Wall clock time and date at job start Mon Mar 30 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.46934 * 2 1 4 4 C 1.34227 * 117.00275 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99576 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00455 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.46970 * 60.00389 * 6 4 3 8 8 C 1.50702 * 109.47349 * 300.00159 * 6 4 3 9 9 H 1.08000 * 119.99924 * 119.99375 * 8 6 4 10 10 C 1.37868 * 120.00067 * 300.00137 * 8 6 4 11 11 N 1.31516 * 120.00053 * 359.97438 * 10 8 6 12 12 Si 1.86801 * 119.99991 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47142 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47187 * 120.00255 * 12 10 8 15 15 H 1.48502 * 109.46942 * 239.99557 * 12 10 8 16 16 C 1.52997 * 109.47196 * 180.02562 * 6 4 3 17 17 C 1.50706 * 109.47198 * 179.97438 * 16 6 4 18 18 C 1.38238 * 119.99775 * 90.00136 * 17 16 6 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38233 * 120.00212 * 270.02182 * 17 16 6 23 23 H 1.09000 * 109.47846 * 300.00214 * 1 2 3 24 24 H 1.09001 * 109.47444 * 60.00431 * 1 2 3 25 25 H 1.09004 * 109.47121 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47425 * 239.99970 * 2 1 3 27 27 H 1.08996 * 109.47020 * 119.99379 * 2 1 3 28 28 H 1.09002 * 109.47263 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.46885 * 299.99906 * 7 6 4 30 30 H 1.09002 * 109.47460 * 60.00263 * 7 6 4 31 31 H 0.97005 * 120.00362 * 180.02562 * 11 10 8 32 32 H 1.09003 * 109.47286 * 60.00345 * 16 6 4 33 33 H 1.09002 * 109.47284 * 299.99768 * 16 6 4 34 34 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 35 35 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 38 38 H 1.07999 * 119.99956 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 6 3.4485 3.6851 1.2486 8 6 3.4567 3.6725 -1.2311 9 1 2.8825 4.5819 -1.1328 10 6 3.7652 3.1840 -2.4829 11 7 4.4648 2.0768 -2.6026 12 14 3.1896 4.0948 -4.0089 13 1 2.4257 5.3028 -3.6057 14 1 4.3675 4.5003 -4.8172 15 1 2.3175 3.2050 -4.8169 16 6 5.4485 2.8574 0.0001 17 6 6.0245 4.2501 -0.0011 18 6 6.2886 4.8898 1.1956 19 6 6.8175 6.1669 1.1945 20 6 7.0827 6.8042 -0.0032 21 6 6.8136 6.1666 -1.1998 22 6 6.2883 4.8879 -1.1987 23 1 -0.3635 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.8647 4.6925 1.2480 29 1 2.3600 3.7421 1.2481 30 1 3.7841 3.1535 2.1391 31 1 4.6822 1.7333 -3.4834 32 1 5.7845 2.3250 -0.8897 33 1 5.7844 2.3257 0.8904 34 1 6.0818 4.3917 2.1314 35 1 7.0235 6.6669 2.1294 36 1 7.4963 7.8019 -0.0039 37 1 7.0168 6.6661 -2.1355 38 1 6.0812 4.3884 -2.1336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039187093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:50 Heat of formation + Delta-G solvation = -77.726955 kcal Electronic energy + Delta-G solvation = -20505.052581 eV Core-core repulsion = 17505.027276 eV Total energy + Delta-G solvation = -3000.025305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.41411 -38.42508 -35.76729 -34.53382 -31.87663 -31.09605 -30.16162 -29.89772 -25.72128 -25.22453 -23.43592 -21.80935 -21.67006 -20.42044 -18.85444 -17.17311 -15.85449 -15.71784 -15.43451 -14.74911 -14.71956 -14.28245 -14.18321 -13.34265 -13.05071 -12.72615 -12.57252 -12.38813 -12.21216 -11.84467 -11.72934 -11.36176 -11.14014 -11.09079 -10.95618 -10.78641 -10.61922 -10.45237 -10.06227 -9.99354 -9.74595 -9.52091 -9.38094 -8.82081 -8.45130 -8.15081 -7.77173 -6.15036 -4.25754 2.12790 2.19311 3.20204 3.30632 3.34921 3.79655 3.99417 4.31894 4.61421 5.14108 5.45220 5.54220 5.54974 5.60177 5.69238 5.75611 5.90285 6.00807 6.24926 6.27619 6.30054 6.30324 6.35059 6.39875 6.41447 6.65267 6.70877 6.79641 6.92029 7.10921 7.11940 7.17588 7.29250 7.50751 7.67009 7.75195 7.84112 7.94950 8.12583 8.74112 9.30813 9.40615 10.86209 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018950 B = 0.008380 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.192836 B = 3340.350215 C = 4249.399865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.060 3.940 3 O -0.355 6.355 4 C 0.494 3.506 5 O -0.532 6.532 6 C 0.088 3.912 7 C -0.134 4.134 8 C -0.499 4.499 9 H 0.069 0.931 10 C 0.066 3.934 11 N -0.873 5.873 12 Si 0.889 3.111 13 H -0.269 1.269 14 H -0.281 1.281 15 H -0.284 1.284 16 C -0.065 4.065 17 C -0.029 4.029 18 C -0.129 4.129 19 C -0.133 4.133 20 C -0.143 4.143 21 C -0.132 4.132 22 C -0.084 4.084 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.265 0.735 32 H 0.111 0.889 33 H 0.038 0.962 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 2.836 4.779 5.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 O -0.273 6.273 4 C 0.339 3.661 5 O -0.420 6.420 6 C 0.087 3.913 7 C -0.192 4.192 8 C -0.536 4.536 9 H 0.087 0.913 10 C -0.137 4.137 11 N -0.509 5.509 12 Si 0.716 3.284 13 H -0.194 1.194 14 H -0.207 1.207 15 H -0.210 1.210 16 C -0.103 4.103 17 C -0.030 4.030 18 C -0.147 4.147 19 C -0.151 4.151 20 C -0.161 4.161 21 C -0.150 4.150 22 C -0.103 4.103 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.129 0.871 33 H 0.057 0.943 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.467 2.393 4.637 5.239 hybrid contribution -0.349 0.195 -1.056 1.129 sum -0.816 2.588 3.581 4.493 Atomic orbital electron populations 1.21738 0.94011 1.01660 1.03036 1.22680 0.94298 0.83265 1.01242 1.86570 1.26775 1.29058 1.84855 1.24703 0.78846 0.93497 0.69080 1.90461 1.60373 1.43996 1.47212 1.17979 0.91580 0.85997 0.95739 1.21888 1.00924 1.00428 0.95942 1.20863 1.34865 1.09484 0.88415 0.91272 1.25027 0.94569 0.94900 0.99239 1.69920 1.37083 1.19949 1.23985 0.86552 0.78820 0.80076 0.82913 1.19354 1.20687 1.20973 1.20588 0.94962 0.91522 1.03191 1.19906 0.94212 0.96660 0.92174 1.21052 1.00787 0.95169 0.97733 1.20905 1.01394 0.95585 0.97231 1.20875 1.02898 0.99369 0.92928 1.21082 1.00838 0.95829 0.97300 1.21194 0.96017 0.94113 0.98927 0.92068 0.91748 0.91454 0.92231 0.92830 0.91939 0.92839 0.94966 0.92443 0.87080 0.94316 0.87054 0.87383 0.87506 0.87310 0.85617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.29 37.16 0.38 -1.75 16 2 C 0.06 1.14 6.19 37.16 0.23 1.37 16 3 O -0.36 -8.23 10.04 -39.25 -0.39 -8.62 16 4 C 0.49 12.39 5.33 36.00 0.19 12.59 16 5 O -0.53 -14.35 15.68 -18.75 -0.29 -14.64 16 6 C 0.09 2.10 0.48 -156.82 -0.07 2.02 16 7 C -0.13 -2.75 7.75 37.16 0.29 -2.47 16 8 C -0.50 -12.59 6.49 -34.44 -0.22 -12.81 16 9 H 0.07 1.77 7.74 -52.49 -0.41 1.36 16 10 C 0.07 1.70 3.99 -17.82 -0.07 1.63 16 11 N -0.87 -23.45 10.36 55.43 0.57 -22.87 16 12 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 13 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 16 C -0.07 -1.51 3.53 -27.88 -0.10 -1.61 16 17 C -0.03 -0.61 4.20 -104.62 -0.44 -1.05 16 18 C -0.13 -2.35 7.89 -39.58 -0.31 -2.66 16 19 C -0.13 -2.16 10.05 -39.58 -0.40 -2.56 16 20 C -0.14 -2.32 10.05 -39.58 -0.40 -2.71 16 21 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 22 C -0.08 -1.76 8.68 -39.58 -0.34 -2.10 16 23 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.20 8.13 -51.93 -0.42 0.77 16 27 H 0.05 0.96 8.13 -51.93 -0.42 0.54 16 28 H 0.06 1.23 6.18 -51.93 -0.32 0.91 16 29 H 0.05 1.07 8.11 -51.93 -0.42 0.65 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.11 2.92 5.97 -51.93 -0.31 2.61 16 33 H 0.04 0.87 8.04 -51.93 -0.42 0.45 16 34 H 0.11 1.85 8.03 -52.48 -0.42 1.43 16 35 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.13 2.85 6.94 -52.49 -0.36 2.48 16 LS Contribution 314.23 15.07 4.74 4.74 Total: -1.00 -28.57 314.23 -7.66 -36.24 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.60 Total: 4.74 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -1.66 Total: -14.89 kcal Atomic # 7 Polarization: -23.45 SS G_CDS: 0.57 Total: -22.87 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.69 Total: -23.26 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.57 -7.66 -36.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039187093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.489 kcal (2) G-P(sol) polarization free energy of solvation -28.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds