Wall clock time and date at job start Mon Mar 30 2020 06:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47183 * 2 1 4 4 O 1.42895 * 109.47416 * 120.00462 * 2 1 3 5 5 C 1.35916 * 116.99953 * 155.70354 * 4 2 1 6 6 C 1.38891 * 119.97037 * 5.29471 * 5 4 2 7 7 C 1.38299 * 120.29191 * 179.97438 * 6 5 4 8 8 C 1.37927 * 120.23695 * 0.02562 * 7 6 5 9 9 C 1.39837 * 119.93540 * 359.97438 * 8 7 6 10 10 C 1.47188 * 120.14460 * 179.97438 * 9 8 7 11 11 O 1.21256 * 119.99687 * 180.02562 * 10 9 8 12 12 C 1.50693 * 120.00039 * 0.02562 * 10 9 8 13 13 H 1.09002 * 109.47113 * 34.99760 * 12 10 9 14 14 C 1.53006 * 109.46856 * 274.99854 * 12 10 9 15 15 C 1.50701 * 109.47540 * 154.99659 * 12 10 9 16 16 H 1.08001 * 119.99750 * 35.15736 * 15 12 10 17 17 C 1.37871 * 120.00127 * 215.16067 * 15 12 10 18 18 N 1.31512 * 119.99819 * 182.42484 * 17 15 12 19 19 Si 1.86801 * 120.00364 * 2.41829 * 17 15 12 20 20 H 1.48500 * 109.46835 * 84.81965 * 19 17 15 21 21 H 1.48492 * 109.47303 * 204.82749 * 19 17 15 22 22 H 1.48499 * 109.46646 * 324.82635 * 19 17 15 23 23 C 1.38385 * 119.96895 * 185.31613 * 5 4 2 24 24 H 1.09003 * 109.47178 * 299.99578 * 1 2 3 25 25 H 1.08995 * 109.47768 * 59.99531 * 1 2 3 26 26 H 1.08996 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47178 * 240.00422 * 2 1 3 28 28 H 1.09004 * 109.47142 * 300.00257 * 3 2 1 29 29 H 1.08997 * 109.46982 * 60.00459 * 3 2 1 30 30 H 1.09001 * 109.47159 * 180.02562 * 3 2 1 31 31 H 1.08000 * 119.85821 * 0.02562 * 6 5 4 32 32 H 1.08002 * 119.87691 * 180.02562 * 7 6 5 33 33 H 1.07999 * 120.03550 * 179.70267 * 8 7 6 34 34 H 1.08996 * 109.47084 * 64.12356 * 14 12 10 35 35 H 1.09000 * 109.46866 * 184.12162 * 14 12 10 36 36 H 1.08998 * 109.46780 * 304.12112 * 14 12 10 37 37 H 0.97005 * 120.00056 * 180.02562 * 18 17 15 38 38 H 1.07996 * 120.11883 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2527 -1.2121 1.1026 6 6 4.0435 -0.9996 -0.0193 7 6 5.3128 -1.5438 -0.0912 8 6 5.8033 -2.3027 0.9508 9 6 5.0154 -2.5229 2.0850 10 6 5.5340 -3.3324 3.1995 11 8 4.8483 -3.5220 4.1814 12 6 6.9170 -3.9256 3.1201 13 1 7.5766 -3.2397 2.5885 14 6 6.8578 -5.2591 2.3721 15 6 7.4464 -4.1538 4.5125 16 1 6.7744 -4.4522 5.3035 17 6 8.7886 -3.9816 4.7765 18 7 9.2588 -4.2268 5.9799 19 14 9.9394 -3.4002 3.4247 20 1 9.9057 -1.9175 3.3498 21 1 11.3225 -3.8495 3.7249 22 1 9.5045 -3.9715 2.1249 23 6 3.7324 -1.9719 2.1550 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 3.6658 -0.4060 -0.8387 32 1 5.9222 -1.3740 -0.9666 33 1 6.7932 -2.7302 0.8892 34 1 6.5448 -5.0846 1.3427 35 1 7.8440 -5.7232 2.3782 36 1 6.1424 -5.9192 2.8625 37 1 10.2031 -4.1053 6.1658 38 1 3.1183 -2.1377 3.0278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040666509.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:01 Heat of formation + Delta-G solvation = -60.808271 kcal Electronic energy + Delta-G solvation = -19346.668030 eV Core-core repulsion = 16347.376374 eV Total energy + Delta-G solvation = -2999.291656 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.35647 -38.85479 -36.98799 -33.79495 -33.38098 -31.54648 -30.75985 -29.55420 -27.56920 -25.27481 -24.64821 -22.84911 -22.01951 -20.87176 -19.07791 -17.60358 -17.02721 -16.21159 -15.76444 -15.57102 -14.95748 -14.78460 -14.08337 -13.97697 -13.56130 -13.46392 -13.34477 -12.95118 -12.63621 -12.49757 -12.39776 -12.28098 -11.87710 -11.61735 -11.54259 -11.28391 -11.13780 -10.86512 -10.76443 -10.70172 -10.29241 -9.82336 -9.12704 -8.83905 -8.70154 -8.50285 -8.14466 -6.08456 -4.09237 0.98039 1.53882 3.04277 3.09495 3.25197 3.30785 3.33751 4.08677 4.37444 4.48518 4.61438 4.68911 4.78260 4.87243 5.05919 5.19473 5.22902 5.26641 5.40711 5.43319 5.46189 5.57422 5.58907 5.80754 5.87396 6.04415 6.14683 6.19854 6.33754 6.44004 6.54189 6.55892 6.61997 6.76113 6.97130 7.20182 7.43731 7.60868 8.39452 8.57752 9.05656 9.50909 11.04645 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033894 B = 0.004591 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.898724 B = 6097.216035 C = 6400.213549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 C -0.182 4.182 4 O -0.311 6.311 5 C 0.115 3.885 6 C -0.194 4.194 7 C -0.096 4.096 8 C -0.112 4.112 9 C -0.114 4.114 10 C 0.400 3.600 11 O -0.444 6.444 12 C -0.026 4.026 13 H 0.053 0.947 14 C -0.131 4.131 15 C -0.508 4.508 16 H 0.087 0.913 17 C 0.073 3.927 18 N -0.895 5.895 19 Si 0.869 3.131 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.262 1.262 23 C -0.103 4.103 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.136 0.864 34 H 0.029 0.971 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.265 0.735 38 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.150 9.066 -17.246 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.020 3.980 3 C -0.239 4.239 4 O -0.225 6.225 5 C 0.070 3.930 6 C -0.213 4.213 7 C -0.114 4.114 8 C -0.130 4.130 9 C -0.115 4.115 10 C 0.276 3.724 11 O -0.317 6.317 12 C -0.045 4.045 13 H 0.071 0.929 14 C -0.189 4.189 15 C -0.545 4.545 16 H 0.105 0.895 17 C -0.129 4.129 18 N -0.532 5.532 19 Si 0.696 3.304 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.187 1.187 23 C -0.122 4.122 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.154 0.846 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -12.487 8.960 -16.430 22.498 hybrid contribution 0.898 0.544 -0.947 1.414 sum -11.590 9.504 -17.377 22.948 Atomic orbital electron populations 1.21846 0.92535 1.03215 1.02959 1.22406 0.95381 0.92608 0.87613 1.22405 1.02361 0.96069 1.03064 1.86145 1.28925 1.68767 1.38672 1.18835 0.84763 0.94667 0.94708 1.21391 0.96175 1.05223 0.98473 1.20893 0.94902 0.96934 0.98657 1.21512 1.00364 0.98384 0.92735 1.20961 0.93864 0.99489 0.97193 1.23172 0.89774 0.76269 0.83183 1.90397 1.58959 1.51091 1.31296 1.19552 0.91006 0.94518 0.99435 0.92875 1.21895 1.01910 0.98238 0.96903 1.20856 0.94185 1.46746 0.92734 0.89547 1.25034 0.97834 0.94766 0.95287 1.69888 1.14436 1.48566 1.20327 0.86978 0.80563 0.79710 0.83165 1.19938 1.21216 1.18662 1.20727 0.95887 0.97321 0.98272 0.91409 0.90647 0.91597 0.90982 0.91147 0.91345 0.91687 0.85409 0.85493 0.84642 0.95162 0.92310 0.93128 0.92501 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.56 37.15 0.36 -0.75 16 2 C 0.08 0.71 2.85 -26.73 -0.08 0.64 16 3 C -0.18 -1.48 9.15 37.16 0.34 -1.14 16 4 O -0.31 -4.18 9.80 -19.48 -0.19 -4.37 16 5 C 0.11 1.69 6.58 -39.29 -0.26 1.43 16 6 C -0.19 -2.42 8.21 -39.32 -0.32 -2.75 16 7 C -0.10 -1.23 10.02 -39.67 -0.40 -1.63 16 8 C -0.11 -1.76 9.36 -39.10 -0.37 -2.12 16 9 C -0.11 -2.11 5.87 -105.08 -0.62 -2.73 16 10 C 0.40 9.01 6.22 -30.68 -0.19 8.82 16 11 O -0.44 -11.31 15.92 5.58 0.09 -11.22 16 12 C -0.03 -0.60 1.55 -92.92 -0.14 -0.75 16 13 H 0.05 1.18 4.00 -51.93 -0.21 0.98 16 14 C -0.13 -2.71 9.16 37.16 0.34 -2.37 16 15 C -0.51 -14.54 8.55 -34.44 -0.29 -14.84 16 16 H 0.09 2.80 7.51 -52.49 -0.39 2.40 16 17 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 18 N -0.89 -27.47 13.96 55.43 0.77 -26.70 16 19 Si 0.87 20.69 26.92 -169.99 -4.58 16.12 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.26 -5.72 6.91 56.52 0.39 -5.33 16 23 C -0.10 -1.79 9.54 -38.94 -0.37 -2.16 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.61 6.34 -51.93 -0.33 0.28 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.58 6.84 -51.93 -0.36 0.22 16 31 H 0.13 1.23 5.38 -52.49 -0.28 0.95 16 32 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 33 H 0.14 2.05 6.47 -52.49 -0.34 1.71 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.14 2.49 7.65 -52.49 -0.40 2.08 16 LS Contribution 315.51 15.07 4.75 4.75 Total: -1.00 -32.48 315.51 -6.51 -38.99 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.26 Total: 0.77 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: -2.10 Total: -18.35 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.77 Total: -26.70 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.10 Total: -15.59 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.58 Total: 16.12 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.48 -6.51 -38.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040666509.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.815 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds