Wall clock time and date at job start Mon Mar 30 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20762 * 119.99948 * 2 1 4 4 C 1.50702 * 119.99810 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46969 * 180.02562 * 4 2 1 6 6 C 1.50697 * 109.46967 * 180.02562 * 5 4 2 7 7 C 1.38270 * 119.94421 * 270.25509 * 6 5 4 8 8 C 1.38138 * 120.05794 * 180.26220 * 7 6 5 9 9 C 1.38736 * 119.94337 * 359.46080 * 8 7 6 10 10 O 1.35893 * 120.05957 * 180.30421 * 9 8 7 11 11 C 1.42899 * 117.00392 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47433 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47160 * 179.97438 * 12 11 10 14 14 H 1.08007 * 120.00132 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00138 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99612 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00354 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47052 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47140 * 119.99709 * 17 15 13 20 20 H 1.48500 * 109.47240 * 239.99972 * 17 15 13 21 21 C 1.38740 * 119.88595 * 0.28279 * 9 8 7 22 22 C 1.38146 * 119.94197 * 359.97438 * 21 9 8 23 23 H 1.09004 * 109.47240 * 240.00189 * 1 2 3 24 24 H 1.09005 * 109.47051 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46904 * 120.00421 * 1 2 3 26 26 H 1.08997 * 109.46552 * 60.00661 * 4 2 1 27 27 H 1.09003 * 109.47074 * 300.00107 * 4 2 1 28 28 H 1.08999 * 109.46732 * 60.00131 * 5 4 2 29 29 H 1.09002 * 109.47090 * 300.00449 * 5 4 2 30 30 H 1.08004 * 119.97397 * 0.02562 * 7 6 5 31 31 H 1.08002 * 120.03311 * 179.74549 * 8 7 6 32 32 H 1.09002 * 109.46729 * 299.99846 * 11 10 9 33 33 H 1.09001 * 109.47001 * 59.99870 * 11 10 9 34 34 H 1.08994 * 109.46893 * 300.00316 * 12 11 10 35 35 H 1.09001 * 109.46536 * 59.99754 * 12 11 10 36 36 H 0.97001 * 119.99220 * 180.02562 * 16 15 13 37 37 H 1.07993 * 120.02463 * 180.02562 * 21 9 8 38 38 H 1.08006 * 119.96944 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0256 0.0011 6 6 4.5182 -2.3307 0.0011 7 6 4.8583 -2.9313 1.1991 8 6 5.5536 -4.1249 1.2019 9 6 5.9010 -4.7267 0.0011 10 8 6.5797 -5.9040 0.0010 11 6 6.9046 -6.4656 -1.2722 12 6 7.6625 -7.7795 -1.0718 13 6 8.0045 -8.3720 -2.4145 14 1 7.7111 -7.8621 -3.3204 15 6 8.6921 -9.5649 -2.4868 16 7 9.0499 -10.1854 -1.3837 17 14 9.1155 -10.2997 -4.1511 18 1 8.6052 -9.4133 -5.2278 19 1 10.5897 -10.4292 -4.2745 20 1 8.4887 -11.6403 -4.2743 21 6 5.5540 -4.1247 -1.1998 22 6 4.8632 -2.9283 -1.1970 23 1 -0.3634 -0.5138 0.8900 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3633 -0.5139 -0.8899 26 1 1.9971 -1.8770 -0.8892 27 1 1.9971 -1.8763 0.8908 28 1 4.0276 -0.4538 0.8911 29 1 4.0284 -0.4541 -0.8889 30 1 4.5833 -2.4650 2.1337 31 1 5.8226 -4.5916 2.1379 32 1 5.9876 -6.6561 -1.8299 33 1 7.5297 -5.7672 -1.8285 34 1 8.5794 -7.5886 -0.5143 35 1 7.0377 -8.4781 -0.5153 36 1 9.5340 -11.0245 -1.4346 37 1 5.8229 -4.5914 -2.1358 38 1 4.5932 -2.4591 -2.1315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019426545.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:03 Heat of formation + Delta-G solvation = -78.644752 kcal Electronic energy + Delta-G solvation = -18180.116078 eV Core-core repulsion = 15180.050974 eV Total energy + Delta-G solvation = -3000.065104 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.03876 -39.53910 -37.45372 -33.84252 -33.21421 -31.10830 -30.83999 -30.14394 -28.35848 -25.23263 -24.05779 -22.81686 -21.15157 -20.39924 -19.80421 -17.89848 -16.40017 -16.14430 -16.08780 -15.39679 -15.37504 -15.25486 -14.82007 -14.51260 -14.10306 -13.63971 -13.25080 -12.98234 -12.83525 -12.64941 -12.40821 -12.33028 -12.24620 -11.46986 -11.34340 -11.25894 -11.13395 -10.87754 -10.70256 -10.44895 -9.99268 -9.79876 -9.67733 -9.30440 -8.85285 -8.47026 -7.77066 -6.12278 -4.16910 1.49593 1.59223 1.66195 3.25190 3.32303 3.35847 3.71109 3.83624 3.95487 4.39738 4.62975 4.75050 4.82878 4.93104 4.97361 5.06119 5.11773 5.24267 5.24707 5.39019 5.46932 5.51407 5.66491 5.74641 5.88855 5.94166 6.01304 6.05073 6.17588 6.44289 6.54560 6.70346 6.72039 6.97524 7.20715 7.48895 7.61962 7.79557 8.04292 8.21919 8.88896 9.47564 10.99352 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.043726 B = 0.002788 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.204290 B =10040.893105 C =10386.202980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.352 3.648 3 O -0.460 6.460 4 C -0.168 4.168 5 C -0.062 4.062 6 C -0.141 4.141 7 C -0.078 4.078 8 C -0.160 4.160 9 C 0.144 3.856 10 O -0.316 6.316 11 C 0.065 3.935 12 C 0.025 3.975 13 C -0.526 4.526 14 H 0.059 0.941 15 C 0.060 3.940 16 N -0.889 5.889 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.210 4.210 22 C -0.075 4.075 23 H 0.092 0.908 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.128 0.872 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.028 0.972 35 H 0.028 0.972 36 H 0.263 0.737 37 H 0.130 0.870 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.282 17.154 3.278 23.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C 0.228 3.772 3 O -0.334 6.334 4 C -0.206 4.206 5 C -0.099 4.099 6 C -0.141 4.141 7 C -0.096 4.096 8 C -0.179 4.179 9 C 0.097 3.903 10 O -0.229 6.229 11 C -0.009 4.009 12 C -0.013 4.013 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.229 4.229 22 C -0.093 4.093 23 H 0.110 0.890 24 H 0.098 0.902 25 H 0.110 0.890 26 H 0.118 0.882 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.148 0.852 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.791 17.417 3.494 23.116 hybrid contribution 0.187 -0.659 -1.132 1.323 sum -14.604 16.758 2.362 22.353 Atomic orbital electron populations 1.22343 0.94628 1.04817 1.04619 1.24734 0.91964 0.90451 0.70015 1.90419 1.72072 1.35259 1.35663 1.22184 0.96191 0.97075 1.05136 1.20248 0.92017 0.94091 1.03568 1.19588 1.03525 0.97770 0.93233 1.20745 0.97131 0.94362 0.97378 1.20453 1.03770 0.97105 0.96568 1.19250 0.91012 0.86294 0.93787 1.86174 1.68938 1.32781 1.35027 1.23332 0.98841 0.97292 0.81426 1.19132 0.95456 0.88560 0.98104 1.21005 1.37020 1.06596 0.91784 0.92321 1.24999 0.95541 0.96812 0.96899 1.69991 1.38849 1.16951 1.26954 0.86428 0.78195 0.79081 0.83661 1.19642 1.20822 1.20818 1.21372 1.05200 0.98492 0.97828 1.20772 0.96783 0.94434 0.97340 0.88957 0.90195 0.88958 0.88201 0.88187 0.90849 0.90885 0.85960 0.85392 0.93132 0.93133 0.95384 0.95393 0.92746 0.85203 0.86306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.99 10.26 36.01 0.37 -0.62 16 2 C 0.35 2.78 7.27 -29.03 -0.21 2.57 16 3 O -0.46 -5.45 16.71 6.00 0.10 -5.35 16 4 C -0.17 -1.23 5.62 -27.88 -0.16 -1.38 16 5 C -0.06 -0.60 4.63 -27.88 -0.13 -0.73 16 6 C -0.14 -1.65 5.13 -104.60 -0.54 -2.19 16 7 C -0.08 -0.95 9.69 -39.61 -0.38 -1.33 16 8 C -0.16 -2.36 9.99 -39.43 -0.39 -2.75 16 9 C 0.14 2.48 6.69 -39.21 -0.26 2.21 16 10 O -0.32 -6.50 10.14 -19.40 -0.20 -6.69 16 11 C 0.07 1.39 4.68 37.16 0.17 1.57 16 12 C 0.02 0.64 5.34 -27.88 -0.15 0.50 16 13 C -0.53 -14.62 9.11 -34.44 -0.31 -14.93 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -26.41 13.29 55.43 0.74 -25.67 16 17 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 C -0.21 -3.23 9.04 -39.43 -0.36 -3.59 16 22 C -0.08 -0.96 9.69 -39.61 -0.38 -1.34 16 23 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 25 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.07 0.72 8.04 -51.93 -0.42 0.30 16 29 H 0.07 0.73 8.04 -51.93 -0.42 0.32 16 30 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 31 H 0.13 1.76 8.06 -52.49 -0.42 1.33 16 32 H 0.05 1.02 7.66 -51.93 -0.40 0.63 16 33 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 34 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 37 H 0.13 1.98 6.30 -52.49 -0.33 1.64 16 38 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 328.49 15.07 4.95 4.95 Total: -1.00 -31.81 328.49 -7.99 -39.81 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -5.73 Total: -2.78 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: -2.83 Total: -20.44 kcal Atomic # 7 Polarization: -26.41 SS G_CDS: 0.74 Total: -25.67 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: -0.10 Total: -12.04 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.81 -7.99 -39.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019426545.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.840 kcal (2) G-P(sol) polarization free energy of solvation -31.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds