Wall clock time and date at job start Mon Mar 30 2020 06:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47106 * 2 1 4 4 N 1.46498 * 109.47246 * 120.00163 * 2 1 3 5 5 C 1.46504 * 120.00026 * 87.03297 * 4 2 1 6 6 C 1.50699 * 109.47182 * 89.99496 * 5 4 2 7 7 H 1.08000 * 119.99885 * 0.02562 * 6 5 4 8 8 C 1.37882 * 119.99707 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00226 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99540 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47214 * 90.00139 * 10 8 6 12 12 H 1.48503 * 109.46958 * 210.00075 * 10 8 6 13 13 H 1.48499 * 109.47643 * 330.00112 * 10 8 6 14 14 C 1.34769 * 120.00045 * 267.03079 * 4 2 1 15 15 O 1.21551 * 120.00223 * 221.64399 * 14 4 2 16 16 C 1.47869 * 120.00216 * 41.64122 * 14 4 2 17 17 C 1.39610 * 120.10460 * 337.04974 * 16 14 4 18 18 C 1.37990 * 120.00078 * 179.69369 * 17 16 14 19 19 C 1.38242 * 120.22645 * 0.59930 * 18 17 16 20 20 C 1.38980 * 120.22013 * 359.67767 * 19 18 17 21 21 N 1.39713 * 120.00350 * 180.02562 * 20 19 18 22 22 C 1.38675 * 119.99150 * 0.02562 * 20 19 18 23 23 H 1.08993 * 109.47020 * 301.40504 * 1 2 3 24 24 H 1.08998 * 109.47555 * 61.40534 * 1 2 3 25 25 H 1.09001 * 109.47013 * 181.40671 * 1 2 3 26 26 H 1.09010 * 109.46961 * 240.00467 * 2 1 3 27 27 H 1.09002 * 109.47012 * 223.05011 * 3 2 1 28 28 H 1.09002 * 109.47238 * 343.04577 * 3 2 1 29 29 H 1.08996 * 109.47174 * 103.05115 * 3 2 1 30 30 H 1.09004 * 109.46645 * 330.00084 * 5 4 2 31 31 H 1.08999 * 109.46967 * 210.00224 * 5 4 2 32 32 H 0.96995 * 119.99774 * 180.02562 * 9 8 6 33 33 H 1.08002 * 120.00467 * 359.97438 * 17 16 14 34 34 H 1.08002 * 119.88665 * 180.27775 * 18 17 16 35 35 H 1.08003 * 119.89017 * 179.69924 * 19 18 17 36 36 H 0.96998 * 119.99931 * 180.02562 * 21 20 19 37 37 H 0.96997 * 120.00171 * 0.02562 * 21 20 19 38 38 H 1.08005 * 120.11201 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.2006 -2.1442 1.1796 6 6 3.6008 -2.4698 0.7274 7 1 4.2865 -1.6736 0.4778 8 6 4.0068 -3.7841 0.6335 9 7 3.1720 -4.7536 0.9380 10 14 5.7426 -4.1877 0.0737 11 1 6.6407 -4.2543 1.2545 12 1 5.7454 -5.4981 -0.6249 13 1 6.2219 -3.1314 -0.8536 14 6 2.3000 0.0112 2.3117 15 8 3.2935 -0.2520 2.9607 16 6 1.4005 1.1014 2.7462 17 6 0.5641 1.7296 1.8215 18 6 -0.2790 2.7425 2.2305 19 6 -0.2905 3.1473 3.5523 20 6 0.5423 2.5323 4.4795 21 7 0.5267 2.9446 5.8143 22 6 1.3889 1.5093 4.0796 23 1 -0.3633 0.5355 0.8771 24 1 -0.3634 0.4918 -0.9023 25 1 -0.3633 -1.0274 0.0252 26 1 1.8933 -0.5138 -0.8901 27 1 2.8691 1.5347 -0.7015 28 1 1.2343 2.1127 -0.2997 29 1 2.3799 1.7077 1.0011 30 1 1.4834 -2.5925 0.4920 31 1 2.0406 -2.5418 2.1818 32 1 3.4577 -5.6782 0.8723 33 1 0.5737 1.4198 0.7869 34 1 -0.9285 3.2242 1.5146 35 1 -0.9491 3.9439 3.8656 36 1 1.1082 2.5156 6.4613 37 1 -0.0657 3.6599 6.0941 38 1 2.0366 1.0297 4.7986 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036798179.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:56 Heat of formation + Delta-G solvation = 50.981896 kcal Electronic energy + Delta-G solvation = -20205.352146 eV Core-core repulsion = 17243.200827 eV Total energy + Delta-G solvation = -2962.151320 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.12280 -39.40150 -38.13641 -35.77448 -34.74055 -33.05973 -31.99654 -29.49226 -29.02765 -28.07893 -25.47816 -24.02609 -23.47784 -22.62991 -19.74619 -18.75538 -18.42288 -17.78619 -17.45551 -16.91599 -16.75321 -16.12598 -15.94329 -14.97034 -14.82300 -14.67129 -14.52675 -14.22649 -14.09612 -13.74419 -13.49410 -13.20765 -13.11080 -12.78291 -12.64998 -12.47463 -12.23101 -12.07199 -12.01526 -11.69210 -11.18742 -10.80917 -10.62135 -10.60927 -9.85168 -9.23578 -8.32762 -8.19627 -6.34699 0.02173 0.70111 1.34292 1.37757 1.47750 1.79080 2.28153 2.43892 3.02057 3.06570 3.07313 3.66038 3.93275 4.04631 4.12535 4.14298 4.32022 4.58627 4.64094 4.72338 4.80384 4.90206 4.91554 5.02160 5.07153 5.09138 5.14058 5.26231 5.36653 5.48709 5.61819 5.64110 5.64525 5.95607 6.00397 6.08763 6.59556 6.72696 6.83245 7.04421 7.19575 7.37702 8.84937 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.028135 B = 0.005631 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.947300 B = 4971.192671 C = 5480.276938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.129 3.871 3 C -0.176 4.176 4 N -0.630 5.630 5 C 0.272 3.728 6 C -0.536 4.536 7 H 0.045 0.955 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.964 3.036 11 H -0.282 1.282 12 H -0.270 1.270 13 H -0.266 1.266 14 C 0.560 3.440 15 O -0.571 6.571 16 C -0.113 4.113 17 C -0.204 4.204 18 C -0.083 4.083 19 C -0.172 4.172 20 C 0.198 3.802 21 N -0.870 5.870 22 C -0.172 4.172 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.045 0.955 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.120 0.880 29 H 0.057 0.943 30 H 0.031 0.969 31 H -0.013 1.013 32 H 0.267 0.733 33 H 0.215 0.785 34 H 0.167 0.833 35 H 0.154 0.846 36 H 0.401 0.599 37 H 0.411 0.589 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.476 18.811 1.123 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.026 3.974 3 C -0.232 4.232 4 N -0.364 5.364 5 C 0.151 3.849 6 C -0.575 4.575 7 H 0.063 0.937 8 C -0.190 4.190 9 N -0.569 5.569 10 Si 0.789 3.211 11 H -0.208 1.208 12 H -0.195 1.195 13 H -0.191 1.191 14 C 0.352 3.648 15 O -0.450 6.450 16 C -0.117 4.117 17 C -0.222 4.222 18 C -0.102 4.102 19 C -0.195 4.195 20 C 0.093 3.907 21 N -0.411 5.411 22 C -0.196 4.196 23 H 0.124 0.876 24 H 0.125 0.875 25 H 0.064 0.936 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.138 0.862 29 H 0.075 0.925 30 H 0.049 0.951 31 H 0.005 0.995 32 H 0.076 0.924 33 H 0.231 0.769 34 H 0.185 0.815 35 H 0.172 0.828 36 H 0.229 0.771 37 H 0.241 0.759 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.969 18.460 1.429 21.521 hybrid contribution 1.392 -1.080 0.635 1.873 sum -9.577 17.380 2.065 19.952 Atomic orbital electron populations 1.23217 0.93726 1.03494 1.05809 1.21333 0.95412 0.93447 0.87173 1.22969 1.02766 0.94766 1.02695 1.47844 1.68446 1.08012 1.12124 1.18681 0.95660 0.75644 0.94896 1.21742 0.98987 0.92059 1.44729 0.93675 1.25811 1.01848 0.95958 0.95432 1.70029 1.37135 0.99997 1.49740 0.85473 0.79387 0.77953 0.78325 1.20849 1.19504 1.19079 1.18987 0.83691 0.81748 0.80420 1.90657 1.27365 1.68455 1.58566 1.19949 0.98991 0.97433 0.95302 1.24078 0.95618 0.97812 1.04680 1.21326 0.97405 0.95447 0.95982 1.21167 1.01787 1.03253 0.93279 1.17689 0.93797 0.92464 0.86723 1.42373 1.49262 1.43855 1.05653 1.20617 1.02818 1.00563 0.95572 0.87647 0.87524 0.93559 0.90417 0.92469 0.86195 0.92463 0.95063 0.99487 0.92398 0.76937 0.81527 0.82793 0.77059 0.75856 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.27 8.59 71.98 0.62 -4.66 16 2 C 0.13 4.40 3.13 44.99 0.14 4.54 16 3 C -0.18 -4.84 7.92 71.98 0.57 -4.27 16 4 N -0.63 -29.23 2.42 -805.49 -1.95 -31.18 16 5 C 0.27 15.41 5.19 85.63 0.44 15.86 16 6 C -0.54 -32.84 9.25 25.60 0.24 -32.60 16 7 H 0.04 2.83 7.81 -2.91 -0.02 2.81 16 8 C 0.01 0.48 5.46 84.66 0.46 0.95 16 9 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 10 Si 0.96 47.18 29.54 68.60 2.03 49.21 16 11 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 13 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 14 C 0.56 26.61 5.64 86.79 0.49 27.10 16 15 O -0.57 -32.76 16.91 -3.87 -0.07 -32.82 16 16 C -0.11 -4.09 5.11 -20.10 -0.10 -4.19 16 17 C -0.20 -5.35 4.51 22.54 0.10 -5.25 16 18 C -0.08 -1.57 10.02 22.21 0.22 -1.35 16 19 C -0.17 -3.26 9.89 22.45 0.22 -3.04 16 20 C 0.20 4.81 6.75 38.17 0.26 5.06 16 21 N -0.87 -14.85 9.09 -51.45 -0.47 -15.32 16 22 C -0.17 -5.77 9.43 22.67 0.21 -5.56 16 23 H 0.11 2.57 4.12 -4.14 -0.02 2.55 16 24 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.08 2.82 8.10 -2.38 -0.02 2.80 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.12 2.13 6.55 -2.39 -0.02 2.11 16 29 H 0.06 1.88 4.07 -2.39 -0.01 1.87 16 30 H 0.03 1.76 8.07 -2.38 -0.02 1.74 16 31 H -0.01 -0.83 8.03 -2.39 -0.02 -0.85 16 32 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 33 H 0.22 5.05 0.64 -47.55 -0.03 5.02 16 34 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.40 6.54 8.84 -92.71 -0.82 5.72 16 37 H 0.41 4.41 8.84 -92.71 -0.82 3.59 16 38 H 0.10 3.79 7.82 -2.91 -0.02 3.77 16 Total: -1.00 -80.66 305.18 3.14 -77.53 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -0.57 Total: 17.23 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: 3.88 Total: -7.41 kcal Atomic # 7 Polarization: -101.60 SS G_CDS: -2.13 Total: -103.73 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.07 Total: -32.82 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -80.66 3.14 -77.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036798179.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.508 kcal (2) G-P(sol) polarization free energy of solvation -80.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds