Wall clock time and date at job start Mon Mar 30 2020 07:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46813 * 2 1 4 4 C 1.46502 * 120.00084 * 89.99994 * 3 2 1 5 5 C 1.50708 * 109.46949 * 90.00035 * 4 3 2 6 6 H 1.07995 * 119.99820 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00000 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99685 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00068 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47111 * 89.99994 * 9 7 5 11 11 H 1.48502 * 109.47231 * 209.99843 * 9 7 5 12 12 H 1.48501 * 109.47129 * 330.00181 * 9 7 5 13 13 C 1.39671 * 120.00019 * 270.00347 * 3 2 1 14 14 C 1.38985 * 120.03702 * 179.72608 * 13 3 2 15 15 C 1.38133 * 120.06079 * 179.69653 * 14 13 3 16 16 C 1.38190 * 120.14696 * 0.59831 * 15 14 13 17 17 C 1.38905 * 120.07334 * 359.67613 * 16 15 14 18 18 N 1.39926 * 120.03268 * 180.02562 * 17 16 15 19 19 C 1.34777 * 119.99634 * 324.88890 * 18 17 16 20 20 C 1.50703 * 119.99611 * 184.61794 * 19 18 17 21 21 O 1.21288 * 120.00443 * 4.61168 * 19 18 17 22 22 C 1.38758 * 120.03932 * 359.97438 * 13 3 2 23 23 H 1.09001 * 109.46889 * 299.99395 * 1 2 3 24 24 H 1.08991 * 109.47683 * 60.00259 * 1 2 3 25 25 H 1.09008 * 109.46947 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47683 * 119.99733 * 2 1 3 27 27 H 1.08998 * 109.47139 * 240.00154 * 2 1 3 28 28 H 1.09000 * 109.47418 * 209.99922 * 4 3 2 29 29 H 1.08999 * 109.47098 * 330.00179 * 4 3 2 30 30 H 0.97012 * 119.99610 * 180.02562 * 8 7 5 31 31 H 1.07996 * 119.97038 * 359.97438 * 14 13 3 32 32 H 1.08001 * 119.92964 * 180.30004 * 15 14 13 33 33 H 1.07998 * 119.96016 * 179.70142 * 16 15 14 34 34 H 0.96994 * 120.00317 * 144.88472 * 18 17 16 35 35 H 1.09001 * 109.47113 * 359.97438 * 20 19 18 36 36 H 1.09000 * 109.47426 * 119.99890 * 20 19 18 37 37 H 1.09000 * 109.46827 * 239.99685 * 20 19 18 38 38 H 1.08004 * 120.07275 * 359.97438 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 1.2687 5 6 3.6858 1.8352 1.7037 6 1 4.3428 1.2311 1.0957 7 6 4.1491 2.3898 2.8779 8 7 3.3490 3.1258 3.6180 9 14 5.9131 2.0958 3.4175 10 1 6.7851 3.1611 2.8608 11 1 5.9876 2.1196 4.9004 12 1 6.3689 0.7728 2.9201 13 6 2.2509 2.0397 -1.2096 14 6 2.7087 3.3520 -1.2105 15 6 2.9450 4.0016 -2.4064 16 6 2.7154 3.3537 -3.6053 17 6 2.2525 2.0441 -3.6112 18 7 2.0209 1.3887 -4.8256 19 6 1.5526 2.0782 -5.8848 20 6 1.2045 1.3551 -7.1604 21 8 1.4111 3.2806 -5.8114 22 6 2.0204 1.3862 -2.4117 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5137 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 2.0954 3.1412 1.1384 29 1 1.5816 1.6878 2.0284 30 1 3.6751 3.5164 4.4440 31 1 2.8842 3.8629 -0.2753 32 1 3.3053 5.0197 -2.4046 33 1 2.8966 3.8661 -4.5385 34 1 2.1974 0.4383 -4.9052 35 1 1.3964 0.2891 -7.0377 36 1 0.1505 1.5108 -7.3904 37 1 1.8154 1.7424 -7.9758 38 1 1.6612 0.3677 -2.4139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034109852.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:00:18 Heat of formation + Delta-G solvation = -25.971367 kcal Electronic energy + Delta-G solvation = -19451.577650 eV Core-core repulsion = 16486.089386 eV Total energy + Delta-G solvation = -2965.488264 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.40610 -39.92679 -37.52738 -35.52476 -34.87655 -32.29163 -31.52471 -30.99068 -29.03163 -27.99257 -25.14113 -24.21252 -22.92274 -22.21308 -20.66045 -18.87170 -18.49261 -17.88443 -17.17104 -16.83809 -16.55718 -15.98995 -15.92395 -15.18617 -15.06922 -14.67698 -14.53305 -13.99948 -13.84995 -13.54307 -13.45754 -13.21719 -13.07745 -12.93357 -12.73361 -12.68841 -12.50908 -12.20875 -11.97768 -11.77387 -11.56646 -11.27366 -10.83993 -10.61886 -10.36688 -9.15086 -8.35223 -7.83813 -6.34997 0.47734 0.83203 1.38376 1.39744 1.49844 1.68153 2.17380 2.36469 2.63635 3.08094 3.09422 3.88887 4.03026 4.19608 4.40919 4.45458 4.48917 4.53317 4.58162 4.69120 4.71683 4.76552 4.79873 4.98025 5.05259 5.11513 5.13400 5.21167 5.37848 5.43228 5.50780 5.58557 5.70058 5.81330 6.09548 6.14774 6.51123 6.56711 6.85051 6.93065 7.23693 7.36810 8.85431 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.026271 B = 0.004860 C = 0.004450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.572353 B = 5760.167917 C = 6290.203254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.116 3.884 3 N -0.619 5.619 4 C 0.268 3.732 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.012 3.988 8 N -0.927 5.927 9 Si 0.961 3.039 10 H -0.277 1.277 11 H -0.279 1.279 12 H -0.267 1.267 13 C 0.235 3.765 14 C -0.226 4.226 15 C -0.063 4.063 16 C -0.204 4.204 17 C 0.181 3.819 18 N -0.659 5.659 19 C 0.500 3.500 20 C -0.157 4.157 21 O -0.579 6.579 22 C -0.231 4.231 23 H 0.036 0.964 24 H 0.052 0.948 25 H 0.089 0.911 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.009 0.991 29 H 0.010 0.990 30 H 0.266 0.734 31 H 0.101 0.899 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.427 0.573 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.842 -8.996 -17.685 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.007 4.007 3 N -0.325 5.325 4 C 0.146 3.854 5 C -0.578 4.578 6 H 0.070 0.930 7 C -0.187 4.187 8 N -0.567 5.567 9 Si 0.786 3.214 10 H -0.203 1.203 11 H -0.204 1.204 12 H -0.191 1.191 13 C 0.129 3.871 14 C -0.249 4.249 15 C -0.082 4.082 16 C -0.227 4.227 17 C 0.086 3.914 18 N -0.306 5.306 19 C 0.291 3.709 20 C -0.216 4.216 21 O -0.458 6.458 22 C -0.256 4.256 23 H 0.055 0.945 24 H 0.071 0.929 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.266 0.734 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.032 -8.216 -17.332 19.600 hybrid contribution 0.971 0.059 1.059 1.438 sum -3.061 -8.157 -16.273 18.459 Atomic orbital electron populations 1.22126 0.95572 1.02761 1.01208 1.21450 0.94467 0.82185 1.02548 1.47038 1.68804 1.13495 1.03179 1.18750 0.94652 0.91681 0.80282 1.21797 0.97959 1.31702 1.06378 0.92994 1.25770 1.01866 0.94654 0.96386 1.70048 1.37496 1.34346 1.14849 0.85512 0.79763 0.78761 0.77378 1.20264 1.20439 1.19146 1.17822 0.91726 0.91187 0.86336 1.20819 1.10188 0.95487 0.98395 1.20866 0.96682 0.99486 0.91205 1.20870 1.07931 0.95877 0.97982 1.17427 0.96004 0.92570 0.85393 1.43624 1.64310 1.13767 1.08871 1.22002 0.74873 0.87667 0.86336 1.21886 1.05263 1.02445 0.92007 1.90725 1.54128 1.17145 1.83833 1.20335 1.14106 1.02178 0.89030 0.94502 0.92854 0.89259 0.91889 0.89467 0.97354 0.97189 0.92481 0.88107 0.85358 0.85886 0.73352 0.87077 0.87607 0.87458 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.47 10.24 71.98 0.74 -3.73 16 2 C 0.12 3.87 5.88 86.38 0.51 4.38 16 3 N -0.62 -26.35 2.59 -701.69 -1.82 -28.16 16 4 C 0.27 13.97 4.92 85.64 0.42 14.39 16 5 C -0.54 -30.08 9.39 25.60 0.24 -29.84 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.69 5.46 84.65 0.46 1.15 16 8 N -0.93 -54.61 13.29 21.45 0.28 -54.32 16 9 Si 0.96 44.03 29.54 68.60 2.03 46.05 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 13 C 0.24 9.62 6.55 38.20 0.25 9.87 16 14 C -0.23 -9.82 9.21 22.42 0.21 -9.62 16 15 C -0.06 -2.41 10.03 22.23 0.22 -2.19 16 16 C -0.20 -7.33 8.69 22.42 0.19 -7.13 16 17 C 0.18 5.70 6.29 38.13 0.24 5.94 16 18 N -0.66 -14.29 5.33 -303.56 -1.62 -15.91 16 19 C 0.50 11.21 7.78 87.66 0.68 11.89 16 20 C -0.16 -1.54 10.39 71.24 0.74 -0.80 16 21 O -0.58 -19.23 14.53 -3.05 -0.04 -19.27 16 22 C -0.23 -7.59 9.12 22.52 0.21 -7.38 16 23 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 26 H 0.06 2.23 8.07 -2.39 -0.02 2.21 16 27 H 0.09 2.41 6.19 -2.39 -0.01 2.39 16 28 H 0.01 0.48 6.18 -2.39 -0.01 0.47 16 29 H 0.01 0.56 8.07 -2.39 -0.02 0.54 16 30 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 31 H 0.10 4.96 6.13 -2.91 -0.02 4.94 16 32 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 33 H 0.12 4.45 6.22 -2.91 -0.02 4.43 16 34 H 0.43 5.55 8.66 -92.71 -0.80 4.75 16 35 H 0.11 0.34 7.92 -2.39 -0.02 0.33 16 36 H 0.11 0.92 8.14 -2.39 -0.02 0.91 16 37 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.15 3.84 6.14 -2.91 -0.02 3.82 16 Total: -1.00 -72.08 319.03 4.20 -67.88 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.26 Total: 16.80 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 5.11 Total: -13.05 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -3.15 Total: -98.40 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.04 Total: -19.27 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -72.08 4.20 -67.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034109852.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.907 kcal (2) G-P(sol) polarization free energy of solvation -72.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds