Wall clock time and date at job start Mon Mar 30 2020 06:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46736 * 2 1 4 4 H 1.08992 * 109.47246 * 304.99580 * 3 2 1 5 5 C 1.50702 * 109.46753 * 184.99824 * 3 2 1 6 6 H 1.07996 * 120.00280 * 239.99700 * 5 3 2 7 7 C 1.37883 * 120.00034 * 60.00416 * 5 3 2 8 8 N 1.31513 * 119.99797 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 120.00116 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47001 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.46996 * 119.99736 * 9 7 5 12 12 H 1.48500 * 109.47050 * 240.00197 * 9 7 5 13 13 N 1.46499 * 109.46885 * 65.00244 * 3 2 1 14 14 C 1.39893 * 119.99785 * 275.27104 * 13 3 2 15 15 C 1.38888 * 120.00211 * 359.45380 * 14 13 3 16 16 C 1.38064 * 119.98975 * 179.72059 * 15 14 13 17 17 C 1.38851 * 120.00708 * 0.55279 * 16 15 14 18 18 N 1.40148 * 120.00096 * 179.70188 * 17 16 15 19 19 C 1.34774 * 120.00207 * 213.32977 * 18 17 16 20 20 C 1.50698 * 119.99924 * 185.27252 * 19 18 17 21 21 O 1.21294 * 120.00297 * 5.27436 * 19 18 17 22 22 C 1.38857 * 120.00619 * 359.72508 * 17 16 15 23 23 C 1.38058 * 120.00603 * 359.97438 * 22 17 16 24 24 H 1.09002 * 109.46824 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47363 * 299.99786 * 1 2 3 26 26 H 1.08996 * 109.47171 * 60.00180 * 1 2 3 27 27 H 1.09001 * 109.47363 * 240.00214 * 2 1 3 28 28 H 1.08996 * 109.47171 * 119.99820 * 2 1 3 29 29 H 0.96998 * 119.99921 * 180.02562 * 8 7 5 30 30 H 0.97002 * 119.99887 * 95.00401 * 13 3 2 31 31 H 1.07994 * 120.00431 * 359.97438 * 15 14 13 32 32 H 1.07999 * 119.99589 * 180.25293 * 16 15 14 33 33 H 0.97001 * 119.99527 * 33.32433 * 18 17 16 34 34 H 1.08999 * 109.47402 * 359.97438 * 20 19 18 35 35 H 1.08998 * 109.47566 * 120.00032 * 20 19 18 36 36 H 1.09003 * 109.47085 * 239.99993 * 20 19 18 37 37 H 1.08001 * 119.99656 * 179.97438 * 22 17 16 38 38 H 1.07999 * 120.00239 * 179.97438 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6523 7 6 4.1432 0.8785 -1.2280 8 7 3.4062 0.3368 -2.1729 9 14 6.0049 0.8814 -1.3818 10 1 6.5986 1.5474 -0.1947 11 1 6.4970 -0.5174 -1.4630 12 1 6.3989 1.6170 -2.6102 13 7 1.6523 2.0975 1.2518 14 6 0.3866 2.6808 1.3733 15 6 -0.4983 2.6491 0.3033 16 6 -1.7495 3.2198 0.4254 17 6 -2.1189 3.8355 1.6138 18 7 -3.3868 4.4203 1.7355 19 6 -3.5507 5.5221 2.4941 20 6 -4.9313 6.0818 2.7215 21 8 -2.5871 6.0634 2.9937 22 6 -1.2322 3.8724 2.6817 23 6 0.0168 3.2964 2.5622 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.8293 -0.0616 -2.9495 30 1 2.2719 2.1232 1.9978 31 1 -0.2092 2.1744 -0.6227 32 1 -2.4392 3.1916 -0.4052 33 1 -4.1463 4.0320 1.2736 34 1 -5.6634 5.4672 2.1976 35 1 -5.1527 6.0806 3.7888 36 1 -4.9765 7.1027 2.3422 37 1 -1.5195 4.3517 3.6059 38 1 0.7066 3.3254 3.3926 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036987047.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:05 Heat of formation + Delta-G solvation = -29.287884 kcal Electronic energy + Delta-G solvation = -19415.228095 eV Core-core repulsion = 16449.596017 eV Total energy + Delta-G solvation = -2965.632079 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33094 -39.93805 -37.63454 -35.60547 -34.17009 -32.91673 -31.55784 -31.02323 -29.37652 -27.36263 -24.85932 -24.09813 -22.90848 -21.85353 -20.70512 -19.00664 -18.64860 -17.66728 -17.49332 -16.98354 -16.34708 -16.03154 -15.37694 -15.23743 -14.83896 -14.66822 -14.41648 -14.04893 -13.77612 -13.58030 -13.41691 -13.15710 -13.11121 -12.94367 -12.72807 -12.63048 -12.15923 -12.00293 -11.96478 -11.64752 -11.29609 -10.95277 -10.84631 -10.47286 -9.94899 -9.70342 -8.18255 -7.77808 -6.31587 0.60624 0.68600 1.40153 1.42749 1.53241 1.75051 2.33198 2.38053 2.99629 3.09003 3.13317 3.92377 4.11135 4.17334 4.47852 4.52427 4.59940 4.64948 4.69889 4.71895 4.77494 4.80549 5.03948 5.11356 5.20476 5.23894 5.33125 5.43206 5.51659 5.61218 5.63054 5.68723 5.72143 5.90936 6.16944 6.21041 6.58290 6.64703 6.89863 7.23553 7.32194 7.40708 8.87261 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.040480 B = 0.004111 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.537380 B = 6809.440180 C = 7104.370409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.283 3.717 4 H 0.011 0.989 5 C -0.549 4.549 6 H 0.057 0.943 7 C 0.021 3.979 8 N -0.909 5.909 9 Si 0.961 3.039 10 H -0.270 1.270 11 H -0.278 1.278 12 H -0.281 1.281 13 N -0.732 5.732 14 C 0.207 3.793 15 C -0.195 4.195 16 C -0.089 4.089 17 C 0.057 3.943 18 N -0.654 5.654 19 C 0.496 3.504 20 C -0.158 4.158 21 O -0.589 6.589 22 C -0.079 4.079 23 C -0.205 4.205 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.027 0.973 29 H 0.265 0.735 30 H 0.392 0.608 31 H 0.123 0.877 32 H 0.147 0.853 33 H 0.425 0.575 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.120 0.880 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.564 5.118 6.004 18.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.179 3.821 4 H 0.029 0.971 5 C -0.588 4.588 6 H 0.075 0.925 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.787 3.213 10 H -0.195 1.195 11 H -0.204 1.204 12 H -0.206 1.206 13 N -0.356 5.356 14 C 0.100 3.900 15 C -0.218 4.218 16 C -0.110 4.110 17 C -0.039 4.039 18 N -0.301 5.301 19 C 0.287 3.713 20 C -0.217 4.217 21 O -0.469 6.469 22 C -0.099 4.099 23 C -0.228 4.228 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.225 0.775 31 H 0.140 0.860 32 H 0.165 0.835 33 H 0.264 0.736 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.138 0.862 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.872 5.322 5.995 17.782 hybrid contribution 1.310 -0.365 -0.215 1.377 sum -14.562 4.957 5.780 16.432 Atomic orbital electron populations 1.22048 0.96406 1.00194 1.00851 1.21856 0.94534 0.99395 1.00709 1.18373 0.93161 0.89010 0.81507 0.97117 1.21611 0.92373 1.38525 1.06250 0.92528 1.25609 1.02673 0.94494 0.95153 1.69986 1.36552 1.38410 1.09778 0.85458 0.80053 0.77810 0.77979 1.19491 1.20352 1.20648 1.45288 1.12949 1.60473 1.16914 1.18209 0.86265 0.91548 0.93978 1.20891 0.94807 1.07072 0.99016 1.20773 0.95973 0.98375 0.95857 1.17462 0.88349 1.03501 0.94550 1.43512 1.08959 1.27845 1.49787 1.21919 0.93364 0.78993 0.77060 1.21863 0.90266 1.03665 1.05868 1.90722 1.44373 1.60598 1.51254 1.20744 0.93387 0.97827 0.97975 1.20526 0.98428 1.06491 0.97389 0.93698 0.92732 0.93274 0.90999 0.95439 0.92550 0.77506 0.85956 0.83500 0.73635 0.87170 0.87697 0.87861 0.86166 0.85857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.38 8.22 71.98 0.59 -4.79 16 2 C -0.13 -5.88 5.45 30.59 0.17 -5.71 16 3 C 0.28 13.93 2.20 44.25 0.10 14.03 16 4 H 0.01 0.60 6.47 -2.39 -0.02 0.59 16 5 C -0.55 -29.44 8.73 25.60 0.22 -29.22 16 6 H 0.06 3.00 7.74 -2.91 -0.02 2.98 16 7 C 0.02 1.13 5.29 84.66 0.45 1.57 16 8 N -0.91 -50.18 11.29 21.45 0.24 -49.94 16 9 Si 0.96 42.60 29.54 68.60 2.03 44.63 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 13 N -0.73 -31.27 5.19 -322.35 -1.67 -32.94 16 14 C 0.21 8.07 5.47 38.17 0.21 8.28 16 15 C -0.19 -7.15 6.71 22.38 0.15 -7.00 16 16 C -0.09 -2.67 9.95 22.38 0.22 -2.44 16 17 C 0.06 1.68 6.28 38.11 0.24 1.92 16 18 N -0.65 -13.73 5.35 -303.36 -1.62 -15.35 16 19 C 0.50 11.16 7.68 87.66 0.67 11.84 16 20 C -0.16 -1.62 10.39 71.24 0.74 -0.88 16 21 O -0.59 -19.78 14.79 -3.07 -0.05 -19.82 16 22 C -0.08 -2.65 8.65 22.38 0.19 -2.46 16 23 C -0.20 -7.30 9.89 22.38 0.22 -7.08 16 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 2.07 5.38 -2.39 -0.01 2.06 16 26 H 0.05 1.88 6.36 -2.39 -0.02 1.86 16 27 H 0.07 3.76 5.95 -2.39 -0.01 3.75 16 28 H 0.03 1.27 8.14 -2.39 -0.02 1.26 16 29 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 30 H 0.39 15.93 8.55 -92.71 -0.79 15.13 16 31 H 0.12 4.87 4.03 -2.91 -0.01 4.86 16 32 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 33 H 0.42 5.21 8.66 -92.71 -0.80 4.41 16 34 H 0.11 0.38 7.92 -2.39 -0.02 0.36 16 35 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.12 4.10 6.41 -2.91 -0.02 4.08 16 38 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -66.68 306.86 2.61 -64.08 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: -0.50 Total: 31.28 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: 4.18 Total: -21.94 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -3.05 Total: -98.22 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.82 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -66.68 2.61 -64.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036987047.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.788 kcal (2) G-P(sol) polarization free energy of solvation -66.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds