Wall clock time and date at job start Mon Mar 30 2020 06:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46670 * 2 1 4 4 H 1.08994 * 109.46947 * 55.75555 * 3 2 1 5 5 C 1.50699 * 109.46519 * 175.75457 * 3 2 1 6 6 H 1.08007 * 119.99974 * 120.00418 * 5 3 2 7 7 C 1.37879 * 120.00348 * 299.72507 * 5 3 2 8 8 N 1.31515 * 119.99507 * 0.27618 * 7 5 3 9 9 Si 1.86796 * 120.00158 * 180.28129 * 7 5 3 10 10 H 1.48495 * 109.47334 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47448 * 120.00051 * 9 7 5 12 12 H 1.48506 * 109.46628 * 239.99791 * 9 7 5 13 13 N 1.46498 * 109.47387 * 295.75212 * 3 2 1 14 14 C 1.39894 * 119.99778 * 153.67909 * 13 3 2 15 15 C 1.38886 * 120.00361 * 6.07949 * 14 13 3 16 16 C 1.38061 * 119.99103 * 179.71791 * 15 14 13 17 17 C 1.38854 * 120.00791 * 0.56334 * 16 15 14 18 18 N 1.40144 * 119.99776 * 179.69813 * 17 16 15 19 19 C 1.34774 * 119.99810 * 213.52822 * 18 17 16 20 20 C 1.50699 * 120.00117 * 184.95349 * 19 18 17 21 21 O 1.21293 * 120.00195 * 4.95255 * 19 18 17 22 22 C 1.38859 * 120.00363 * 359.71323 * 17 16 15 23 23 C 1.38054 * 120.00448 * 0.02562 * 22 17 16 24 24 H 1.09009 * 109.46982 * 185.08193 * 1 2 3 25 25 H 1.08996 * 109.47431 * 305.08214 * 1 2 3 26 26 H 1.09005 * 109.47441 * 65.08471 * 1 2 3 27 27 H 1.09001 * 109.47104 * 240.00556 * 2 1 3 28 28 H 1.08997 * 109.46916 * 120.00324 * 2 1 3 29 29 H 0.97005 * 119.99577 * 179.97438 * 8 7 5 30 30 H 0.97005 * 120.00101 * 333.68243 * 13 3 2 31 31 H 1.08002 * 120.00293 * 0.02562 * 15 14 13 32 32 H 1.08000 * 119.99684 * 180.25520 * 16 15 14 33 33 H 0.96998 * 120.00518 * 33.53410 * 18 17 16 34 34 H 1.09005 * 109.47500 * 89.99922 * 20 19 18 35 35 H 1.08999 * 109.47706 * 210.00101 * 20 19 18 36 36 H 1.09004 * 109.47283 * 330.00293 * 20 19 18 37 37 H 1.08002 * 119.99126 * 179.97438 * 22 17 16 38 38 H 1.08004 * 120.00128 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6158 1.9778 0.8495 5 6 3.5432 1.4438 0.1052 6 1 4.1389 1.8919 -0.6765 7 6 4.1581 0.8781 1.2020 8 7 3.4328 0.3326 2.1538 9 14 6.0212 0.8867 1.3361 10 1 6.6003 1.5554 0.1434 11 1 6.4260 1.6214 2.5614 12 1 6.5185 -0.5107 1.4098 13 7 1.6369 2.1030 -1.2440 14 6 1.4778 3.4925 -1.2784 15 6 1.8226 4.2586 -0.1725 16 6 1.6709 5.6304 -0.2089 17 6 1.1628 6.2429 -1.3467 18 7 1.0030 7.6348 -1.3811 19 6 -0.0187 8.1789 -2.0713 20 6 -0.1272 9.6764 -2.2016 21 8 -0.8510 7.4634 -2.5877 22 6 0.8126 5.4765 -2.4504 23 6 0.9692 4.1052 -2.4163 24 1 -0.3633 -1.0237 0.0910 25 1 -0.3634 0.5906 0.8409 26 1 -0.3634 0.4329 -0.9320 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8654 -0.0658 2.9252 30 1 1.4803 1.5769 -2.0438 31 1 2.2140 3.7818 0.7140 32 1 1.9429 6.2266 0.6495 33 1 1.6277 8.2066 -0.9082 34 1 0.4091 10.0034 -3.0925 35 1 -1.1766 9.9588 -2.2852 36 1 0.3076 10.1501 -1.3214 37 1 0.4170 5.9531 -3.3351 38 1 0.6964 3.5091 -3.2746 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036987046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:03 Heat of formation + Delta-G solvation = -36.619654 kcal Electronic energy + Delta-G solvation = -19299.768571 eV Core-core repulsion = 16333.818563 eV Total energy + Delta-G solvation = -2965.950008 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.27839 -39.73005 -37.64986 -35.65434 -34.14463 -32.85759 -31.73762 -30.88353 -29.01716 -27.59826 -24.97604 -23.89920 -22.82110 -21.81727 -20.88484 -18.65153 -18.50934 -18.01978 -17.69497 -16.90275 -16.36184 -15.85503 -15.30530 -14.97996 -14.92161 -14.65806 -14.31424 -14.14039 -13.93733 -13.51691 -13.34865 -13.21093 -13.08477 -13.01660 -12.80259 -12.62066 -12.21320 -11.90581 -11.80288 -11.63232 -11.55298 -11.07847 -10.77957 -10.46247 -9.93393 -9.73256 -8.19764 -7.71942 -6.24485 0.61807 0.70563 1.39147 1.42812 1.52930 1.75707 2.33490 2.41483 3.00176 3.12012 3.16648 3.92248 4.13529 4.20559 4.46322 4.53375 4.56818 4.59590 4.70141 4.72300 4.78297 4.80327 5.04897 5.10635 5.19688 5.23340 5.30832 5.34600 5.56049 5.58805 5.66698 5.71204 5.73425 5.96230 6.17537 6.30656 6.60384 6.64902 6.94897 7.24537 7.31882 7.47982 8.91647 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.025085 B = 0.004751 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.937410 B = 5892.035826 C = 6621.787549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.284 3.716 4 H 0.010 0.990 5 C -0.534 4.534 6 H 0.045 0.955 7 C 0.022 3.978 8 N -0.912 5.912 9 Si 0.951 3.049 10 H -0.275 1.275 11 H -0.280 1.280 12 H -0.280 1.280 13 N -0.730 5.730 14 C 0.211 3.789 15 C -0.192 4.192 16 C -0.090 4.090 17 C 0.056 3.944 18 N -0.655 5.655 19 C 0.496 3.504 20 C -0.159 4.159 21 O -0.588 6.588 22 C -0.078 4.078 23 C -0.201 4.201 24 H 0.055 0.945 25 H 0.034 0.966 26 H 0.050 0.950 27 H 0.040 0.960 28 H 0.077 0.923 29 H 0.263 0.737 30 H 0.392 0.608 31 H 0.110 0.890 32 H 0.142 0.858 33 H 0.424 0.576 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 14.515 -5.732 16.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C 0.181 3.819 4 H 0.027 0.973 5 C -0.573 4.573 6 H 0.063 0.937 7 C -0.178 4.178 8 N -0.552 5.552 9 Si 0.777 3.223 10 H -0.200 1.200 11 H -0.206 1.206 12 H -0.205 1.205 13 N -0.355 5.355 14 C 0.104 3.896 15 C -0.215 4.215 16 C -0.111 4.111 17 C -0.040 4.040 18 N -0.302 5.302 19 C 0.287 3.713 20 C -0.218 4.218 21 O -0.468 6.468 22 C -0.099 4.099 23 C -0.225 4.225 24 H 0.074 0.926 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.058 0.942 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.226 0.774 31 H 0.128 0.872 32 H 0.160 0.840 33 H 0.263 0.737 34 H 0.131 0.869 35 H 0.113 0.887 36 H 0.129 0.871 37 H 0.141 0.859 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.117 13.877 -5.732 15.569 hybrid contribution 1.296 -0.456 0.296 1.406 sum -2.821 13.421 -5.436 14.753 Atomic orbital electron populations 1.21675 0.96335 1.00609 1.00505 1.21695 0.94298 0.98389 1.01795 1.18397 0.92321 0.89502 0.81730 0.97273 1.21833 0.93117 1.37089 1.05296 0.93688 1.25561 1.01948 0.94921 0.95348 1.69976 1.36280 1.38982 1.09923 0.85621 0.81198 0.77695 0.77777 1.19993 1.20584 1.20545 1.45124 1.74079 1.02908 1.13437 1.18132 0.92592 0.84820 0.94007 1.20666 1.07815 0.93864 0.99175 1.20758 1.00175 0.93617 0.96531 1.17450 1.07642 0.84099 0.94768 1.43475 1.29942 1.04560 1.52208 1.21913 0.79257 0.93275 0.76850 1.21891 1.06112 0.87211 1.06544 1.90713 1.42016 1.65127 1.48934 1.20764 0.98731 0.93016 0.97392 1.20548 1.08733 0.94851 0.98352 0.92611 0.94691 0.93067 0.94156 0.90469 0.92748 0.77450 0.87235 0.84009 0.73749 0.86864 0.88668 0.87052 0.85925 0.85329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.73 71.98 0.70 -4.39 16 2 C -0.12 -5.58 5.32 30.60 0.16 -5.41 16 3 C 0.28 13.77 1.64 44.25 0.07 13.84 16 4 H 0.01 0.52 6.69 -2.39 -0.02 0.50 16 5 C -0.53 -28.49 8.45 25.60 0.22 -28.28 16 6 H 0.04 2.48 7.81 -2.91 -0.02 2.46 16 7 C 0.02 1.16 5.30 84.65 0.45 1.61 16 8 N -0.91 -50.19 11.30 21.45 0.24 -49.95 16 9 Si 0.95 42.80 29.54 68.60 2.03 44.83 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.73 -30.66 4.74 -322.37 -1.53 -32.19 16 14 C 0.21 8.60 6.64 38.17 0.25 8.85 16 15 C -0.19 -7.83 9.07 22.38 0.20 -7.63 16 16 C -0.09 -3.00 9.96 22.38 0.22 -2.77 16 17 C 0.06 1.76 6.28 38.11 0.24 2.00 16 18 N -0.65 -14.77 5.35 -303.35 -1.62 -16.39 16 19 C 0.50 11.58 7.68 87.66 0.67 12.26 16 20 C -0.16 -1.74 10.31 71.24 0.73 -1.00 16 21 O -0.59 -19.94 14.79 -3.07 -0.05 -19.99 16 22 C -0.08 -2.72 8.65 22.37 0.19 -2.52 16 23 C -0.20 -7.28 9.89 22.38 0.22 -7.06 16 24 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.79 7.88 -2.38 -0.02 1.77 16 27 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.08 3.96 5.98 -2.39 -0.01 3.94 16 29 H 0.26 13.80 8.31 -92.70 -0.77 13.03 16 30 H 0.39 14.83 8.63 -92.70 -0.80 14.03 16 31 H 0.11 5.07 6.17 -2.91 -0.02 5.06 16 32 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 33 H 0.42 6.01 8.82 -92.71 -0.82 5.19 16 34 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.12 4.23 6.41 -2.91 -0.02 4.21 16 38 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -66.56 317.63 2.88 -63.68 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: -0.54 Total: 30.51 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 4.34 Total: -20.50 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -2.91 Total: -98.53 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.05 Total: -19.99 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -66.56 2.88 -63.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036987046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.064 kcal (2) G-P(sol) polarization free energy of solvation -66.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds