Wall clock time and date at job start Mon Mar 30 2020 06:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46736 * 2 1 4 4 H 1.08992 * 109.47246 * 304.99580 * 3 2 1 5 5 C 1.50702 * 109.46753 * 184.99824 * 3 2 1 6 6 H 1.07996 * 120.00280 * 239.99700 * 5 3 2 7 7 C 1.37883 * 120.00034 * 60.00416 * 5 3 2 8 8 N 1.31513 * 119.99797 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00116 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46996 * 119.99736 * 9 7 5 12 12 H 1.48500 * 109.47050 * 240.00197 * 9 7 5 13 13 N 1.46499 * 109.46885 * 65.00244 * 3 2 1 14 14 C 1.39893 * 119.99785 * 275.27104 * 13 3 2 15 15 C 1.38888 * 120.00211 * 359.45380 * 14 13 3 16 16 C 1.38064 * 119.98975 * 179.72059 * 15 14 13 17 17 C 1.38851 * 120.00708 * 0.55279 * 16 15 14 18 18 N 1.40148 * 120.00096 * 179.70188 * 17 16 15 19 19 C 1.34774 * 120.00207 * 213.32977 * 18 17 16 20 20 C 1.50698 * 119.99924 * 185.27252 * 19 18 17 21 21 O 1.21294 * 120.00297 * 5.27436 * 19 18 17 22 22 C 1.38857 * 120.00619 * 359.72508 * 17 16 15 23 23 C 1.38058 * 120.00603 * 359.97438 * 22 17 16 24 24 H 1.09002 * 109.46824 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47363 * 299.99786 * 1 2 3 26 26 H 1.08996 * 109.47171 * 60.00180 * 1 2 3 27 27 H 1.09001 * 109.47363 * 240.00214 * 2 1 3 28 28 H 1.08996 * 109.47171 * 119.99820 * 2 1 3 29 29 H 0.96998 * 119.99921 * 180.02562 * 8 7 5 30 30 H 0.97002 * 119.99887 * 95.00401 * 13 3 2 31 31 H 1.07994 * 120.00431 * 359.97438 * 15 14 13 32 32 H 1.07999 * 119.99589 * 180.25293 * 16 15 14 33 33 H 0.97001 * 119.99527 * 33.32433 * 18 17 16 34 34 H 1.08999 * 109.47402 * 359.97438 * 20 19 18 35 35 H 1.08998 * 109.47566 * 120.00032 * 20 19 18 36 36 H 1.09003 * 109.47085 * 239.99993 * 20 19 18 37 37 H 1.08001 * 119.99656 * 179.97438 * 22 17 16 38 38 H 1.07999 * 120.00239 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0049 0.8814 -1.3818 10 1 6.5986 1.5474 -0.1947 11 1 6.4970 -0.5174 -1.4630 12 1 6.3989 1.6170 -2.6102 13 7 1.6523 2.0975 1.2518 14 6 0.3866 2.6808 1.3733 15 6 -0.4983 2.6491 0.3033 16 6 -1.7495 3.2198 0.4254 17 6 -2.1189 3.8355 1.6138 18 7 -3.3868 4.4203 1.7355 19 6 -3.5507 5.5221 2.4941 20 6 -4.9313 6.0818 2.7215 21 8 -2.5871 6.0634 2.9937 22 6 -1.2322 3.8724 2.6817 23 6 0.0168 3.2964 2.5622 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0616 -2.9495 30 1 2.2719 2.1232 1.9978 31 1 -0.2092 2.1744 -0.6227 32 1 -2.4392 3.1916 -0.4052 33 1 -4.1463 4.0320 1.2736 34 1 -5.6634 5.4672 2.1976 35 1 -5.1527 6.0806 3.7888 36 1 -4.9765 7.1027 2.3422 37 1 -1.5195 4.3517 3.6059 38 1 0.7066 3.3254 3.3926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036987047.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:06 Heat of formation + Delta-G solvation = -9.823226 kcal Electronic energy + Delta-G solvation = -19414.384044 eV Core-core repulsion = 16449.596017 eV Total energy + Delta-G solvation = -2964.788028 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.15899 -38.57247 -36.10024 -34.22253 -32.44596 -31.32787 -30.32087 -29.86752 -27.89210 -25.76263 -23.13098 -22.62347 -21.59327 -20.51674 -19.17992 -17.51089 -17.25279 -16.56498 -15.87438 -15.35612 -15.09863 -14.40237 -14.01734 -13.79323 -13.53772 -13.17047 -13.01212 -12.81496 -12.53622 -12.41408 -12.14530 -11.80504 -11.64706 -11.31594 -10.96668 -10.86245 -10.66420 -10.44332 -10.17931 -10.04025 -9.81735 -9.48691 -9.08099 -8.66796 -8.42543 -8.30286 -6.30242 -6.16700 -4.24952 1.94706 2.03630 2.79661 3.21615 3.29412 3.30081 3.33632 4.25969 4.47042 4.61959 4.74004 4.97560 5.14694 5.21339 5.39162 5.53579 5.60271 5.89673 6.03186 6.08137 6.21622 6.31240 6.43725 6.54775 6.61453 6.82859 6.91890 6.96577 7.00263 7.05644 7.22279 7.39939 7.55173 7.62348 7.68534 7.83352 8.09004 8.26832 8.38853 8.72349 8.92249 9.42207 10.88158 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.040480 B = 0.004111 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.537380 B = 6809.440180 C = 7104.370409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C 0.272 3.728 4 H 0.040 0.960 5 C -0.529 4.529 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.724 5.724 14 C 0.231 3.769 15 C -0.184 4.184 16 C -0.094 4.094 17 C 0.045 3.955 18 N -0.664 5.664 19 C 0.502 3.498 20 C -0.169 4.169 21 O -0.536 6.536 22 C -0.066 4.066 23 C -0.205 4.205 24 H 0.028 0.972 25 H 0.049 0.951 26 H 0.047 0.953 27 H 0.099 0.901 28 H 0.034 0.966 29 H 0.264 0.736 30 H 0.389 0.611 31 H 0.138 0.862 32 H 0.114 0.886 33 H 0.403 0.597 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.511 4.572 5.728 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.172 4.172 3 C 0.170 3.830 4 H 0.058 0.942 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.346 5.346 14 C 0.121 3.879 15 C -0.207 4.207 16 C -0.115 4.115 17 C -0.049 4.049 18 N -0.309 5.309 19 C 0.289 3.711 20 C -0.228 4.228 21 O -0.413 6.413 22 C -0.087 4.087 23 C -0.229 4.229 24 H 0.047 0.953 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.117 0.883 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.222 0.778 31 H 0.155 0.845 32 H 0.132 0.868 33 H 0.238 0.762 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.140 0.860 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.745 4.771 5.717 15.632 hybrid contribution 0.805 -0.281 -0.162 0.868 sum -12.940 4.490 5.555 14.780 Atomic orbital electron populations 1.22204 0.99010 0.99103 1.00568 1.22027 0.92218 1.00403 1.02539 1.18738 0.94489 0.88718 0.81095 0.94249 1.21276 0.90888 1.38456 1.06141 0.92076 1.24874 0.98653 0.94776 0.95394 1.69874 1.35053 1.37979 1.09444 0.86405 0.84896 0.77761 0.78151 1.19747 1.20881 1.20864 1.45590 1.11963 1.59214 1.17858 1.18058 0.86584 0.90281 0.92966 1.20877 0.93683 1.06369 0.99792 1.20523 0.96534 0.99566 0.94882 1.17319 0.87123 1.05084 0.95348 1.43491 1.09706 1.27971 1.49747 1.20860 0.91806 0.79750 0.78649 1.21832 0.93463 1.02952 1.04592 1.90738 1.42091 1.59095 1.49338 1.20626 0.93183 0.97590 0.97293 1.20407 0.97873 1.07010 0.97601 0.95297 0.93185 0.93443 0.88304 0.94725 0.92649 0.77751 0.84468 0.86756 0.76205 0.90639 0.88780 0.88823 0.86047 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.22 37.16 0.31 -2.67 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.48 2.20 -69.08 -0.15 6.33 16 4 H 0.04 1.03 6.47 -51.93 -0.34 0.70 16 5 C -0.53 -13.83 8.73 -34.44 -0.30 -14.13 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -23.96 11.29 55.43 0.63 -23.33 16 9 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.72 -15.06 5.19 -53.24 -0.28 -15.34 16 14 C 0.23 4.46 5.47 -83.70 -0.46 4.00 16 15 C -0.18 -3.40 6.71 -39.40 -0.26 -3.67 16 16 C -0.09 -1.50 9.95 -39.42 -0.39 -1.89 16 17 C 0.05 0.72 6.28 -83.60 -0.53 0.19 16 18 N -0.66 -7.98 5.35 -9.82 -0.05 -8.03 16 19 C 0.50 6.28 7.68 -10.99 -0.08 6.20 16 20 C -0.17 -1.20 10.39 36.00 0.37 -0.82 16 21 O -0.54 -9.28 14.79 5.55 0.08 -9.20 16 22 C -0.07 -1.15 8.65 -39.42 -0.34 -1.49 16 23 C -0.20 -3.66 9.89 -39.41 -0.39 -4.05 16 24 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.96 5.38 -51.93 -0.28 0.68 16 26 H 0.05 0.91 6.36 -51.93 -0.33 0.58 16 27 H 0.10 2.51 5.95 -51.93 -0.31 2.20 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 30 H 0.39 7.68 8.55 -40.82 -0.35 7.33 16 31 H 0.14 2.69 4.03 -52.49 -0.21 2.48 16 32 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.40 3.31 8.66 -40.82 -0.35 2.96 16 34 H 0.07 0.33 7.92 -51.93 -0.41 -0.08 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.12 2.10 6.41 -52.49 -0.34 1.76 16 38 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 306.86 15.07 4.62 4.62 Total: -1.00 -30.08 306.86 -7.48 -37.56 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -4.99 Total: 11.72 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -2.47 Total: -13.53 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: 0.30 Total: -46.70 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.08 Total: -9.20 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.08 -7.48 -37.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036987047.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.742 kcal (2) G-P(sol) polarization free energy of solvation -30.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds