Wall clock time and date at job start Mon Mar 30 2020 06:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46729 * 2 1 4 4 N 1.46505 * 109.47081 * 119.99804 * 2 1 3 5 5 C 1.46503 * 119.99938 * 294.56259 * 4 2 1 6 6 C 1.50700 * 109.46831 * 269.99904 * 5 4 2 7 7 H 1.07999 * 120.00190 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00002 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00348 * 180.02562 * 8 6 5 10 10 Si 1.86802 * 119.99753 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46823 * 89.99868 * 10 8 6 12 12 H 1.48495 * 109.47143 * 209.99758 * 10 8 6 13 13 H 1.48495 * 109.47295 * 329.99989 * 10 8 6 14 14 C 1.34770 * 119.99844 * 114.56181 * 4 2 1 15 15 O 1.21606 * 120.00110 * 184.01174 * 14 4 2 16 16 C 1.47433 * 120.00238 * 4.01295 * 14 4 2 17 17 C 1.39735 * 120.20326 * 304.67450 * 16 14 4 18 18 C 1.37752 * 119.92598 * 180.02562 * 17 16 14 19 19 C 1.38613 * 120.35251 * 359.73204 * 18 17 16 20 20 C 1.37959 * 120.41604 * 0.54572 * 19 18 17 21 21 C 1.38952 * 120.06788 * 359.45426 * 20 19 18 22 22 N 1.38875 * 120.17562 * 180.29805 * 21 20 19 23 23 H 1.08996 * 109.46915 * 299.99891 * 1 2 3 24 24 H 1.08992 * 109.47159 * 60.00127 * 1 2 3 25 25 H 1.09004 * 109.46409 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46915 * 240.00109 * 2 1 3 27 27 H 1.08999 * 109.46839 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47115 * 299.99589 * 3 2 1 29 29 H 1.09003 * 109.47199 * 59.99695 * 3 2 1 30 30 H 1.08998 * 109.47146 * 29.99983 * 5 4 2 31 31 H 1.09000 * 109.46807 * 150.00254 * 5 4 2 32 32 H 0.96999 * 120.00124 * 180.02562 * 9 8 6 33 33 H 1.08001 * 120.04105 * 359.97438 * 17 16 14 34 34 H 1.07998 * 119.82431 * 179.97438 * 18 17 16 35 35 H 1.07998 * 119.79191 * 180.29603 * 19 18 17 36 36 H 1.08003 * 119.96123 * 179.72946 * 20 19 18 37 37 H 0.96999 * 120.00025 * 354.95307 * 22 21 20 38 38 H 0.97001 * 120.00001 * 174.96137 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7653 -0.1244 2.5235 6 6 2.8969 0.7966 2.9008 7 1 3.7219 0.9456 2.2199 8 6 2.8791 1.4489 4.1154 9 7 3.8664 2.2531 4.4445 10 14 1.4519 1.1917 5.2928 11 1 1.7520 0.0487 6.1921 12 1 1.2514 2.4198 6.1033 13 1 0.2179 0.9022 4.5192 14 6 2.7004 -1.8467 1.0756 15 8 3.0424 -2.4575 2.0700 16 6 3.0320 -2.3709 -0.2619 17 6 2.0219 -2.5848 -1.2034 18 6 2.3381 -3.0753 -2.4512 19 6 3.6553 -3.3534 -2.7813 20 6 4.6632 -3.1531 -1.8609 21 6 4.3640 -2.6589 -0.5972 22 7 5.3777 -2.4505 0.3289 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 0.8307 0.4361 2.5072 31 1 1.6933 -0.9299 3.2544 32 1 3.8540 2.7117 5.2991 33 1 0.9942 -2.3666 -0.9528 34 1 1.5560 -3.2404 -3.1774 35 1 3.8935 -3.7332 -3.7638 36 1 5.6865 -3.3764 -2.1245 37 1 6.2867 -2.7180 0.1214 38 1 5.1766 -2.0375 1.1833 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037409482.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:58 Heat of formation + Delta-G solvation = -32.310886 kcal Electronic energy + Delta-G solvation = -20383.442627 eV Core-core repulsion = 17417.679461 eV Total energy + Delta-G solvation = -2965.763166 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.46229 -39.34138 -37.65044 -35.41232 -34.89064 -32.62709 -32.30376 -29.99750 -29.28323 -27.99428 -25.28686 -24.00099 -22.93586 -22.43273 -19.99965 -19.08025 -18.41017 -17.94593 -17.82525 -17.01864 -16.26110 -15.95033 -15.37477 -15.14459 -14.93081 -14.69300 -14.56687 -14.40196 -14.09111 -13.77607 -13.60645 -13.35074 -12.95624 -12.76493 -12.59668 -12.40357 -12.31418 -12.07823 -11.93115 -11.88322 -11.60362 -11.41704 -10.81219 -10.69783 -9.74370 -9.42361 -8.48309 -8.32083 -6.34571 0.26493 0.72809 1.30657 1.34246 1.42218 1.80725 2.30228 2.32986 2.95054 2.98726 3.01871 3.68228 3.96310 4.02046 4.25336 4.27616 4.44334 4.58439 4.60268 4.69940 4.76734 4.84813 4.87973 4.92788 4.99913 5.06901 5.12024 5.31364 5.39791 5.45651 5.53310 5.55120 5.69409 5.70374 6.00969 6.26858 6.45980 6.64966 6.68875 6.86964 7.22550 7.39486 8.84234 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024795 B = 0.006724 C = 0.006046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.980915 B = 4163.216180 C = 4629.855686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.119 3.881 3 C -0.146 4.146 4 N -0.584 5.584 5 C 0.225 3.775 6 C -0.518 4.518 7 H 0.033 0.967 8 C 0.014 3.986 9 N -0.944 5.944 10 Si 0.938 3.062 11 H -0.278 1.278 12 H -0.276 1.276 13 H -0.242 1.242 14 C 0.551 3.449 15 O -0.596 6.596 16 C -0.235 4.235 17 C -0.049 4.049 18 C -0.181 4.181 19 C -0.047 4.047 20 C -0.208 4.208 21 C 0.240 3.760 22 N -0.867 5.867 23 H 0.047 0.953 24 H 0.099 0.901 25 H 0.063 0.937 26 H 0.109 0.891 27 H 0.026 0.974 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.015 0.985 32 H 0.267 0.733 33 H 0.134 0.866 34 H 0.156 0.844 35 H 0.161 0.839 36 H 0.145 0.855 37 H 0.409 0.591 38 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.248 -8.422 -17.676 20.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.017 3.983 3 C -0.204 4.204 4 N -0.313 5.313 5 C 0.103 3.897 6 C -0.557 4.557 7 H 0.052 0.948 8 C -0.184 4.184 9 N -0.584 5.584 10 Si 0.762 3.238 11 H -0.204 1.204 12 H -0.201 1.201 13 H -0.165 1.165 14 C 0.341 3.659 15 O -0.478 6.478 16 C -0.243 4.243 17 C -0.068 4.068 18 C -0.201 4.201 19 C -0.066 4.066 20 C -0.231 4.231 21 C 0.131 3.869 22 N -0.403 5.403 23 H 0.066 0.934 24 H 0.117 0.883 25 H 0.082 0.918 26 H 0.127 0.873 27 H 0.045 0.955 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.151 0.849 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.163 0.837 37 H 0.239 0.761 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.045 -8.578 -17.034 19.728 hybrid contribution 0.416 0.433 1.772 1.871 sum -4.630 -8.145 -15.262 17.909 Atomic orbital electron populations 1.22177 0.93178 1.02725 1.03424 1.21579 0.95691 0.93506 0.87549 1.22009 0.99836 0.96116 1.02402 1.48056 1.53516 1.21587 1.08137 1.19279 0.96182 0.92841 0.81437 1.21444 1.06311 1.25269 1.02629 0.94823 1.25725 0.98762 0.94493 0.99419 1.70034 1.33948 1.30918 1.23515 0.85850 0.80735 0.77830 0.79390 1.20426 1.20082 1.16490 1.18802 0.77184 0.80592 0.89292 1.90694 1.55773 1.60229 1.41151 1.19408 0.94561 1.15188 0.95187 1.21225 0.97795 0.95130 0.92669 1.21162 0.97781 1.04711 0.96450 1.21439 0.91866 0.93950 0.99331 1.20863 1.01709 1.08899 0.91587 1.18024 0.87005 0.91526 0.90391 1.42577 1.09617 1.68981 1.19147 0.93350 0.88258 0.91778 0.87287 0.95496 0.89238 0.93398 0.93488 0.96722 0.92448 0.84864 0.82633 0.82173 0.83695 0.76069 0.77888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.01 9.04 71.98 0.65 -3.36 16 2 C 0.12 3.89 2.51 44.99 0.11 4.00 16 3 C -0.15 -5.12 8.35 71.98 0.60 -4.52 16 4 N -0.58 -24.96 2.38 -805.97 -1.92 -26.88 16 5 C 0.22 11.22 3.55 85.63 0.30 11.52 16 6 C -0.52 -30.31 8.40 25.60 0.22 -30.09 16 7 H 0.03 2.20 7.77 -2.91 -0.02 2.17 16 8 C 0.01 0.82 5.47 84.65 0.46 1.28 16 9 N -0.94 -59.57 13.96 21.45 0.30 -59.27 16 10 Si 0.94 45.08 27.47 68.60 1.88 46.96 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16 14 C 0.55 24.34 6.40 86.67 0.55 24.89 16 15 O -0.60 -31.42 15.60 -4.05 -0.06 -31.48 16 16 C -0.24 -8.14 4.84 -19.98 -0.10 -8.23 16 17 C -0.05 -1.28 7.41 22.52 0.17 -1.11 16 18 C -0.18 -3.45 10.02 22.24 0.22 -3.23 16 19 C -0.05 -0.85 10.03 22.29 0.22 -0.62 16 20 C -0.21 -4.74 9.88 22.37 0.22 -4.52 16 21 C 0.24 7.54 6.75 38.71 0.26 7.81 16 22 N -0.87 -28.12 8.91 -50.95 -0.45 -28.57 16 23 H 0.05 1.39 6.89 -2.39 -0.02 1.37 16 24 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.06 1.50 7.28 -2.38 -0.02 1.48 16 26 H 0.11 3.16 4.63 -2.39 -0.01 3.14 16 27 H 0.03 1.07 7.97 -2.39 -0.02 1.05 16 28 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.05 1.94 6.94 -2.39 -0.02 1.93 16 30 H 0.05 2.19 5.76 -2.39 -0.01 2.18 16 31 H 0.01 0.80 6.80 -2.39 -0.02 0.78 16 32 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 33 H 0.13 3.11 6.39 -2.91 -0.02 3.10 16 34 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 35 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 36 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 37 H 0.41 10.14 8.84 -92.71 -0.82 9.32 16 38 H 0.39 15.81 7.02 -92.71 -0.65 15.16 16 Total: -1.00 -76.57 306.79 3.21 -73.36 By element: Atomic # 1 Polarization: 32.49 SS G_CDS: -0.44 Total: 32.05 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 3.90 Total: -6.18 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -2.08 Total: -114.72 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.06 Total: -31.48 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Total: -76.57 3.21 -73.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037409482.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.049 kcal (2) G-P(sol) polarization free energy of solvation -76.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds