Wall clock time and date at job start Mon Mar 30 2020 07:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46813 * 2 1 4 4 C 1.46502 * 120.00084 * 89.99994 * 3 2 1 5 5 C 1.50708 * 109.46949 * 90.00035 * 4 3 2 6 6 H 1.07995 * 119.99820 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00000 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99685 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00068 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47111 * 89.99994 * 9 7 5 11 11 H 1.48502 * 109.47231 * 209.99843 * 9 7 5 12 12 H 1.48501 * 109.47129 * 330.00181 * 9 7 5 13 13 C 1.39671 * 120.00019 * 270.00347 * 3 2 1 14 14 C 1.38985 * 120.03702 * 179.72608 * 13 3 2 15 15 C 1.38133 * 120.06079 * 179.69653 * 14 13 3 16 16 C 1.38190 * 120.14696 * 0.59831 * 15 14 13 17 17 C 1.38905 * 120.07334 * 359.67613 * 16 15 14 18 18 N 1.39926 * 120.03268 * 180.02562 * 17 16 15 19 19 C 1.34777 * 119.99634 * 324.88890 * 18 17 16 20 20 C 1.50703 * 119.99611 * 184.61794 * 19 18 17 21 21 O 1.21288 * 120.00443 * 4.61168 * 19 18 17 22 22 C 1.38758 * 120.03932 * 359.97438 * 13 3 2 23 23 H 1.09001 * 109.46889 * 299.99395 * 1 2 3 24 24 H 1.08991 * 109.47683 * 60.00259 * 1 2 3 25 25 H 1.09008 * 109.46947 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47683 * 119.99733 * 2 1 3 27 27 H 1.08998 * 109.47139 * 240.00154 * 2 1 3 28 28 H 1.09000 * 109.47418 * 209.99922 * 4 3 2 29 29 H 1.08999 * 109.47098 * 330.00179 * 4 3 2 30 30 H 0.97012 * 119.99610 * 180.02562 * 8 7 5 31 31 H 1.07996 * 119.97038 * 359.97438 * 14 13 3 32 32 H 1.08001 * 119.92964 * 180.30004 * 15 14 13 33 33 H 1.07998 * 119.96016 * 179.70142 * 16 15 14 34 34 H 0.96994 * 120.00317 * 144.88472 * 18 17 16 35 35 H 1.09001 * 109.47113 * 359.97438 * 20 19 18 36 36 H 1.09000 * 109.47426 * 119.99890 * 20 19 18 37 37 H 1.09000 * 109.46827 * 239.99685 * 20 19 18 38 38 H 1.08004 * 120.07275 * 359.97438 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 1.2687 5 6 3.6858 1.8352 1.7037 6 1 4.3428 1.2311 1.0957 7 6 4.1491 2.3898 2.8779 8 7 3.3490 3.1258 3.6180 9 14 5.9131 2.0958 3.4175 10 1 6.7851 3.1611 2.8608 11 1 5.9876 2.1196 4.9004 12 1 6.3689 0.7728 2.9201 13 6 2.2509 2.0397 -1.2096 14 6 2.7087 3.3520 -1.2105 15 6 2.9450 4.0016 -2.4064 16 6 2.7154 3.3537 -3.6053 17 6 2.2525 2.0441 -3.6112 18 7 2.0209 1.3887 -4.8256 19 6 1.5526 2.0782 -5.8848 20 6 1.2045 1.3551 -7.1604 21 8 1.4111 3.2806 -5.8114 22 6 2.0204 1.3862 -2.4117 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.0954 3.1412 1.1384 29 1 1.5816 1.6878 2.0284 30 1 3.6751 3.5164 4.4440 31 1 2.8842 3.8629 -0.2753 32 1 3.3053 5.0197 -2.4046 33 1 2.8966 3.8661 -4.5385 34 1 2.1974 0.4383 -4.9052 35 1 1.3964 0.2891 -7.0377 36 1 0.1505 1.5108 -7.3904 37 1 1.8154 1.7424 -7.9758 38 1 1.6612 0.3677 -2.4139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034109852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:18 Heat of formation + Delta-G solvation = -6.231956 kcal Electronic energy + Delta-G solvation = -19450.721685 eV Core-core repulsion = 16486.089386 eV Total energy + Delta-G solvation = -2964.632298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.21069 -38.53101 -36.06224 -34.26403 -32.85796 -31.00365 -30.30127 -29.53192 -27.73761 -26.25099 -23.39241 -22.77518 -21.52153 -20.93432 -19.30412 -17.49798 -16.80814 -16.39014 -15.73773 -15.49495 -15.04536 -14.63389 -14.25249 -13.91268 -13.66200 -13.41294 -12.93634 -12.77159 -12.62408 -12.44744 -12.10942 -11.96750 -11.63846 -11.41114 -11.13597 -11.02679 -10.76861 -10.55045 -10.41084 -10.09829 -9.97871 -9.67465 -9.58477 -8.79473 -8.49540 -7.79201 -6.47299 -6.01586 -4.16508 1.86500 2.30886 2.74043 3.21063 3.27104 3.33711 3.36854 4.11445 4.40784 4.53938 4.71870 4.95622 5.19089 5.22518 5.39526 5.52919 5.58484 5.75189 5.80070 5.84659 5.97644 6.10156 6.12756 6.22224 6.27944 6.40822 6.60567 6.72090 6.89958 6.98667 7.14080 7.28494 7.39718 7.52999 7.64296 7.81847 8.16643 8.20020 8.28912 8.50257 8.92578 9.50306 10.96421 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026271 B = 0.004860 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.572353 B = 5760.167917 C = 6290.203254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.609 5.609 4 C 0.250 3.750 5 C -0.531 4.531 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.255 3.745 14 C -0.195 4.195 15 C -0.063 4.063 16 C -0.196 4.196 17 C 0.172 3.828 18 N -0.670 5.670 19 C 0.505 3.495 20 C -0.169 4.169 21 O -0.528 6.528 22 C -0.243 4.243 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.036 0.964 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.133 0.867 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.406 0.594 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.015 -6.602 -15.335 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.314 5.314 4 C 0.131 3.869 5 C -0.570 4.570 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.199 1.199 13 C 0.147 3.853 14 C -0.217 4.217 15 C -0.083 4.083 16 C -0.218 4.218 17 C 0.078 3.922 18 N -0.315 5.315 19 C 0.293 3.707 20 C -0.228 4.228 21 O -0.404 6.404 22 C -0.268 4.268 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.151 0.849 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.241 0.759 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.199 -5.762 -14.933 16.548 hybrid contribution 1.064 -0.696 0.449 1.348 sum -3.135 -6.459 -14.484 16.166 Atomic orbital electron populations 1.22226 0.97443 1.00855 1.02235 1.21217 0.92983 0.84216 1.01846 1.47159 1.67756 1.12193 1.04336 1.19269 0.96044 0.92896 0.78735 1.21584 0.97070 1.31987 1.06331 0.92253 1.24955 0.97813 0.94975 0.96307 1.69937 1.35593 1.33455 1.14400 0.86529 0.84785 0.78722 0.77607 1.20507 1.21189 1.19933 1.17586 0.90964 0.91145 0.85587 1.20944 1.07392 0.94444 0.98954 1.20731 0.97127 0.98817 0.91587 1.20749 1.07633 0.94902 0.98533 1.17336 0.98026 0.93036 0.83752 1.43603 1.64825 1.12710 1.10383 1.20895 0.76505 0.88056 0.85205 1.21846 1.04584 1.01062 0.95356 1.90738 1.52149 1.14561 1.82912 1.20180 1.15249 1.01174 0.90213 0.92398 0.92939 0.92731 0.90699 0.92163 0.94636 0.95193 0.92669 0.84930 0.86640 0.85856 0.75906 0.90551 0.88616 0.88704 0.86576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 10.24 37.16 0.38 -2.14 16 2 C 0.12 2.09 5.88 -4.04 -0.02 2.07 16 3 N -0.61 -12.73 2.59 -173.14 -0.45 -13.17 16 4 C 0.25 6.20 4.92 -5.19 -0.03 6.17 16 5 C -0.53 -14.34 9.39 -34.44 -0.32 -14.66 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.57 13.29 55.43 0.74 -24.83 16 9 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.25 5.15 6.55 -83.82 -0.55 4.60 16 14 C -0.19 -4.04 9.21 -39.34 -0.36 -4.40 16 15 C -0.06 -1.17 10.03 -39.64 -0.40 -1.57 16 16 C -0.20 -3.56 8.69 -39.35 -0.34 -3.90 16 17 C 0.17 2.87 6.29 -83.72 -0.53 2.34 16 18 N -0.67 -8.37 5.33 -9.88 -0.05 -8.43 16 19 C 0.51 6.38 7.78 -10.98 -0.09 6.30 16 20 C -0.17 -1.20 10.39 36.01 0.37 -0.82 16 21 O -0.53 -9.10 14.53 5.55 0.08 -9.02 16 22 C -0.24 -4.21 9.12 -39.20 -0.36 -4.57 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 26 H 0.07 1.34 8.07 -51.93 -0.42 0.92 16 27 H 0.06 0.92 6.19 -51.93 -0.32 0.60 16 28 H 0.04 0.94 6.18 -51.93 -0.32 0.62 16 29 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 30 H 0.26 7.16 8.31 -40.81 -0.34 6.82 16 31 H 0.13 2.99 6.13 -52.49 -0.32 2.67 16 32 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 33 H 0.12 2.25 6.22 -52.49 -0.33 1.93 16 34 H 0.41 3.56 8.66 -40.82 -0.35 3.21 16 35 H 0.08 0.34 7.92 -51.93 -0.41 -0.07 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.12 1.76 6.14 -52.48 -0.32 1.43 16 LS Contribution 319.03 15.07 4.81 4.81 Total: -1.00 -31.77 319.03 -7.53 -39.30 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.30 Total: 4.13 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -2.34 Total: -8.98 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.24 Total: -46.43 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.08 Total: -9.02 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.77 -7.53 -39.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034109852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.064 kcal (2) G-P(sol) polarization free energy of solvation -31.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds