Wall clock time and date at job start Mon Mar 30 2020 06:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47183 * 2 1 4 4 O 1.42895 * 109.47416 * 120.00462 * 2 1 3 5 5 C 1.35916 * 116.99953 * 155.70354 * 4 2 1 6 6 C 1.38891 * 119.97037 * 5.29471 * 5 4 2 7 7 C 1.38299 * 120.29191 * 179.97438 * 6 5 4 8 8 C 1.37927 * 120.23695 * 0.02562 * 7 6 5 9 9 C 1.39837 * 119.93540 * 359.97438 * 8 7 6 10 10 C 1.47188 * 120.14460 * 179.97438 * 9 8 7 11 11 O 1.21256 * 119.99687 * 180.02562 * 10 9 8 12 12 C 1.50693 * 120.00039 * 0.02562 * 10 9 8 13 13 H 1.09002 * 109.47113 * 34.99760 * 12 10 9 14 14 C 1.53006 * 109.46856 * 274.99854 * 12 10 9 15 15 C 1.50701 * 109.47540 * 154.99659 * 12 10 9 16 16 H 1.08001 * 119.99750 * 35.15736 * 15 12 10 17 17 C 1.37871 * 120.00127 * 215.16067 * 15 12 10 18 18 N 1.31512 * 119.99819 * 182.42484 * 17 15 12 19 19 Si 1.86801 * 120.00364 * 2.41829 * 17 15 12 20 20 H 1.48500 * 109.46835 * 84.81965 * 19 17 15 21 21 H 1.48492 * 109.47303 * 204.82749 * 19 17 15 22 22 H 1.48499 * 109.46646 * 324.82635 * 19 17 15 23 23 C 1.38385 * 119.96895 * 185.31613 * 5 4 2 24 24 H 1.09003 * 109.47178 * 299.99578 * 1 2 3 25 25 H 1.08995 * 109.47768 * 59.99531 * 1 2 3 26 26 H 1.08996 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47178 * 240.00422 * 2 1 3 28 28 H 1.09004 * 109.47142 * 300.00257 * 3 2 1 29 29 H 1.08997 * 109.46982 * 60.00459 * 3 2 1 30 30 H 1.09001 * 109.47159 * 180.02562 * 3 2 1 31 31 H 1.08000 * 119.85821 * 0.02562 * 6 5 4 32 32 H 1.08002 * 119.87691 * 180.02562 * 7 6 5 33 33 H 1.07999 * 120.03550 * 179.70267 * 8 7 6 34 34 H 1.08996 * 109.47084 * 64.12356 * 14 12 10 35 35 H 1.09000 * 109.46866 * 184.12162 * 14 12 10 36 36 H 1.08998 * 109.46780 * 304.12112 * 14 12 10 37 37 H 0.97005 * 120.00056 * 180.02562 * 18 17 15 38 38 H 1.07996 * 120.11883 * 359.97438 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 3.2527 -1.2121 1.1026 6 6 4.0435 -0.9996 -0.0193 7 6 5.3128 -1.5438 -0.0912 8 6 5.8033 -2.3027 0.9508 9 6 5.0154 -2.5229 2.0850 10 6 5.5340 -3.3324 3.1995 11 8 4.8483 -3.5220 4.1814 12 6 6.9170 -3.9256 3.1201 13 1 7.5766 -3.2397 2.5885 14 6 6.8578 -5.2591 2.3721 15 6 7.4464 -4.1538 4.5125 16 1 6.7744 -4.4522 5.3035 17 6 8.7886 -3.9816 4.7765 18 7 9.2588 -4.2268 5.9799 19 14 9.9394 -3.4002 3.4247 20 1 9.9057 -1.9175 3.3498 21 1 11.3225 -3.8495 3.7249 22 1 9.5045 -3.9715 2.1249 23 6 3.7324 -1.9719 2.1550 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 3.6658 -0.4060 -0.8387 32 1 5.9222 -1.3740 -0.9666 33 1 6.7932 -2.7302 0.8892 34 1 6.5448 -5.0846 1.3427 35 1 7.8440 -5.7232 2.3782 36 1 6.1424 -5.9192 2.8625 37 1 10.2031 -4.1053 6.1658 38 1 3.1183 -2.1377 3.0278 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040666509.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:01 Heat of formation + Delta-G solvation = -81.435092 kcal Electronic energy + Delta-G solvation = -19347.562476 eV Core-core repulsion = 16347.376374 eV Total energy + Delta-G solvation = -3000.186102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.136 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.48284 -40.36357 -38.22928 -35.73839 -34.21675 -33.48492 -32.04548 -30.71628 -28.18141 -27.28728 -26.09434 -24.04209 -23.20943 -22.09519 -20.35764 -19.25538 -18.75206 -17.34978 -17.10850 -16.60628 -16.37978 -16.26324 -15.60746 -15.46524 -14.82493 -14.65408 -14.53687 -14.39096 -14.13493 -13.63970 -13.36219 -13.15720 -13.09992 -12.98684 -12.82938 -12.58854 -12.58151 -12.32030 -12.13783 -11.75817 -11.71651 -11.57696 -11.20092 -10.78113 -10.33712 -10.04024 -9.24527 -8.29088 -6.38151 -0.32250 0.41411 1.37051 1.40251 1.51413 1.58210 2.15986 2.36468 2.80707 3.02815 3.30210 3.76487 3.88853 3.96427 4.02325 4.11930 4.19930 4.27304 4.38332 4.43574 4.59703 4.70692 4.75197 4.81527 4.83514 4.87810 4.89481 4.96710 5.13617 5.17822 5.26822 5.30003 5.33961 5.41930 5.51271 5.57943 5.72593 6.25699 6.46373 6.71552 6.79325 7.26686 8.88722 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.033894 B = 0.004591 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.898724 B = 6097.216035 C = 6400.213549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.064 3.936 3 C -0.179 4.179 4 O -0.332 6.332 5 C 0.115 3.885 6 C -0.174 4.174 7 C -0.079 4.079 8 C -0.114 4.114 9 C -0.139 4.139 10 C 0.398 3.602 11 O -0.499 6.499 12 C -0.029 4.029 13 H 0.077 0.923 14 C -0.126 4.126 15 C -0.524 4.524 16 H 0.021 0.979 17 C 0.007 3.993 18 N -0.952 5.952 19 Si 0.944 3.056 20 H -0.261 1.261 21 H -0.285 1.285 22 H -0.218 1.218 23 C -0.128 4.128 24 H 0.059 0.941 25 H 0.104 0.896 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.167 0.833 32 H 0.175 0.825 33 H 0.147 0.853 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.033 0.967 37 H 0.268 0.732 38 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.579 11.143 -22.959 28.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.009 3.991 3 C -0.237 4.237 4 O -0.247 6.247 5 C 0.070 3.930 6 C -0.192 4.192 7 C -0.097 4.097 8 C -0.132 4.132 9 C -0.140 4.140 10 C 0.278 3.722 11 O -0.376 6.376 12 C -0.048 4.048 13 H 0.095 0.905 14 C -0.184 4.184 15 C -0.562 4.562 16 H 0.039 0.961 17 C -0.190 4.190 18 N -0.591 5.591 19 Si 0.765 3.235 20 H -0.186 1.186 21 H -0.211 1.211 22 H -0.140 1.140 23 C -0.147 4.147 24 H 0.078 0.922 25 H 0.123 0.877 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.184 0.816 32 H 0.192 0.808 33 H 0.165 0.835 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.077 0.923 38 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.948 11.036 -22.175 27.501 hybrid contribution 0.547 -0.050 0.852 1.013 sum -11.401 10.986 -21.324 26.559 Atomic orbital electron populations 1.21897 0.91376 1.03171 1.04017 1.22829 0.96413 0.93130 0.86720 1.22408 1.01996 0.95254 1.03993 1.86149 1.28405 1.68956 1.41177 1.18831 0.85644 0.93978 0.94520 1.21847 0.95582 1.03781 0.98036 1.21376 0.95018 0.94511 0.98795 1.21698 1.00425 0.98863 0.92242 1.20513 0.95142 1.01206 0.97179 1.23459 0.89244 0.75801 0.83737 1.90376 1.60121 1.53388 1.33723 1.19584 0.91895 0.96682 0.96649 0.90501 1.21797 1.01808 0.95993 0.98814 1.21011 0.93903 1.46981 0.94261 0.96080 1.26150 0.99803 0.94514 0.98515 1.70085 1.15135 1.50387 1.23539 0.85789 0.77154 0.79766 0.80803 1.18596 1.21108 1.14028 1.20595 0.95830 0.99377 0.98938 0.92208 0.87726 0.92230 0.89205 0.88270 0.92457 0.92147 0.81570 0.80810 0.83513 0.90626 0.92089 0.94799 0.92299 0.87056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.56 71.98 0.69 -1.14 16 2 C 0.06 1.00 2.85 30.59 0.09 1.09 16 3 C -0.18 -2.28 9.15 71.98 0.66 -1.62 16 4 O -0.33 -8.50 9.80 -92.61 -0.91 -9.41 16 5 C 0.12 3.19 6.58 22.46 0.15 3.34 16 6 C -0.17 -3.50 8.21 22.44 0.18 -3.32 16 7 C -0.08 -1.57 10.02 22.21 0.22 -1.35 16 8 C -0.11 -3.16 9.36 22.58 0.21 -2.95 16 9 C -0.14 -5.13 5.87 -20.16 -0.12 -5.25 16 10 C 0.40 18.68 6.22 28.04 0.17 18.85 16 11 O -0.50 -27.74 15.92 -2.96 -0.05 -27.79 16 12 C -0.03 -1.36 1.55 -12.29 -0.02 -1.38 16 13 H 0.08 3.23 4.00 -2.39 -0.01 3.22 16 14 C -0.13 -5.06 9.16 71.98 0.66 -4.40 16 15 C -0.52 -31.68 8.55 25.60 0.22 -31.46 16 16 H 0.02 1.49 7.51 -2.91 -0.02 1.47 16 17 C 0.01 0.40 5.47 84.65 0.46 0.87 16 18 N -0.95 -61.34 13.96 21.44 0.30 -61.04 16 19 Si 0.94 41.74 26.92 68.60 1.85 43.59 16 20 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 21 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.22 -8.09 6.91 99.48 0.69 -7.40 16 23 C -0.13 -4.56 9.54 22.68 0.22 -4.34 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.09 1.08 6.34 -2.39 -0.02 1.06 16 28 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.83 6.84 -2.39 -0.02 0.81 16 31 H 0.17 2.08 5.38 -2.91 -0.02 2.07 16 32 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.15 3.69 6.47 -2.91 -0.02 3.67 16 34 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.03 1.42 8.14 -2.39 -0.02 1.41 16 37 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 38 H 0.11 4.41 7.65 -2.91 -0.02 4.39 16 Total: -1.00 -79.60 315.51 6.02 -73.59 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 1.03 Total: 14.13 kcal Atomic # 6 Polarization: -36.86 SS G_CDS: 3.80 Total: -33.06 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: 0.30 Total: -61.04 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -0.95 Total: -37.20 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.85 Total: 43.59 kcal Total: -79.60 6.02 -73.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040666509.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.850 kcal (2) G-P(sol) polarization free energy of solvation -79.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds