Wall clock time and date at job start Mon Mar 30 2020 06:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20762 * 119.99948 * 2 1 4 4 C 1.50702 * 119.99810 * 179.97438 * 2 1 3 5 5 C 1.53002 * 109.46969 * 180.02562 * 4 2 1 6 6 C 1.50697 * 109.46967 * 180.02562 * 5 4 2 7 7 C 1.38270 * 119.94421 * 270.25509 * 6 5 4 8 8 C 1.38138 * 120.05794 * 180.26220 * 7 6 5 9 9 C 1.38736 * 119.94337 * 359.46080 * 8 7 6 10 10 O 1.35893 * 120.05957 * 180.30421 * 9 8 7 11 11 C 1.42899 * 117.00392 * 180.02562 * 10 9 8 12 12 C 1.53003 * 109.47433 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.47160 * 179.97438 * 12 11 10 14 14 H 1.08007 * 120.00132 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00138 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99612 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00354 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47052 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47140 * 119.99709 * 17 15 13 20 20 H 1.48500 * 109.47240 * 239.99972 * 17 15 13 21 21 C 1.38740 * 119.88595 * 0.28279 * 9 8 7 22 22 C 1.38146 * 119.94197 * 359.97438 * 21 9 8 23 23 H 1.09004 * 109.47240 * 240.00189 * 1 2 3 24 24 H 1.09005 * 109.47051 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46904 * 120.00421 * 1 2 3 26 26 H 1.08997 * 109.46552 * 60.00661 * 4 2 1 27 27 H 1.09003 * 109.47074 * 300.00107 * 4 2 1 28 28 H 1.08999 * 109.46732 * 60.00131 * 5 4 2 29 29 H 1.09002 * 109.47090 * 300.00449 * 5 4 2 30 30 H 1.08004 * 119.97397 * 0.02562 * 7 6 5 31 31 H 1.08002 * 120.03311 * 179.74549 * 8 7 6 32 32 H 1.09002 * 109.46729 * 299.99846 * 11 10 9 33 33 H 1.09001 * 109.47001 * 59.99870 * 11 10 9 34 34 H 1.08994 * 109.46893 * 300.00316 * 12 11 10 35 35 H 1.09001 * 109.46536 * 59.99754 * 12 11 10 36 36 H 0.97001 * 119.99220 * 180.02562 * 16 15 13 37 37 H 1.07993 * 120.02463 * 180.02562 * 21 9 8 38 38 H 1.08006 * 119.96944 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 6 3.7647 -1.0256 0.0011 6 6 4.5182 -2.3307 0.0011 7 6 4.8583 -2.9313 1.1991 8 6 5.5536 -4.1249 1.2019 9 6 5.9010 -4.7267 0.0011 10 8 6.5797 -5.9040 0.0010 11 6 6.9046 -6.4656 -1.2722 12 6 7.6625 -7.7795 -1.0718 13 6 8.0045 -8.3720 -2.4145 14 1 7.7111 -7.8621 -3.3204 15 6 8.6921 -9.5649 -2.4868 16 7 9.0499 -10.1854 -1.3837 17 14 9.1155 -10.2997 -4.1511 18 1 8.6052 -9.4133 -5.2278 19 1 10.5897 -10.4292 -4.2745 20 1 8.4887 -11.6403 -4.2743 21 6 5.5540 -4.1247 -1.1998 22 6 4.8632 -2.9283 -1.1970 23 1 -0.3634 -0.5138 0.8900 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3633 -0.5139 -0.8899 26 1 1.9971 -1.8770 -0.8892 27 1 1.9971 -1.8763 0.8908 28 1 4.0276 -0.4538 0.8911 29 1 4.0284 -0.4541 -0.8889 30 1 4.5833 -2.4650 2.1337 31 1 5.8226 -4.5916 2.1379 32 1 5.9876 -6.6561 -1.8299 33 1 7.5297 -5.7672 -1.8285 34 1 8.5794 -7.5886 -0.5143 35 1 7.0377 -8.4781 -0.5153 36 1 9.5340 -11.0245 -1.4346 37 1 5.8229 -4.5914 -2.1358 38 1 4.5932 -2.4591 -2.1315 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019426545.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:03 Heat of formation + Delta-G solvation = -96.281064 kcal Electronic energy + Delta-G solvation = -18180.880846 eV Core-core repulsion = 15180.050974 eV Total energy + Delta-G solvation = -3000.829872 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.12671 -40.39403 -38.72021 -35.55259 -34.48315 -32.46153 -31.82829 -31.41820 -29.28965 -27.05974 -24.99738 -24.22338 -22.59491 -21.70123 -20.40718 -19.37914 -18.19970 -17.11514 -17.03815 -16.92769 -16.54078 -16.24961 -15.98863 -15.71689 -15.17195 -14.57064 -14.40386 -14.34218 -14.30093 -13.85498 -13.41951 -13.13688 -13.08289 -12.91333 -12.85597 -12.50798 -12.42034 -12.28930 -12.05592 -11.75629 -11.54618 -11.53495 -11.35900 -10.63906 -10.57422 -9.92993 -8.97189 -8.27672 -6.41309 0.41607 0.47411 1.08332 1.40735 1.41646 1.55127 2.27807 2.52689 2.78624 3.06867 3.22813 3.86960 3.96905 4.02904 4.13176 4.18040 4.26142 4.29653 4.37310 4.47900 4.56520 4.67167 4.72337 4.73733 4.78051 4.87119 4.99256 5.15215 5.22923 5.26751 5.31171 5.38731 5.45881 5.49141 5.68008 5.69920 5.92454 6.07053 6.57155 6.64118 6.73745 7.28944 8.85723 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.043726 B = 0.002788 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.204290 B =10040.893105 C =10386.202980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.357 3.643 3 O -0.507 6.507 4 C -0.166 4.166 5 C -0.060 4.060 6 C -0.125 4.125 7 C -0.072 4.072 8 C -0.168 4.168 9 C 0.102 3.898 10 O -0.342 6.342 11 C 0.085 3.915 12 C 0.027 3.973 13 C -0.545 4.545 14 H 0.070 0.930 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.977 3.023 18 H -0.258 1.258 19 H -0.277 1.277 20 H -0.276 1.276 21 C -0.219 4.219 22 C -0.076 4.076 23 H 0.113 0.887 24 H 0.073 0.927 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.154 0.846 31 H 0.130 0.870 32 H 0.060 0.940 33 H 0.058 0.942 34 H -0.002 1.002 35 H -0.001 1.001 36 H 0.267 0.733 37 H 0.126 0.874 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.054 18.398 2.192 25.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.236 3.764 3 O -0.385 6.385 4 C -0.204 4.204 5 C -0.098 4.098 6 C -0.125 4.125 7 C -0.090 4.090 8 C -0.186 4.186 9 C 0.057 3.943 10 O -0.257 6.257 11 C 0.011 3.989 12 C -0.010 4.010 13 C -0.583 4.583 14 H 0.089 0.911 15 C -0.198 4.198 16 N -0.570 5.570 17 Si 0.800 3.200 18 H -0.181 1.181 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.238 4.238 22 C -0.094 4.094 23 H 0.131 0.869 24 H 0.092 0.908 25 H 0.130 0.870 26 H 0.133 0.867 27 H 0.136 0.864 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.172 0.828 31 H 0.148 0.852 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.016 0.984 35 H 0.017 0.983 36 H 0.076 0.924 37 H 0.144 0.856 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.591 18.676 2.413 25.097 hybrid contribution 0.657 -0.925 -0.694 1.330 sum -15.933 17.751 1.719 23.915 Atomic orbital electron populations 1.22356 0.92091 1.05071 1.06490 1.25167 0.93377 0.89771 0.68049 1.90420 1.73146 1.36720 1.38209 1.22208 0.94216 0.97215 1.06713 1.20248 0.93519 0.92523 1.03472 1.19889 1.01946 0.97972 0.92692 1.21080 0.95768 0.93149 0.99014 1.20669 1.04067 0.97988 0.95904 1.19597 0.93096 0.86015 0.95629 1.86080 1.70589 1.34923 1.34114 1.22843 0.98700 0.95153 0.82220 1.18974 0.94218 0.90675 0.97120 1.21421 1.37130 1.07124 0.92582 0.91143 1.26055 0.95197 0.97277 1.01266 1.70132 1.39657 1.17559 1.29695 0.85226 0.77991 0.78277 0.78496 1.18125 1.20277 1.20151 1.21448 1.05823 0.99505 0.96976 1.21056 0.95886 0.93435 0.98980 0.86880 0.90843 0.87025 0.86731 0.86408 0.90864 0.91255 0.82847 0.85159 0.92130 0.92404 0.98398 0.98255 0.92429 0.85587 0.83829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.33 10.26 71.24 0.73 -0.60 16 2 C 0.36 4.74 7.27 29.10 0.21 4.95 16 3 O -0.51 -11.34 16.71 -1.46 -0.02 -11.37 16 4 C -0.17 -1.86 5.62 29.85 0.17 -1.69 16 5 C -0.06 -0.99 4.63 29.85 0.14 -0.85 16 6 C -0.12 -2.59 5.13 -19.85 -0.10 -2.70 16 7 C -0.07 -1.59 9.69 22.25 0.22 -1.37 16 8 C -0.17 -4.84 9.99 22.37 0.22 -4.61 16 9 C 0.10 3.55 6.69 22.51 0.15 3.70 16 10 O -0.34 -14.65 10.14 -92.34 -0.94 -15.59 16 11 C 0.09 3.76 4.68 71.98 0.34 4.09 16 12 C 0.03 1.50 5.34 29.85 0.16 1.66 16 13 C -0.54 -30.82 9.11 25.60 0.23 -30.58 16 14 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 15 C 0.00 0.03 5.46 84.65 0.46 0.49 16 16 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 17 Si 0.98 43.45 29.54 68.60 2.03 45.48 16 18 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 19 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 21 C -0.22 -6.60 9.04 22.37 0.20 -6.40 16 22 C -0.08 -1.77 9.69 22.25 0.22 -1.56 16 23 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 24 H 0.07 0.61 8.12 -2.38 -0.02 0.59 16 25 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.07 1.24 8.04 -2.39 -0.02 1.22 16 29 H 0.07 1.23 8.04 -2.39 -0.02 1.21 16 30 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 32 H 0.06 2.50 7.66 -2.39 -0.02 2.48 16 33 H 0.06 2.42 7.66 -2.39 -0.02 2.40 16 34 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 37 H 0.13 3.80 6.30 -2.91 -0.02 3.78 16 38 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -71.19 328.49 5.72 -65.47 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.03 Total: 7.91 kcal Atomic # 6 Polarization: -38.80 SS G_CDS: 3.35 Total: -35.45 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.28 Total: -56.45 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.96 Total: -26.96 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -71.19 5.72 -65.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019426545.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.812 kcal (2) G-P(sol) polarization free energy of solvation -71.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds