Wall clock time and date at job start Mon Mar 30 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47140 * 2 1 4 4 O 1.42902 * 109.47073 * 119.99884 * 2 1 3 5 5 C 1.35665 * 116.99637 * 155.31721 * 4 2 1 6 6 C 1.39076 * 119.89177 * 5.61531 * 5 4 2 7 7 C 1.37109 * 120.12210 * 180.02562 * 6 5 4 8 8 C 1.40046 * 119.88017 * 359.97438 * 7 6 5 9 9 C 1.46863 * 120.11113 * 180.02562 * 8 7 6 10 10 O 1.21292 * 119.99901 * 359.97438 * 9 8 7 11 11 C 1.50699 * 119.99813 * 179.97438 * 9 8 7 12 12 H 1.09005 * 109.46875 * 34.99516 * 11 9 8 13 13 C 1.52996 * 109.47160 * 275.00124 * 11 9 8 14 14 C 1.50700 * 109.47046 * 154.99702 * 11 9 8 15 15 H 1.07990 * 119.99892 * 5.65971 * 14 11 9 16 16 C 1.37878 * 119.99955 * 185.65951 * 14 11 9 17 17 N 1.31506 * 120.00135 * 198.46319 * 16 14 11 18 18 Si 1.86807 * 120.00116 * 18.46116 * 16 14 11 19 19 H 1.48498 * 109.47249 * 180.02562 * 18 16 14 20 20 H 1.48500 * 109.46964 * 300.00597 * 18 16 14 21 21 H 1.48502 * 109.46845 * 59.99818 * 18 16 14 22 22 C 1.40031 * 119.77220 * 0.26892 * 8 7 6 23 23 C 1.37122 * 119.88240 * 359.47295 * 22 8 7 24 24 H 1.09003 * 109.47321 * 300.00379 * 1 2 3 25 25 H 1.08998 * 109.47431 * 60.00261 * 1 2 3 26 26 H 1.09007 * 109.47250 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47321 * 239.99621 * 2 1 3 28 28 H 1.09000 * 109.47338 * 180.02562 * 3 2 1 29 29 H 1.09008 * 109.46785 * 299.99984 * 3 2 1 30 30 H 1.08995 * 109.47294 * 59.99978 * 3 2 1 31 31 H 1.08004 * 119.93815 * 0.02562 * 6 5 4 32 32 H 1.07995 * 120.06377 * 179.97438 * 7 6 5 33 33 H 1.08997 * 109.47085 * 175.11537 * 13 11 9 34 34 H 1.09004 * 109.46539 * 295.11058 * 13 11 9 35 35 H 1.09000 * 109.47412 * 55.11095 * 13 11 9 36 36 H 0.96998 * 119.99981 * 354.95621 * 17 16 14 37 37 H 1.07997 * 120.06210 * 179.70421 * 22 8 7 38 38 H 1.08004 * 119.94523 * 180.25085 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2471 -1.2180 1.1002 6 6 4.0377 -1.0056 -0.0241 7 6 5.2923 -1.5540 -0.0967 8 6 5.7774 -2.3288 0.9643 9 6 7.1207 -2.9182 0.8922 10 8 7.8117 -2.7346 -0.0876 11 6 7.6404 -3.7511 2.0355 12 1 6.8185 -4.3141 2.4778 13 6 8.2587 -2.8353 3.0937 14 6 8.6872 -4.7074 1.5251 15 1 9.0158 -4.6503 0.4979 16 6 9.2255 -5.6553 2.3694 17 7 10.3640 -6.2379 2.0634 18 14 8.3374 -6.1118 3.9482 19 1 9.1177 -7.1462 4.6738 20 1 8.1982 -4.9063 4.8042 21 1 6.9905 -6.6453 3.6220 22 6 4.9754 -2.5439 2.0918 23 6 3.7242 -1.9866 2.1566 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8901 30 1 1.6766 1.9563 0.8899 31 1 3.6628 -0.4076 -0.8416 32 1 5.9052 -1.3888 -0.9703 33 1 8.5562 -3.4284 3.9585 34 1 9.1339 -2.3371 2.6764 35 1 7.5268 -2.0880 3.4000 36 1 10.7882 -6.0556 1.2104 37 1 5.3430 -3.1446 2.9106 38 1 3.1064 -2.1484 3.0276 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037742930.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:57 Heat of formation + Delta-G solvation = -82.916315 kcal Electronic energy + Delta-G solvation = -19285.964671 eV Core-core repulsion = 16285.714338 eV Total energy + Delta-G solvation = -3000.250333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.53963 -40.40471 -38.24603 -35.87556 -34.23889 -33.43465 -32.01159 -30.94515 -28.17749 -26.86391 -25.72390 -24.47678 -23.00022 -22.00190 -20.38366 -19.48952 -19.33483 -17.65738 -17.03252 -16.51148 -16.27980 -15.86511 -15.60939 -15.28787 -14.92608 -14.70103 -14.60236 -14.21106 -13.92890 -13.70439 -13.56299 -13.48221 -13.15501 -13.08941 -12.93182 -12.70453 -12.37881 -12.14708 -11.87893 -11.72204 -11.59946 -11.56639 -11.01381 -10.53537 -10.22126 -10.14215 -9.26559 -8.79218 -6.38983 -0.25359 0.33325 1.48182 1.55650 1.60303 1.77439 2.12852 2.54091 2.79858 3.06024 3.30200 3.68873 3.78205 3.87287 3.98435 4.14840 4.22987 4.29761 4.42142 4.50430 4.54133 4.70393 4.72234 4.80568 4.84859 4.87627 4.90065 4.96108 5.11309 5.15498 5.24969 5.25577 5.31414 5.44299 5.50791 5.64214 5.93110 6.02616 6.36796 6.54890 6.83369 7.41340 8.60420 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.037729 B = 0.004355 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.961733 B = 6428.052074 C = 6842.131580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.063 3.937 3 C -0.180 4.180 4 O -0.312 6.312 5 C 0.162 3.838 6 C -0.219 4.219 7 C -0.036 4.036 8 C -0.225 4.225 9 C 0.405 3.595 10 O -0.512 6.512 11 C -0.029 4.029 12 H 0.072 0.928 13 C -0.137 4.137 14 C -0.608 4.608 15 H 0.008 0.992 16 C -0.023 4.023 17 N -0.936 5.936 18 Si 1.084 2.916 19 H -0.291 1.291 20 H -0.224 1.224 21 H -0.253 1.253 22 C -0.028 4.028 23 C -0.164 4.164 24 H 0.068 0.932 25 H 0.098 0.902 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.156 0.844 32 H 0.122 0.878 33 H 0.068 0.932 34 H 0.026 0.974 35 H 0.072 0.928 36 H 0.247 0.753 37 H 0.155 0.845 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.836 14.708 1.034 28.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.007 3.993 3 C -0.237 4.237 4 O -0.226 6.226 5 C 0.115 3.885 6 C -0.237 4.237 7 C -0.054 4.054 8 C -0.226 4.226 9 C 0.287 3.713 10 O -0.392 6.392 11 C -0.048 4.048 12 H 0.089 0.911 13 C -0.194 4.194 14 C -0.645 4.645 15 H 0.026 0.974 16 C -0.220 4.220 17 N -0.572 5.572 18 Si 0.902 3.098 19 H -0.217 1.217 20 H -0.148 1.148 21 H -0.178 1.178 22 C -0.046 4.046 23 C -0.182 4.182 24 H 0.087 0.913 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.112 0.888 30 H 0.086 0.914 31 H 0.174 0.826 32 H 0.140 0.860 33 H 0.087 0.913 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.172 0.828 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -23.505 13.917 2.015 27.390 hybrid contribution 1.052 0.640 -2.445 2.737 sum -22.452 14.556 -0.430 26.762 Atomic orbital electron populations 1.21882 0.90697 1.03440 1.04204 1.22834 0.96775 0.93047 0.86609 1.22403 1.01688 0.95344 1.04278 1.86088 1.28178 1.67742 1.40548 1.19434 0.84468 0.90817 0.93788 1.21247 0.95175 1.07069 1.00220 1.21121 0.95094 0.92329 0.96878 1.20593 0.96873 1.06347 0.98775 1.23068 0.85461 0.76007 0.86758 1.90359 1.60174 1.54408 1.34229 1.19477 0.96963 0.94681 0.93703 0.91076 1.22010 0.99937 0.99144 0.98329 1.22060 1.25642 1.18810 0.97988 0.97362 1.27589 0.94133 0.92949 1.07290 1.70996 1.15201 1.48230 1.22768 0.83677 0.75726 0.78411 0.71986 1.21738 1.14799 1.17784 1.21416 0.92174 0.94940 0.96086 1.20548 0.96760 1.00951 0.99990 0.91324 0.88328 0.91873 0.90226 0.92754 0.88820 0.91365 0.82627 0.85985 0.91300 0.95468 0.90897 0.94450 0.82775 0.82035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.56 71.98 0.69 -0.72 16 2 C 0.06 0.87 2.84 30.59 0.09 0.95 16 3 C -0.18 -2.14 9.16 71.98 0.66 -1.48 16 4 O -0.31 -6.22 9.79 -89.81 -0.88 -7.09 16 5 C 0.16 3.76 6.61 22.67 0.15 3.91 16 6 C -0.22 -5.29 8.18 22.21 0.18 -5.11 16 7 C -0.04 -1.13 9.57 22.44 0.21 -0.91 16 8 C -0.22 -8.01 5.87 -20.15 -0.12 -8.13 16 9 C 0.41 18.82 6.21 27.94 0.17 19.00 16 10 O -0.51 -28.07 15.77 -3.07 -0.05 -28.12 16 11 C -0.03 -1.37 1.51 -12.29 -0.02 -1.39 16 12 H 0.07 2.98 5.36 -2.38 -0.01 2.97 16 13 C -0.14 -5.69 8.85 71.98 0.64 -5.06 16 14 C -0.61 -36.83 8.62 25.60 0.22 -36.61 16 15 H 0.01 0.57 7.22 -2.92 -0.02 0.55 16 16 C -0.02 -1.36 5.34 84.66 0.45 -0.91 16 17 N -0.94 -61.02 13.69 21.45 0.29 -60.73 16 18 Si 1.08 47.60 26.45 68.60 1.81 49.42 16 19 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 20 H -0.22 -8.16 5.54 99.48 0.55 -7.61 16 21 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 22 C -0.03 -0.80 9.33 22.44 0.21 -0.59 16 23 C -0.16 -3.84 9.95 22.21 0.22 -3.62 16 24 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.08 1.05 6.32 -2.39 -0.02 1.03 16 28 H 0.05 0.78 6.86 -2.39 -0.02 0.77 16 29 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.16 2.86 5.38 -2.91 -0.02 2.85 16 32 H 0.12 4.01 7.64 -2.91 -0.02 3.98 16 33 H 0.07 2.76 4.88 -2.39 -0.01 2.75 16 34 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.25 16.67 8.73 -92.71 -0.81 15.86 16 37 H 0.15 3.91 6.45 -2.91 -0.02 3.89 16 38 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -77.89 310.95 5.80 -72.09 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.86 Total: 15.08 kcal Atomic # 6 Polarization: -44.40 SS G_CDS: 3.76 Total: -40.65 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.29 Total: -60.73 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.93 Total: -35.21 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.81 Total: 49.42 kcal Total: -77.89 5.80 -72.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037742930.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.822 kcal (2) G-P(sol) polarization free energy of solvation -77.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds