Wall clock time and date at job start Mon Mar 30 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47140 * 2 1 4 4 O 1.42902 * 109.47073 * 119.99884 * 2 1 3 5 5 C 1.35665 * 116.99637 * 155.31721 * 4 2 1 6 6 C 1.39076 * 119.89177 * 5.61531 * 5 4 2 7 7 C 1.37109 * 120.12210 * 180.02562 * 6 5 4 8 8 C 1.40046 * 119.88017 * 359.97438 * 7 6 5 9 9 C 1.46863 * 120.11113 * 180.02562 * 8 7 6 10 10 O 1.21292 * 119.99901 * 359.97438 * 9 8 7 11 11 C 1.50699 * 119.99813 * 179.97438 * 9 8 7 12 12 H 1.09005 * 109.46875 * 34.99516 * 11 9 8 13 13 C 1.52996 * 109.47160 * 275.00124 * 11 9 8 14 14 C 1.50700 * 109.47046 * 154.99702 * 11 9 8 15 15 H 1.07990 * 119.99892 * 5.65971 * 14 11 9 16 16 C 1.37878 * 119.99955 * 185.65951 * 14 11 9 17 17 N 1.31506 * 120.00135 * 198.46319 * 16 14 11 18 18 Si 1.86807 * 120.00116 * 18.46116 * 16 14 11 19 19 H 1.48498 * 109.47249 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.46964 * 300.00597 * 18 16 14 21 21 H 1.48502 * 109.46845 * 59.99818 * 18 16 14 22 22 C 1.40031 * 119.77220 * 0.26892 * 8 7 6 23 23 C 1.37122 * 119.88240 * 359.47295 * 22 8 7 24 24 H 1.09003 * 109.47321 * 300.00379 * 1 2 3 25 25 H 1.08998 * 109.47431 * 60.00261 * 1 2 3 26 26 H 1.09007 * 109.47250 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47321 * 239.99621 * 2 1 3 28 28 H 1.09000 * 109.47338 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.46785 * 299.99984 * 3 2 1 30 30 H 1.08995 * 109.47294 * 59.99978 * 3 2 1 31 31 H 1.08004 * 119.93815 * 0.02562 * 6 5 4 32 32 H 1.07995 * 120.06377 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.47085 * 175.11537 * 13 11 9 34 34 H 1.09004 * 109.46539 * 295.11058 * 13 11 9 35 35 H 1.09000 * 109.47412 * 55.11095 * 13 11 9 36 36 H 0.96998 * 119.99981 * 354.95621 * 17 16 14 37 37 H 1.07997 * 120.06210 * 179.70421 * 22 8 7 38 38 H 1.08004 * 119.94523 * 180.25085 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2471 -1.2180 1.1002 6 6 4.0377 -1.0056 -0.0241 7 6 5.2923 -1.5540 -0.0967 8 6 5.7774 -2.3288 0.9643 9 6 7.1207 -2.9182 0.8922 10 8 7.8117 -2.7346 -0.0876 11 6 7.6404 -3.7511 2.0355 12 1 6.8185 -4.3141 2.4778 13 6 8.2587 -2.8353 3.0937 14 6 8.6872 -4.7074 1.5251 15 1 9.0158 -4.6503 0.4979 16 6 9.2255 -5.6553 2.3694 17 7 10.3640 -6.2379 2.0634 18 14 8.3374 -6.1118 3.9482 19 1 9.1177 -7.1462 4.6738 20 1 8.1982 -4.9063 4.8042 21 1 6.9905 -6.6453 3.6220 22 6 4.9754 -2.5439 2.0918 23 6 3.7242 -1.9866 2.1566 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9563 0.8899 31 1 3.6628 -0.4076 -0.8416 32 1 5.9052 -1.3888 -0.9703 33 1 8.5562 -3.4284 3.9585 34 1 9.1339 -2.3371 2.6764 35 1 7.5268 -2.0880 3.4000 36 1 10.7882 -6.0556 1.2104 37 1 5.3430 -3.1446 2.9106 38 1 3.1064 -2.1484 3.0276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037742930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:58 Heat of formation + Delta-G solvation = -61.993128 kcal Electronic energy + Delta-G solvation = -19285.057374 eV Core-core repulsion = 16285.714338 eV Total energy + Delta-G solvation = -2999.343035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.45683 -38.90575 -36.98779 -33.84451 -33.48191 -31.53892 -30.75285 -29.66808 -27.61985 -24.87428 -24.19828 -23.38710 -21.50618 -21.07899 -18.75388 -18.40066 -17.35781 -16.17929 -15.80292 -15.66697 -14.87822 -14.61056 -14.02698 -13.92991 -13.56053 -13.46389 -13.29569 -13.00252 -12.68785 -12.56055 -12.43129 -12.28803 -11.92732 -11.75995 -11.69119 -11.32523 -11.02887 -10.81793 -10.65912 -10.50561 -10.03444 -9.80577 -9.02068 -8.89327 -8.63704 -8.13313 -8.11542 -6.44960 -4.03310 1.05032 1.45415 2.97139 3.08279 3.35068 3.41097 3.58926 4.09055 4.43106 4.49286 4.55596 4.69917 4.81709 4.85179 4.91783 5.17780 5.19659 5.28095 5.37243 5.39505 5.45169 5.50178 5.71455 5.74507 5.81899 5.99266 6.10734 6.28686 6.30225 6.40920 6.53629 6.59993 6.68748 6.75272 7.03423 7.29065 7.33480 7.97466 8.43674 8.58007 8.99393 9.65132 10.96336 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.037729 B = 0.004355 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.961733 B = 6428.052074 C = 6842.131580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.074 3.926 3 C -0.182 4.182 4 O -0.309 6.309 5 C 0.148 3.852 6 C -0.226 4.226 7 C -0.030 4.030 8 C -0.194 4.194 9 C 0.408 3.592 10 O -0.459 6.459 11 C -0.021 4.021 12 H 0.042 0.958 13 C -0.143 4.143 14 C -0.595 4.595 15 H 0.068 0.932 16 C 0.031 3.969 17 N -0.904 5.904 18 Si 1.042 2.958 19 H -0.284 1.284 20 H -0.272 1.272 21 H -0.282 1.282 22 C -0.032 4.032 23 C -0.167 4.167 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.028 0.972 36 H 0.269 0.731 37 H 0.143 0.857 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.648 13.148 -1.084 23.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.018 3.982 3 C -0.239 4.239 4 O -0.223 6.223 5 C 0.103 3.897 6 C -0.245 4.245 7 C -0.048 4.048 8 C -0.195 4.195 9 C 0.286 3.714 10 O -0.334 6.334 11 C -0.041 4.041 12 H 0.060 0.940 13 C -0.201 4.201 14 C -0.633 4.633 15 H 0.086 0.914 16 C -0.174 4.174 17 N -0.538 5.538 18 Si 0.870 3.130 19 H -0.210 1.210 20 H -0.198 1.198 21 H -0.208 1.208 22 C -0.051 4.051 23 C -0.185 4.185 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.160 0.840 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.284 12.317 -0.088 22.882 hybrid contribution -0.122 1.021 -1.644 1.939 sum -19.406 13.338 -1.731 23.611 Atomic orbital electron populations 1.21851 0.92437 1.03228 1.03006 1.22464 0.95399 0.92723 0.87583 1.22402 1.02482 0.95903 1.03103 1.86060 1.29326 1.68056 1.38871 1.19274 0.84051 0.92092 0.94309 1.21074 0.96509 1.07632 0.99250 1.21120 0.93994 0.92135 0.97570 1.20995 0.98634 1.03639 0.96219 1.22792 0.83751 0.76787 0.88096 1.90380 1.58251 1.52180 1.32629 1.19418 0.97585 0.94735 0.92357 0.93992 1.22128 0.99864 0.98720 0.99385 1.21912 1.24002 1.17000 1.00371 0.91404 1.25769 0.94617 0.93787 1.03256 1.70832 1.13138 1.46372 1.23425 0.84097 0.76043 0.76859 0.75969 1.21005 1.19836 1.20803 1.21327 0.91830 0.94945 0.96949 1.20283 0.97400 1.01820 0.99038 0.91457 0.90541 0.91579 0.90698 0.91578 0.91017 0.91391 0.85225 0.84977 0.91815 0.92994 0.95270 0.92085 0.83971 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.56 37.15 0.36 -0.64 16 2 C 0.07 0.65 2.84 -26.73 -0.08 0.58 16 3 C -0.18 -1.39 9.16 37.16 0.34 -1.05 16 4 O -0.31 -3.68 9.79 -18.69 -0.18 -3.87 16 5 C 0.15 1.99 6.61 -38.96 -0.26 1.73 16 6 C -0.23 -3.02 8.18 -39.68 -0.32 -3.34 16 7 C -0.03 -0.48 9.57 -39.31 -0.38 -0.86 16 8 C -0.19 -3.54 5.87 -105.06 -0.62 -4.15 16 9 C 0.41 9.25 6.21 -30.82 -0.19 9.06 16 10 O -0.46 -11.79 15.77 5.55 0.09 -11.70 16 11 C -0.02 -0.51 1.51 -92.93 -0.14 -0.65 16 12 H 0.04 0.94 5.36 -51.93 -0.28 0.66 16 13 C -0.14 -3.10 8.85 37.16 0.33 -2.77 16 14 C -0.60 -17.26 8.62 -34.44 -0.30 -17.56 16 15 H 0.07 2.21 7.22 -52.49 -0.38 1.83 16 16 C 0.03 0.89 5.34 -17.82 -0.10 0.80 16 17 N -0.90 -28.14 13.69 55.43 0.76 -27.38 16 18 Si 1.04 24.48 26.45 -169.99 -4.50 19.98 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -5.72 5.54 56.52 0.31 -5.41 16 21 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 22 C -0.03 -0.51 9.33 -39.32 -0.37 -0.88 16 23 C -0.17 -2.29 9.95 -39.67 -0.39 -2.69 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.63 6.32 -51.93 -0.33 0.31 16 28 H 0.07 0.58 6.86 -51.93 -0.36 0.22 16 29 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.13 1.39 5.38 -52.48 -0.28 1.10 16 32 H 0.13 2.10 7.64 -52.49 -0.40 1.70 16 33 H 0.06 1.38 4.88 -51.93 -0.25 1.12 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.27 8.44 8.73 -40.82 -0.36 8.09 16 37 H 0.14 2.11 6.45 -52.49 -0.34 1.77 16 38 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 LS Contribution 310.95 15.07 4.69 4.69 Total: -1.00 -32.95 310.95 -6.50 -39.45 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.24 Total: 1.24 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: -2.11 Total: -22.42 kcal Atomic # 7 Polarization: -28.14 SS G_CDS: 0.76 Total: -27.38 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.10 Total: -15.57 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -4.50 Total: 19.98 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.95 -6.50 -39.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037742930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.544 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds