Wall clock time and date at job start Mon Mar 30 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.46904 * 2 1 4 4 C 1.34233 * 116.99700 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99812 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00015 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47265 * 300.00064 * 6 4 3 8 8 C 1.50706 * 109.46817 * 59.99941 * 6 4 3 9 9 H 1.07998 * 119.99629 * 239.99926 * 8 6 4 10 10 C 1.37875 * 119.99955 * 60.00497 * 8 6 4 11 11 N 1.31515 * 119.99932 * 359.97438 * 10 8 6 12 12 Si 1.86800 * 119.99908 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47474 * 89.99404 * 12 10 8 14 14 H 1.48504 * 109.47121 * 209.99526 * 12 10 8 15 15 H 1.48499 * 109.47026 * 329.99368 * 12 10 8 16 16 C 1.52997 * 109.47078 * 179.97438 * 6 4 3 17 17 C 1.50699 * 109.47078 * 180.02562 * 16 6 4 18 18 C 1.38237 * 120.00053 * 269.72717 * 17 16 6 19 19 C 1.38232 * 119.99541 * 179.76563 * 18 17 16 20 20 C 1.38231 * 120.00735 * 0.50510 * 19 18 17 21 21 C 1.38236 * 119.99610 * 359.75328 * 20 19 18 22 22 C 1.38234 * 119.99861 * 90.00124 * 17 16 6 23 23 H 1.08998 * 109.47383 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.46966 * 299.99821 * 1 2 3 25 25 H 1.08996 * 109.47558 * 59.99834 * 1 2 3 26 26 H 1.08999 * 109.46966 * 240.00179 * 2 1 3 27 27 H 1.09004 * 109.46961 * 120.00002 * 2 1 3 28 28 H 1.08992 * 109.47280 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46777 * 300.00321 * 7 6 4 30 30 H 1.09000 * 109.47140 * 59.99748 * 7 6 4 31 31 H 0.97003 * 119.99476 * 180.02562 * 11 10 8 32 32 H 1.09004 * 109.47261 * 300.00035 * 16 6 4 33 33 H 1.09002 * 109.47153 * 60.00207 * 16 6 4 34 34 H 1.07999 * 119.99929 * 359.97438 * 18 17 16 35 35 H 1.08006 * 119.99293 * 180.23381 * 19 18 17 36 36 H 1.07998 * 120.00532 * 179.72221 * 20 19 18 37 37 H 1.08000 * 120.00436 * 179.97438 * 21 20 19 38 38 H 1.08003 * 120.00069 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 3.4486 3.6851 -1.2485 8 6 3.4568 3.6724 1.2312 9 1 2.8827 4.5818 1.1329 10 6 3.7654 3.1838 2.4830 11 7 4.4643 2.0761 2.6026 12 14 3.1910 4.0952 4.0090 13 1 1.8546 3.5898 4.4138 14 1 4.1595 3.8724 5.1126 15 1 3.1023 5.5478 3.7140 16 6 5.4486 2.8573 -0.0001 17 6 6.0246 4.2498 0.0011 18 6 6.2941 4.8874 -1.1955 19 6 6.8179 6.1666 -1.1944 20 6 7.0821 6.8043 0.0033 21 6 6.8177 6.1647 1.1999 22 6 6.2889 4.8874 1.1988 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8649 4.6924 -1.2479 29 1 3.7841 3.1534 -2.1390 30 1 2.3601 3.7421 -1.2480 31 1 4.6811 1.7322 3.4834 32 1 5.7846 2.3247 0.8896 33 1 5.7845 2.3255 -0.8904 34 1 6.0921 4.3874 -2.1313 35 1 7.0249 6.6662 -2.1293 36 1 7.4956 7.8020 0.0041 37 1 7.0245 6.6627 2.1356 38 1 6.0829 4.3874 2.1337 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039187092.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:48 Heat of formation + Delta-G solvation = -77.693696 kcal Electronic energy + Delta-G solvation = -20504.593501 eV Core-core repulsion = 17504.569637 eV Total energy + Delta-G solvation = -3000.023863 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.41244 -38.42358 -35.76596 -34.53295 -31.87493 -31.09489 -30.16032 -29.89904 -25.71926 -25.22206 -23.43459 -21.80803 -21.67034 -20.41969 -18.85226 -17.17166 -15.85349 -15.71648 -15.43247 -14.74997 -14.71519 -14.28111 -14.18429 -13.34170 -13.04896 -12.72254 -12.56987 -12.38820 -12.21288 -11.84489 -11.72720 -11.36022 -11.13839 -11.08031 -10.94559 -10.78474 -10.65373 -10.44726 -10.06136 -9.99279 -9.74587 -9.52004 -9.37927 -8.82875 -8.44290 -8.14972 -7.77043 -6.14819 -4.25578 2.12906 2.19503 3.21899 3.30466 3.33744 3.79814 3.99525 4.32039 4.61599 5.14324 5.45304 5.54299 5.55041 5.60225 5.69297 5.75709 5.90311 6.00800 6.25014 6.27691 6.30102 6.30408 6.35071 6.39975 6.41513 6.65246 6.70996 6.79696 6.92044 7.11017 7.12012 7.17672 7.29201 7.50760 7.67049 7.75261 7.84223 7.94937 8.12690 8.73910 9.30923 9.40708 10.86424 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.008379 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.297521 B = 3340.784807 C = 4249.998425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.060 3.940 3 O -0.355 6.355 4 C 0.494 3.506 5 O -0.532 6.532 6 C 0.089 3.911 7 C -0.134 4.134 8 C -0.499 4.499 9 H 0.069 0.931 10 C 0.067 3.933 11 N -0.873 5.873 12 Si 0.888 3.112 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.269 1.269 16 C -0.065 4.065 17 C -0.029 4.029 18 C -0.129 4.129 19 C -0.133 4.133 20 C -0.143 4.143 21 C -0.132 4.132 22 C -0.084 4.084 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.031 0.969 30 H 0.052 0.948 31 H 0.266 0.734 32 H 0.111 0.889 33 H 0.038 0.962 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.725 2.829 -4.765 5.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 O -0.273 6.273 4 C 0.339 3.661 5 O -0.421 6.421 6 C 0.087 3.913 7 C -0.192 4.192 8 C -0.537 4.537 9 H 0.087 0.913 10 C -0.137 4.137 11 N -0.509 5.509 12 Si 0.716 3.284 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.194 1.194 16 C -0.103 4.103 17 C -0.029 4.029 18 C -0.148 4.148 19 C -0.151 4.151 20 C -0.161 4.161 21 C -0.150 4.150 22 C -0.102 4.102 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.129 0.871 33 H 0.057 0.943 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.445 2.385 -4.620 5.218 hybrid contribution -0.367 0.200 1.052 1.132 sum -0.811 2.585 -3.568 4.480 Atomic orbital electron populations 1.21737 0.94016 1.01659 1.03036 1.22682 0.94296 0.83268 1.01239 1.86572 1.26775 1.29054 1.84857 1.24706 0.78843 0.93501 0.69072 1.90459 1.60375 1.43996 1.47220 1.17975 0.91577 0.85987 0.95721 1.21884 1.00919 1.00426 0.95945 1.20823 1.34944 1.09512 0.88429 0.91331 1.25025 0.94538 0.94914 0.99223 1.69912 1.37018 1.19922 1.24087 0.86620 0.78779 0.80534 0.82517 1.20517 1.21009 1.19376 1.20586 0.94968 0.91517 1.03187 1.19902 0.94198 0.96667 0.92175 1.21050 1.00826 0.95155 0.97728 1.20903 1.01429 0.95547 0.97230 1.20873 1.02909 0.99361 0.92930 1.21084 1.00826 0.95832 0.97302 1.21187 0.95982 0.94133 0.98911 0.91453 0.91757 0.92063 0.92829 0.92234 0.91945 0.94967 0.92842 0.92388 0.87085 0.94314 0.87058 0.87385 0.87507 0.87310 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 10.29 37.16 0.38 -1.75 16 2 C 0.06 1.14 6.19 37.16 0.23 1.37 16 3 O -0.36 -8.23 10.04 -39.27 -0.39 -8.63 16 4 C 0.49 12.40 5.33 36.01 0.19 12.59 16 5 O -0.53 -14.35 15.68 -18.75 -0.29 -14.65 16 6 C 0.09 2.11 0.48 -156.81 -0.07 2.03 16 7 C -0.13 -2.75 7.77 37.16 0.29 -2.47 16 8 C -0.50 -12.61 6.50 -34.44 -0.22 -12.84 16 9 H 0.07 1.75 7.74 -52.49 -0.41 1.34 16 10 C 0.07 1.71 3.99 -17.82 -0.07 1.64 16 11 N -0.87 -23.45 10.37 55.43 0.57 -22.88 16 12 Si 0.89 20.31 29.54 -169.99 -5.02 15.29 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 C -0.06 -1.51 3.53 -27.88 -0.10 -1.61 16 17 C -0.03 -0.61 4.19 -104.62 -0.44 -1.05 16 18 C -0.13 -2.35 7.91 -39.58 -0.31 -2.67 16 19 C -0.13 -2.17 10.05 -39.59 -0.40 -2.56 16 20 C -0.14 -2.32 10.05 -39.58 -0.40 -2.72 16 21 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 22 C -0.08 -1.75 8.68 -39.58 -0.34 -2.09 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.06 1.23 6.19 -51.93 -0.32 0.91 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.05 1.07 8.11 -51.93 -0.42 0.65 16 31 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.11 2.91 5.97 -51.93 -0.31 2.60 16 33 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 34 H 0.11 1.85 8.04 -52.49 -0.42 1.43 16 35 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 36 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 37 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.13 2.83 6.94 -52.48 -0.36 2.46 16 LS Contribution 314.29 15.07 4.74 4.74 Total: -1.00 -28.59 314.29 -7.66 -36.25 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.60 Total: 4.77 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -1.66 Total: -14.89 kcal Atomic # 7 Polarization: -23.45 SS G_CDS: 0.57 Total: -22.88 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.69 Total: -23.27 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.59 -7.66 -36.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039187092.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.443 kcal (2) G-P(sol) polarization free energy of solvation -28.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds