20 20 C 1.51154 * 115.54460 * 288.28066 * 19 18 17 21 21 C 1.52480 * 124.71109 * 180.33026 * 15 14 12 22 22 H 0.97001 * 119.99788 * 359.97438 * 1 2 3 23 23 H 1.08003 * 126.68707 * 359.85620 * 10 9 7 24 24 H 1.09002 * 109.81543 * 54.17359 * 17 16 15 25 25 H 1.09001 * 109.81664 * 175.08077 * 17 16 15 26 26 H 1.09004 * 109.05869 * 320.82858 * 18 17 16 27 27 H 1.08999 * 109.00508 * 201.87746 * 18 17 16 28 28 H 1.08999 * 108.26311 * 166.70541 * 19 18 17 29 29 H 1.08994 * 108.26423 * 49.85962 * 19 18 17 30 30 H 1.08999 * 109.16714 * 310.57404 * 20 19 18 31 31 H 1.09005 * 109.15959 * 191.37987 * 20 19 18 32 32 H 1.08994 * 109.83223 * 6.83626 * 21 15 14 33 33 H 1.08998 * 109.83069 * 127.72397 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2444 1.6177 0.0000 4 1 2.3866 2.1072 -1.3949 5 1 1.4984 2.6200 0.8027 6 1 3.5906 1.4121 0.5921 7 6 2.0087 -1.2096 -0.0005 8 1 3.0842 -1.2123 0.0974 9 6 1.3087 -2.4287 -0.1291 10 6 1.8725 -3.6920 -0.2565 11 7 0.8247 -4.5842 -0.3504 12 6 -0.3218 -3.8687 -0.2852 13 7 -0.0383 -2.5832 -0.1506 14 16 -1.6933 -4.9691 -0.4106 15 6 -0.6054 -6.3427 -0.5418 16 6 0.6421 -5.9516 -0.4838 17 6 1.8262 -6.9209 -0.5399 18 6 1.7734 -7.7915 0.7157 19 6 0.7926 -8.9300 0.5615 20 6 -0.6675 -8.5393 0.5785 21 6 -1.0521 -7.7919 -0.7019 22 1 -0.4850 0.8401 0.0004 23 1 2.9259 -3.9292 -0.2784 24 1 1.7486 -7.5481 -1.4280 25 1 2.7612 -6.3610 -0.5625 26 1 1.4733 -7.1756 1.5635 27 1 2.7658 -8.1999 0.9064 28 1 0.9654 -9.6414 1.3691 29 1 1.0004 -9.4345 -0.3820 30 1 -0.8559 -7.8965 1.4384 31 1 -1.2774 -9.4386 0.6647 32 1 -2.1320 -7.8325 -0.8436 33 1 -0.5497 -8.2412 -1.5585 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259867901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:01 Heat of formation + Delta-G solvation = 49.713720 kcal Electronic energy + Delta-G solvation = -17258.656551 eV Core-core repulsion = 14603.370015 eV Total energy + Delta-G solvation = -2655.286535 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 262.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.68849 -39.28318 -36.18290 -34.66456 -33.20843 -31.14209 -30.62889 -28.04713 -25.73764 -25.10358 -22.85161 -21.87685 -21.03753 -20.03529 -19.08365 -18.26501 -16.88800 -16.52172 -16.13108 -15.91620 -15.46015 -14.88421 -14.76905 -14.65869 -14.16906 -14.05301 -13.24797 -13.09645 -12.95043 -12.86109 -12.55418 -12.36852 -12.21164 -11.85584 -11.77789 -11.51347 -11.45706 -11.40062 -10.96438 -10.86384 -10.30733 -9.33425 -8.38274 -8.29219 -6.32685 0.24761 0.32728 0.96170 1.38347 1.39327 1.55537 1.68719 2.14279 2.29864 2.37783 3.52295 3.55319 3.90483 3.96372 4.01573 4.10245 4.25003 4.38642 4.57992 4.63159 4.68723 4.85708 4.95596 4.97304 5.08200 5.20913 5.25255 5.30901 5.32321 5.34969 5.53331 5.54339 5.75237 6.15943 6.55063 6.91540 7.00066 7.65496 8.58365 Molecular weight = 262.08amu Principal moments of inertia in cm(-1) A = 0.038852 B = 0.005523 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.509202 B = 5068.725015 C = 5639.961256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.023 3.977 3 Si 0.994 3.006 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.485 4.485 8 H 0.090 0.910 9 C 0.183 3.817 10 C -0.232 4.232 11 N -0.401 5.401 12 C 0.085 3.915 13 N -0.479 5.479 14 S 0.133 5.867 15 C -0.213 4.213 16 C 0.066 3.934 17 C -0.045 4.045 18 C -0.108 4.108 19 C -0.115 4.115 20 C -0.114 4.114 21 C -0.023 4.023 22 H 0.275 0.725 23 H 0.169 0.831 24 H 0.114 0.886 25 H 0.065 0.935 26 H 0.034 0.966 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.489 -18.288 -0.856 18.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.192 4.192 3 Si 0.814 3.186 4 H -0.190 1.190 5 H -0.196 1.196 6 H -0.175 1.175 7 C -0.519 4.519 8 H 0.108 0.892 9 C 0.058 3.942 10 C -0.360 4.360 11 N -0.083 5.083 12 C -0.280 4.280 13 N -0.207 5.207 14 S 0.382 5.618 15 C -0.333 4.333 16 C -0.044 4.044 17 C -0.085 4.085 18 C -0.146 4.146 19 C -0.153 4.153 20 C -0.152 4.152 21 C -0.063 4.063 22 H 0.085 0.915 23 H 0.186 0.814 24 H 0.132 0.868 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.608 -17.359 -0.771 17.450 hybrid contribution 2.220 0.865 0.070 2.384 sum 0.612 -16.494 -0.701 16.520 Atomic orbital electron populations 1.70262 1.08947 1.28824 1.35692 1.26908 0.95661 1.04616 0.92060 0.85040 0.78935 0.75581 0.79040 1.18997 1.19641 1.17523 1.18933 0.94574 0.89171 1.49208 0.89192 1.18989 0.87296 0.92917 0.94967 1.22701 0.91664 0.87853 1.33765 1.43552 1.07242 1.05337 1.52154 1.26881 0.92704 0.94358 1.14037 1.71634 1.16181 1.09802 1.23127 1.83726 1.02177 0.92368 1.83500 1.24167 0.92879 1.01288 1.14944 1.20449 0.98134 0.81485 1.04352 1.20986 0.91764 0.94349 1.01419 1.21119 1.01397 0.96844 0.95269 1.20844 0.93356 0.97041 1.04032 1.21276 0.97256 1.00464 0.96179 1.20646 1.02046 0.83554 1.00023 0.91546 0.81355 0.86787 0.91649 0.94733 0.89212 0.90547 0.89919 0.93833 0.88307 0.89113 0.87700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.57 11.96 21.79 0.26 -49.31 16 2 C 0.02 1.31 5.48 85.16 0.47 1.78 16 3 Si 0.99 42.27 29.56 68.60 2.03 44.30 16 4 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 7 C -0.48 -29.02 9.36 23.34 0.22 -28.80 16 8 H 0.09 4.98 7.85 -2.91 -0.02 4.95 16 9 C 0.18 11.32 6.66 39.44 0.26 11.58 16 10 C -0.23 -12.40 11.80 83.90 0.99 -11.41 16 11 N -0.40 -19.50 3.14 -335.57 -1.05 -20.55 16 12 C 0.09 4.59 8.89 179.64 1.60 6.18 16 13 N -0.48 -30.28 9.60 -188.74 -1.81 -32.09 16 14 S 0.13 5.27 23.35 -56.49 -1.32 3.95 16 15 C -0.21 -6.76 5.57 26.36 0.15 -6.62 16 16 C 0.07 2.38 6.05 42.37 0.26 2.64 16 17 C -0.05 -1.16 5.84 30.60 0.18 -0.99 16 18 C -0.11 -2.26 5.56 29.92 0.17 -2.09 16 19 C -0.12 -1.70 5.16 29.36 0.15 -1.55 16 20 C -0.11 -1.88 5.61 30.05 0.17 -1.71 16 21 C -0.02 -0.45 5.86 30.48 0.18 -0.27 16 22 H 0.27 15.27 8.30 -92.71 -0.77 14.50 16 23 H 0.17 7.97 8.06 -2.91 -0.02 7.94 16 24 H 0.11 2.23 7.89 -2.39 -0.02 2.21 16 25 H 0.06 1.84 7.90 -2.39 -0.02 1.82 16 26 H 0.03 0.93 7.89 -2.38 -0.02 0.91 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 0.90 7.75 -2.39 -0.02 0.88 16 30 H 0.04 0.94 7.91 -2.39 -0.02 0.92 16 31 H 0.10 1.08 8.14 -2.38 -0.02 1.07 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.10 1.58 7.89 -2.39 -0.02 1.57 16 Total: -1.00 -78.20 284.78 4.00 -74.19 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 1.11 Total: 10.76 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 4.78 Total: -31.25 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -2.60 Total: -101.95 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Atomic # 16 Polarization: 5.27 SS G_CDS: -1.32 Total: 3.95 kcal Total: -78.20 4.00 -74.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259867901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.908 kcal (2) G-P(sol) polarization free energy of solvation -78.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds