Wall clock time and date at job start Mon Mar 30 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45199 * 109.46934 * 2 1 4 4 C 1.34227 * 117.00275 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99576 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00455 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.46970 * 60.00389 * 6 4 3 8 8 C 1.50702 * 109.47349 * 300.00159 * 6 4 3 9 9 H 1.08000 * 119.99924 * 119.99375 * 8 6 4 10 10 C 1.37868 * 120.00067 * 300.00137 * 8 6 4 11 11 N 1.31516 * 120.00053 * 359.97438 * 10 8 6 12 12 Si 1.86801 * 119.99991 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47142 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47187 * 120.00255 * 12 10 8 15 15 H 1.48502 * 109.46942 * 239.99557 * 12 10 8 16 16 C 1.52997 * 109.47196 * 180.02562 * 6 4 3 17 17 C 1.50706 * 109.47198 * 179.97438 * 16 6 4 18 18 C 1.38238 * 119.99775 * 90.00136 * 17 16 6 19 19 C 1.38235 * 119.99712 * 179.97438 * 18 17 16 20 20 C 1.38234 * 120.00220 * 359.97124 * 19 18 17 21 21 C 1.38233 * 120.00037 * 0.28719 * 20 19 18 22 22 C 1.38233 * 120.00212 * 270.02182 * 17 16 6 23 23 H 1.09000 * 109.47846 * 300.00214 * 1 2 3 24 24 H 1.09001 * 109.47444 * 60.00431 * 1 2 3 25 25 H 1.09004 * 109.47121 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47425 * 239.99970 * 2 1 3 27 27 H 1.08996 * 109.47020 * 119.99379 * 2 1 3 28 28 H 1.09002 * 109.47263 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.46885 * 299.99906 * 7 6 4 30 30 H 1.09002 * 109.47460 * 60.00263 * 7 6 4 31 31 H 0.97005 * 120.00362 * 180.02562 * 11 10 8 32 32 H 1.09003 * 109.47286 * 60.00345 * 16 6 4 33 33 H 1.09002 * 109.47284 * 299.99768 * 16 6 4 34 34 H 1.08005 * 120.00068 * 359.97438 * 18 17 16 35 35 H 1.07999 * 119.99770 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.99744 * 180.02562 * 20 19 18 37 37 H 1.07998 * 120.00395 * 179.72811 * 21 20 19 38 38 H 1.07999 * 119.99956 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9375 0.0000 7 6 3.4485 3.6851 1.2486 8 6 3.4567 3.6725 -1.2311 9 1 2.8825 4.5819 -1.1328 10 6 3.7652 3.1840 -2.4829 11 7 4.4648 2.0768 -2.6026 12 14 3.1896 4.0948 -4.0089 13 1 2.4257 5.3028 -3.6057 14 1 4.3675 4.5003 -4.8172 15 1 2.3175 3.2050 -4.8169 16 6 5.4485 2.8574 0.0001 17 6 6.0245 4.2501 -0.0011 18 6 6.2886 4.8898 1.1956 19 6 6.8175 6.1669 1.1945 20 6 7.0827 6.8042 -0.0032 21 6 6.8136 6.1666 -1.1998 22 6 6.2883 4.8879 -1.1987 23 1 -0.3635 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.8647 4.6925 1.2480 29 1 2.3600 3.7421 1.2481 30 1 3.7841 3.1535 2.1391 31 1 4.6822 1.7333 -3.4834 32 1 5.7845 2.3250 -0.8897 33 1 5.7844 2.3257 0.8904 34 1 6.0818 4.3917 2.1314 35 1 7.0235 6.6669 2.1294 36 1 7.4963 7.8019 -0.0039 37 1 7.0168 6.6661 -2.1355 38 1 6.0812 4.3884 -2.1336 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039187093.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:50 Heat of formation + Delta-G solvation = -91.406199 kcal Electronic energy + Delta-G solvation = -20505.645757 eV Core-core repulsion = 17505.027276 eV Total energy + Delta-G solvation = -3000.618482 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.24421 -39.94121 -37.51476 -36.40608 -33.75858 -32.53824 -31.58570 -31.40442 -27.39424 -27.11187 -25.09008 -23.33931 -23.08767 -21.98400 -20.67660 -19.03442 -17.64718 -17.22693 -17.16881 -16.60867 -16.52090 -15.73890 -15.67287 -15.01563 -14.69355 -14.30188 -14.07012 -13.96130 -13.58143 -13.36079 -13.27817 -12.98892 -12.88311 -12.77698 -12.59676 -12.41739 -12.34454 -12.16442 -11.66940 -11.57188 -11.48334 -11.29078 -11.22906 -10.75537 -10.39884 -9.55031 -9.24371 -8.12052 -6.27453 0.72212 0.78454 1.35507 1.41214 1.50623 1.87926 2.28386 2.41568 3.14988 3.21596 4.05453 4.15022 4.22740 4.26052 4.37020 4.38760 4.45939 4.51579 4.62351 4.67949 4.80544 4.83600 4.91128 4.96232 5.06417 5.07869 5.20301 5.29636 5.36129 5.42865 5.49168 5.61883 5.79912 5.84410 5.90184 5.98123 6.07659 6.27921 6.43094 6.74438 7.36463 7.44377 8.87966 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.018950 B = 0.008380 C = 0.006588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.192836 B = 3340.350215 C = 4249.399865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.050 3.950 3 O -0.365 6.365 4 C 0.489 3.511 5 O -0.562 6.562 6 C 0.077 3.923 7 C -0.124 4.124 8 C -0.497 4.497 9 H 0.064 0.936 10 C 0.032 3.968 11 N -0.899 5.899 12 Si 0.936 3.064 13 H -0.262 1.262 14 H -0.278 1.278 15 H -0.288 1.288 16 C -0.054 4.054 17 C -0.052 4.052 18 C -0.133 4.133 19 C -0.124 4.124 20 C -0.134 4.134 21 C -0.137 4.137 22 C -0.110 4.110 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.101 0.899 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.260 0.740 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.125 0.875 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.127 0.873 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 4.979 6.138 7.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.024 4.024 3 O -0.282 6.282 4 C 0.335 3.665 5 O -0.453 6.453 6 C 0.076 3.924 7 C -0.182 4.182 8 C -0.535 4.535 9 H 0.082 0.918 10 C -0.169 4.169 11 N -0.537 5.537 12 Si 0.763 3.237 13 H -0.186 1.186 14 H -0.203 1.203 15 H -0.215 1.215 16 C -0.092 4.092 17 C -0.052 4.052 18 C -0.151 4.151 19 C -0.142 4.142 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.128 4.128 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.120 0.880 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.143 0.857 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.145 0.855 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.895 4.551 6.002 7.586 hybrid contribution -0.207 -0.479 -1.442 1.534 sum -1.102 4.072 4.560 6.212 Atomic orbital electron populations 1.21748 0.90138 1.04052 1.03403 1.23054 0.97331 0.81259 1.00734 1.86542 1.25736 1.31587 1.84379 1.25037 0.79350 0.93779 0.68323 1.90428 1.61157 1.44998 1.48687 1.18152 0.91952 0.85619 0.96704 1.21786 1.00955 1.00510 0.94900 1.20970 1.34247 1.09122 0.89157 0.91759 1.25552 0.94601 0.95323 1.01401 1.70072 1.38369 1.21374 1.23885 0.85812 0.78357 0.79228 0.80347 1.18588 1.20350 1.21481 1.20349 0.94876 0.93049 1.00953 1.19764 0.96127 0.95779 0.93559 1.21210 1.00703 0.96150 0.97022 1.21339 0.99341 0.94522 0.98996 1.21315 1.01206 1.00669 0.91950 1.21313 1.00245 0.94690 0.99262 1.21052 0.98375 0.95694 0.97719 0.90732 0.92279 0.88037 0.94197 0.91981 0.91114 0.92658 0.93452 0.93045 0.90950 0.94752 0.85709 0.83533 0.83705 0.85541 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 10.29 71.98 0.74 -2.97 16 2 C 0.05 1.91 6.19 71.98 0.45 2.36 16 3 O -0.37 -17.11 10.04 -51.39 -0.52 -17.63 16 4 C 0.49 25.16 5.33 71.23 0.38 25.54 16 5 O -0.56 -31.50 15.68 21.95 0.34 -31.15 16 6 C 0.08 3.72 0.48 -53.68 -0.03 3.70 16 7 C -0.12 -4.99 7.75 71.98 0.56 -4.43 16 8 C -0.50 -25.52 6.49 25.60 0.17 -25.35 16 9 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 10 C 0.03 1.69 3.99 84.65 0.34 2.03 16 11 N -0.90 -50.53 10.36 21.44 0.22 -50.31 16 12 Si 0.94 42.40 29.54 68.60 2.03 44.43 16 13 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 14 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 15 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 16 C -0.05 -2.61 3.53 29.85 0.11 -2.50 16 17 C -0.05 -2.19 4.20 -19.86 -0.08 -2.27 16 18 C -0.13 -4.55 7.89 22.27 0.18 -4.37 16 19 C -0.12 -3.53 10.05 22.27 0.22 -3.31 16 20 C -0.13 -3.80 10.05 22.27 0.22 -3.58 16 21 C -0.14 -4.67 10.05 22.27 0.22 -4.45 16 22 C -0.11 -4.63 8.68 22.27 0.19 -4.43 16 23 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.04 1.64 8.13 -2.39 -0.02 1.63 16 27 H 0.06 2.22 8.13 -2.39 -0.02 2.20 16 28 H 0.07 2.69 6.18 -2.39 -0.01 2.67 16 29 H 0.05 2.15 8.11 -2.39 -0.02 2.14 16 30 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 32 H 0.07 4.03 5.97 -2.39 -0.01 4.02 16 33 H 0.03 1.60 8.04 -2.39 -0.02 1.58 16 34 H 0.12 3.86 8.03 -2.91 -0.02 3.83 16 35 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 36 H 0.15 3.06 8.06 -2.91 -0.02 3.03 16 37 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.09 4.48 6.94 -2.91 -0.02 4.46 16 Total: -1.00 -64.03 314.23 6.77 -57.25 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 1.03 Total: 21.45 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 3.66 Total: -24.04 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.22 Total: -50.31 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -0.17 Total: -48.78 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -64.03 6.77 -57.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039187093.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.152 kcal (2) G-P(sol) polarization free energy of solvation -64.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds