Wall clock time and date at job start Mon Mar 30 2020 06:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46729 * 2 1 4 4 N 1.46505 * 109.47081 * 119.99804 * 2 1 3 5 5 C 1.46503 * 119.99938 * 294.56259 * 4 2 1 6 6 C 1.50700 * 109.46831 * 269.99904 * 5 4 2 7 7 H 1.07999 * 120.00190 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00002 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00348 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99753 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46823 * 89.99868 * 10 8 6 12 12 H 1.48495 * 109.47143 * 209.99758 * 10 8 6 13 13 H 1.48495 * 109.47295 * 329.99989 * 10 8 6 14 14 C 1.34770 * 119.99844 * 114.56181 * 4 2 1 15 15 O 1.21606 * 120.00110 * 184.01174 * 14 4 2 16 16 C 1.47433 * 120.00238 * 4.01295 * 14 4 2 17 17 C 1.39735 * 120.20326 * 304.67450 * 16 14 4 18 18 C 1.37752 * 119.92598 * 180.02562 * 17 16 14 19 19 C 1.38613 * 120.35251 * 359.73204 * 18 17 16 20 20 C 1.37959 * 120.41604 * 0.54572 * 19 18 17 21 21 C 1.38952 * 120.06788 * 359.45426 * 20 19 18 22 22 N 1.38875 * 120.17562 * 180.29805 * 21 20 19 23 23 H 1.08996 * 109.46915 * 299.99891 * 1 2 3 24 24 H 1.08992 * 109.47159 * 60.00127 * 1 2 3 25 25 H 1.09004 * 109.46409 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46915 * 240.00109 * 2 1 3 27 27 H 1.08999 * 109.46839 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47115 * 299.99589 * 3 2 1 29 29 H 1.09003 * 109.47199 * 59.99695 * 3 2 1 30 30 H 1.08998 * 109.47146 * 29.99983 * 5 4 2 31 31 H 1.09000 * 109.46807 * 150.00254 * 5 4 2 32 32 H 0.96999 * 120.00124 * 180.02562 * 9 8 6 33 33 H 1.08001 * 120.04105 * 359.97438 * 17 16 14 34 34 H 1.07998 * 119.82431 * 179.97438 * 18 17 16 35 35 H 1.07998 * 119.79191 * 180.29603 * 19 18 17 36 36 H 1.08003 * 119.96123 * 179.72946 * 20 19 18 37 37 H 0.96999 * 120.00025 * 354.95307 * 22 21 20 38 38 H 0.97001 * 120.00001 * 174.96137 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7653 -0.1244 2.5235 6 6 2.8969 0.7966 2.9008 7 1 3.7219 0.9456 2.2199 8 6 2.8791 1.4489 4.1154 9 7 3.8664 2.2531 4.4445 10 14 1.4519 1.1917 5.2928 11 1 1.7520 0.0487 6.1921 12 1 1.2514 2.4198 6.1033 13 1 0.2179 0.9022 4.5192 14 6 2.7004 -1.8467 1.0756 15 8 3.0424 -2.4575 2.0700 16 6 3.0320 -2.3709 -0.2619 17 6 2.0219 -2.5848 -1.2034 18 6 2.3381 -3.0753 -2.4512 19 6 3.6553 -3.3534 -2.7813 20 6 4.6632 -3.1531 -1.8609 21 6 4.3640 -2.6589 -0.5972 22 7 5.3777 -2.4505 0.3289 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 0.8307 0.4361 2.5072 31 1 1.6933 -0.9299 3.2544 32 1 3.8540 2.7117 5.2991 33 1 0.9942 -2.3666 -0.9528 34 1 1.5560 -3.2404 -3.1774 35 1 3.8935 -3.7332 -3.7638 36 1 5.6865 -3.3764 -2.1245 37 1 6.2867 -2.7180 0.1214 38 1 5.1766 -2.0375 1.1833 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037409482.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:58 Heat of formation + Delta-G solvation = -9.720848 kcal Electronic energy + Delta-G solvation = -20382.463049 eV Core-core repulsion = 17417.679461 eV Total energy + Delta-G solvation = -2964.783588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.07962 -38.03214 -36.06965 -34.26402 -32.79936 -31.08928 -30.97023 -28.63678 -27.68158 -26.70704 -23.73741 -22.52061 -21.64622 -21.06073 -18.54610 -17.02367 -16.91122 -16.77511 -16.59976 -15.38054 -14.72179 -14.34630 -13.95677 -13.86788 -13.63966 -13.35551 -13.15086 -12.93024 -12.49836 -12.40072 -11.97863 -11.71412 -11.60939 -11.33361 -11.11492 -10.90921 -10.87018 -10.63282 -10.49675 -10.19943 -10.10378 -9.47330 -9.08384 -8.63396 -8.57347 -7.70500 -7.34580 -6.08860 -4.06419 1.35560 1.76606 3.28798 3.34632 3.35766 3.37402 3.80143 4.09360 4.13311 4.39670 4.93270 5.03340 5.15102 5.25279 5.30936 5.50263 5.55725 5.58781 5.71605 5.86749 5.99304 6.06230 6.11331 6.28224 6.34152 6.37915 6.52676 6.59634 6.68177 6.80337 6.96117 7.00844 7.03482 7.39288 7.61682 7.68400 7.97781 8.30847 8.47608 8.92784 8.99677 9.52178 11.04120 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024795 B = 0.006724 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.980915 B = 4163.216180 C = 4629.855686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.124 3.876 3 C -0.152 4.152 4 N -0.578 5.578 5 C 0.214 3.786 6 C -0.521 4.521 7 H 0.076 0.924 8 C 0.072 3.928 9 N -0.898 5.898 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.286 1.286 13 H -0.266 1.266 14 C 0.557 3.443 15 O -0.545 6.545 16 C -0.202 4.202 17 C -0.044 4.044 18 C -0.193 4.193 19 C -0.059 4.059 20 C -0.210 4.210 21 C 0.265 3.735 22 N -0.860 5.860 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.052 0.948 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.031 0.969 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.396 0.604 38 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.134 -7.315 -14.536 16.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.020 3.980 3 C -0.210 4.210 4 N -0.309 5.309 5 C 0.093 3.907 6 C -0.560 4.560 7 H 0.094 0.906 8 C -0.130 4.130 9 N -0.537 5.537 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.191 1.191 14 C 0.344 3.656 15 O -0.423 6.423 16 C -0.210 4.210 17 C -0.063 4.063 18 C -0.213 4.213 19 C -0.078 4.078 20 C -0.233 4.233 21 C 0.155 3.845 22 N -0.397 5.397 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.224 0.776 38 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.917 -7.470 -13.816 15.975 hybrid contribution -0.344 0.119 0.955 1.022 sum -3.261 -7.351 -12.862 15.168 Atomic orbital electron populations 1.22208 0.95917 1.01609 1.02409 1.21252 0.93603 0.94592 0.88575 1.22076 1.01899 0.95103 1.01925 1.47960 1.53323 1.21380 1.08194 1.19645 0.97127 0.94281 0.79623 1.21319 1.06461 1.24927 1.03289 0.90595 1.24837 0.95823 0.94807 0.97511 1.69889 1.31599 1.29472 1.22700 0.86901 0.83406 0.77914 0.81794 1.19990 1.21160 1.19099 1.18067 0.78474 0.81026 0.87985 1.90750 1.53979 1.58659 1.38938 1.19541 0.92818 1.12159 0.96473 1.21057 0.98153 0.94836 0.92257 1.20725 0.96453 1.06969 0.97172 1.20904 0.92563 0.96123 0.98184 1.20506 0.99775 1.10067 0.92919 1.17630 0.87462 0.90386 0.89059 1.42579 1.08608 1.68662 1.19839 0.91802 0.91888 0.92929 0.89288 0.92348 0.93301 0.90450 0.95119 0.94616 0.92641 0.85796 0.86279 0.86269 0.86094 0.77581 0.75650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.04 37.16 0.34 -1.98 16 2 C 0.12 2.08 2.51 -67.92 -0.17 1.91 16 3 C -0.15 -2.67 8.35 37.16 0.31 -2.36 16 4 N -0.58 -12.07 2.38 -168.72 -0.40 -12.47 16 5 C 0.21 5.19 3.55 -5.19 -0.02 5.17 16 6 C -0.52 -14.50 8.40 -34.44 -0.29 -14.79 16 7 H 0.08 2.30 7.77 -52.49 -0.41 1.90 16 8 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 9 N -0.90 -27.18 13.96 55.43 0.77 -26.41 16 10 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 14 C 0.56 11.86 6.40 -12.52 -0.08 11.78 16 15 O -0.54 -13.54 15.60 5.27 0.08 -13.46 16 16 C -0.20 -3.51 4.84 -104.80 -0.51 -4.02 16 17 C -0.04 -0.63 7.41 -39.20 -0.29 -0.92 16 18 C -0.19 -2.30 10.02 -39.62 -0.40 -2.70 16 19 C -0.06 -0.67 10.03 -39.55 -0.40 -1.07 16 20 C -0.21 -2.69 9.88 -39.42 -0.39 -3.08 16 21 C 0.26 4.21 6.75 -83.62 -0.56 3.64 16 22 N -0.86 -13.32 8.91 32.54 0.29 -13.03 16 23 H 0.06 0.99 6.89 -51.93 -0.36 0.63 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.05 0.69 7.28 -51.93 -0.38 0.32 16 26 H 0.09 1.37 4.63 -51.93 -0.24 1.13 16 27 H 0.06 1.13 7.97 -51.93 -0.41 0.72 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 1.54 6.94 -51.93 -0.36 1.18 16 30 H 0.03 0.72 5.76 -51.93 -0.30 0.42 16 31 H 0.04 0.94 6.80 -51.93 -0.35 0.58 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.12 1.63 6.39 -52.49 -0.34 1.30 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 36 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 37 H 0.40 4.73 8.84 -40.82 -0.36 4.37 16 38 H 0.41 7.62 7.02 -40.82 -0.29 7.33 16 LS Contribution 306.79 15.07 4.62 4.62 Total: -1.00 -32.51 306.79 -6.93 -39.44 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -5.07 Total: 10.95 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -2.56 Total: -6.43 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.66 Total: -51.92 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.08 Total: -13.46 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -32.51 -6.93 -39.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037409482.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.718 kcal (2) G-P(sol) polarization free energy of solvation -32.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds