Wall clock time and date at job start Mon Mar 30 2020 06:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47106 * 2 1 4 4 N 1.46498 * 109.47246 * 120.00163 * 2 1 3 5 5 C 1.46504 * 120.00026 * 87.03297 * 4 2 1 6 6 C 1.50699 * 109.47182 * 89.99496 * 5 4 2 7 7 H 1.08000 * 119.99885 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99707 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00226 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99540 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47214 * 90.00139 * 10 8 6 12 12 H 1.48503 * 109.46958 * 210.00075 * 10 8 6 13 13 H 1.48499 * 109.47643 * 330.00112 * 10 8 6 14 14 C 1.34769 * 120.00045 * 267.03079 * 4 2 1 15 15 O 1.21551 * 120.00223 * 221.64399 * 14 4 2 16 16 C 1.47869 * 120.00216 * 41.64122 * 14 4 2 17 17 C 1.39610 * 120.10460 * 337.04974 * 16 14 4 18 18 C 1.37990 * 120.00078 * 179.69369 * 17 16 14 19 19 C 1.38242 * 120.22645 * 0.59930 * 18 17 16 20 20 C 1.38980 * 120.22013 * 359.67767 * 19 18 17 21 21 N 1.39713 * 120.00350 * 180.02562 * 20 19 18 22 22 C 1.38675 * 119.99150 * 0.02562 * 20 19 18 23 23 H 1.08993 * 109.47020 * 301.40504 * 1 2 3 24 24 H 1.08998 * 109.47555 * 61.40534 * 1 2 3 25 25 H 1.09001 * 109.47013 * 181.40671 * 1 2 3 26 26 H 1.09010 * 109.46961 * 240.00467 * 2 1 3 27 27 H 1.09002 * 109.47012 * 223.05011 * 3 2 1 28 28 H 1.09002 * 109.47238 * 343.04577 * 3 2 1 29 29 H 1.08996 * 109.47174 * 103.05115 * 3 2 1 30 30 H 1.09004 * 109.46645 * 330.00084 * 5 4 2 31 31 H 1.08999 * 109.46967 * 210.00224 * 5 4 2 32 32 H 0.96995 * 119.99774 * 180.02562 * 9 8 6 33 33 H 1.08002 * 120.00467 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.88665 * 180.27775 * 18 17 16 35 35 H 1.08003 * 119.89017 * 179.69924 * 19 18 17 36 36 H 0.96998 * 119.99931 * 180.02562 * 21 20 19 37 37 H 0.96997 * 120.00171 * 0.02562 * 21 20 19 38 38 H 1.08005 * 120.11201 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.2006 -2.1442 1.1796 6 6 3.6008 -2.4698 0.7274 7 1 4.2865 -1.6736 0.4778 8 6 4.0068 -3.7841 0.6335 9 7 3.1720 -4.7536 0.9380 10 14 5.7426 -4.1877 0.0737 11 1 6.6407 -4.2543 1.2545 12 1 5.7454 -5.4981 -0.6249 13 1 6.2219 -3.1314 -0.8536 14 6 2.3000 0.0112 2.3117 15 8 3.2935 -0.2520 2.9607 16 6 1.4005 1.1014 2.7462 17 6 0.5641 1.7296 1.8215 18 6 -0.2790 2.7425 2.2305 19 6 -0.2905 3.1473 3.5523 20 6 0.5423 2.5323 4.4795 21 7 0.5267 2.9446 5.8143 22 6 1.3889 1.5093 4.0796 23 1 -0.3633 0.5355 0.8771 24 1 -0.3634 0.4918 -0.9023 25 1 -0.3633 -1.0274 0.0252 26 1 1.8933 -0.5138 -0.8901 27 1 2.8691 1.5347 -0.7015 28 1 1.2343 2.1127 -0.2997 29 1 2.3799 1.7077 1.0011 30 1 1.4834 -2.5925 0.4920 31 1 2.0406 -2.5418 2.1818 32 1 3.4577 -5.6782 0.8723 33 1 0.5737 1.4198 0.7869 34 1 -0.9285 3.2242 1.5146 35 1 -0.9491 3.9439 3.8656 36 1 1.1082 2.5156 6.4613 37 1 -0.0657 3.6599 6.0941 38 1 2.0366 1.0297 4.7986 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036798179.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:56 Heat of formation + Delta-G solvation = 74.918713 kcal Electronic energy + Delta-G solvation = -20204.314168 eV Core-core repulsion = 17243.200827 eV Total energy + Delta-G solvation = -2961.113341 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74560 -38.12505 -36.58633 -34.33865 -32.97692 -31.33370 -30.81178 -28.33994 -27.29667 -26.69652 -23.82758 -22.46296 -22.09423 -21.38904 -18.38716 -17.23839 -16.79056 -16.41951 -16.14990 -15.34524 -15.20763 -14.56697 -14.23078 -13.72978 -13.54482 -13.43114 -13.20239 -13.02447 -12.47109 -12.18736 -11.97486 -11.79537 -11.39403 -11.10263 -11.05613 -10.88109 -10.74438 -10.54941 -10.20728 -10.02188 -9.58303 -9.48971 -9.03447 -8.69122 -8.36010 -7.44669 -7.34356 -5.96187 -3.99708 1.23996 1.74461 3.29215 3.37314 3.42992 3.46749 3.78756 4.06129 4.19680 4.52546 4.96859 5.04868 5.17663 5.25370 5.31642 5.37048 5.38315 5.68538 5.76734 5.83126 5.93088 5.98138 6.01198 6.10471 6.30322 6.39273 6.47101 6.61613 6.70027 6.74607 6.92778 7.17362 7.39650 7.51796 7.74368 7.75291 8.01455 8.31518 8.51434 8.90237 9.08338 9.64890 11.11091 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028135 B = 0.005631 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.947300 B = 4971.192671 C = 5480.276938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.142 3.858 3 C -0.181 4.181 4 N -0.624 5.624 5 C 0.257 3.743 6 C -0.517 4.517 7 H 0.060 0.940 8 C 0.058 3.942 9 N -0.901 5.901 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.566 3.434 15 O -0.507 6.507 16 C -0.087 4.087 17 C -0.205 4.205 18 C -0.096 4.096 19 C -0.184 4.184 20 C 0.196 3.804 21 N -0.883 5.883 22 C -0.143 4.143 23 H 0.097 0.903 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.029 0.971 32 H 0.262 0.738 33 H 0.207 0.793 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.397 0.603 37 H 0.395 0.605 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.484 15.890 2.265 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C 0.037 3.963 3 C -0.238 4.238 4 N -0.358 5.358 5 C 0.138 3.862 6 C -0.556 4.556 7 H 0.078 0.922 8 C -0.143 4.143 9 N -0.540 5.540 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.354 3.646 15 O -0.381 6.381 16 C -0.091 4.091 17 C -0.223 4.223 18 C -0.114 4.114 19 C -0.207 4.207 20 C 0.093 3.907 21 N -0.423 5.423 22 C -0.166 4.166 23 H 0.115 0.885 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.222 0.778 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.225 0.775 37 H 0.222 0.778 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.931 15.492 2.576 18.067 hybrid contribution 0.841 -0.238 0.214 0.900 sum -8.091 15.254 2.790 17.491 Atomic orbital electron populations 1.23299 0.96808 1.03909 1.03250 1.20958 0.92878 0.92480 0.89962 1.22987 1.01109 0.95963 1.03729 1.47819 1.68249 1.09662 1.10094 1.19195 0.96811 0.72399 0.97814 1.21543 0.97996 0.91953 1.44090 0.92154 1.24950 0.97560 0.96216 0.95614 1.69929 1.35212 0.99542 1.49367 0.86511 0.84807 0.77416 0.78751 1.20664 1.21322 1.19943 1.18130 0.83943 0.81153 0.81379 1.90718 1.24502 1.65892 1.57034 1.20313 0.97741 0.97240 0.93830 1.24018 0.95937 0.97357 1.05013 1.20831 0.98500 0.97117 0.95002 1.20661 1.02847 1.03496 0.93690 1.17614 0.94528 0.93534 0.85030 1.42392 1.49276 1.43828 1.06799 1.20693 1.01168 0.98553 0.96216 0.88504 0.91955 0.91636 0.89011 0.92470 0.90986 0.90461 0.94656 0.95281 0.92883 0.77773 0.86088 0.86669 0.77471 0.77766 0.85498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.99 8.59 37.16 0.32 -2.67 16 2 C 0.14 2.42 3.13 -67.93 -0.21 2.20 16 3 C -0.18 -2.64 7.92 37.16 0.29 -2.34 16 4 N -0.62 -13.67 2.42 -168.56 -0.41 -14.08 16 5 C 0.26 6.78 5.19 -5.19 -0.03 6.75 16 6 C -0.52 -15.01 9.25 -34.44 -0.32 -15.33 16 7 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.90 -27.02 13.29 55.43 0.74 -26.29 16 10 Si 0.90 22.47 29.54 -169.99 -5.02 17.45 16 11 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 14 C 0.57 12.57 5.64 -12.32 -0.07 12.50 16 15 O -0.51 -13.30 16.91 5.32 0.09 -13.21 16 16 C -0.09 -1.54 5.11 -104.99 -0.54 -2.08 16 17 C -0.21 -2.95 4.51 -39.16 -0.18 -3.13 16 18 C -0.10 -1.15 10.02 -39.67 -0.40 -1.55 16 19 C -0.18 -2.18 9.89 -39.30 -0.39 -2.57 16 20 C 0.20 2.58 6.75 -83.83 -0.57 2.01 16 21 N -0.88 -8.50 9.09 32.39 0.29 -8.21 16 22 C -0.14 -2.33 9.43 -38.97 -0.37 -2.70 16 23 H 0.10 1.32 4.12 -53.80 -0.22 1.10 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.09 1.63 8.10 -51.92 -0.42 1.21 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.80 6.55 -51.93 -0.34 0.46 16 29 H 0.08 1.28 4.07 -51.93 -0.21 1.07 16 30 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 31 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.21 2.74 0.64 -100.01 -0.06 2.68 16 34 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 35 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.40 3.43 8.84 -40.82 -0.36 3.07 16 37 H 0.39 2.81 8.84 -40.82 -0.36 2.45 16 38 H 0.13 2.14 7.82 -52.48 -0.41 1.73 16 LS Contribution 305.18 15.07 4.60 4.60 Total: -1.00 -33.84 305.18 -7.14 -40.98 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -4.88 Total: 6.07 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: -2.54 Total: -7.32 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.62 Total: -48.57 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.09 Total: -13.21 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.84 -7.14 -40.98 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036798179.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.900 kcal (2) G-P(sol) polarization free energy of solvation -33.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds