Wall clock time and date at job start Mon Mar 30 2020 06:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38877 * 120.00285 * 2 1 4 4 C 1.38962 * 120.17178 * 354.74197 * 3 2 1 5 5 C 1.37956 * 120.05936 * 180.25324 * 4 3 2 6 6 C 1.38616 * 120.42411 * 359.44952 * 5 4 3 7 7 C 1.50700 * 119.82349 * 180.27633 * 6 5 4 8 8 C 1.37752 * 120.35025 * 0.55365 * 6 5 4 9 9 C 1.39739 * 119.92588 * 359.72351 * 8 6 5 10 10 C 1.47431 * 120.20317 * 179.97438 * 9 8 6 11 11 O 1.21603 * 119.99914 * 127.56957 * 10 9 8 12 12 N 1.34780 * 120.00185 * 307.56183 * 10 9 8 13 13 C 1.46505 * 119.99689 * 3.99663 * 12 10 9 14 14 C 1.46494 * 120.00111 * 184.00053 * 12 10 9 15 15 C 1.50703 * 109.46942 * 89.99890 * 14 12 10 16 16 H 1.07992 * 120.00459 * 0.02562 * 15 14 12 17 17 C 1.37879 * 119.99733 * 179.97438 * 15 14 12 18 18 N 1.31523 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00035 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47310 * 89.99725 * 19 17 15 21 21 H 1.48503 * 109.46805 * 210.00022 * 19 17 15 22 22 H 1.48494 * 109.46866 * 329.99561 * 19 17 15 23 23 H 1.08995 * 109.47385 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47004 * 300.00651 * 1 2 3 25 25 H 1.09005 * 109.46670 * 60.00221 * 1 2 3 26 26 H 0.96996 * 119.99634 * 179.97438 * 2 1 3 27 27 H 1.07997 * 119.96822 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.78611 * 179.70422 * 5 4 3 29 29 H 1.08993 * 109.46926 * 270.27382 * 7 6 5 30 30 H 1.09004 * 109.46903 * 30.27967 * 7 6 5 31 31 H 1.09000 * 109.46984 * 150.27223 * 7 6 5 32 32 H 1.07993 * 120.03369 * 179.74664 * 8 6 5 33 33 H 1.09001 * 109.46636 * 84.55103 * 13 12 10 34 34 H 1.08999 * 109.46983 * 204.55119 * 13 12 10 35 35 H 1.08995 * 109.47432 * 324.55359 * 13 12 10 36 36 H 1.08998 * 109.46974 * 209.99960 * 14 12 10 37 37 H 1.08997 * 109.47324 * 330.00110 * 14 12 10 38 38 H 0.97004 * 119.99542 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1595 1.2027 0.0000 4 6 1.4727 2.4057 -0.1101 5 6 2.1653 3.5988 -0.1151 6 6 3.5466 3.6091 0.0007 7 6 4.2890 4.9206 -0.0001 8 6 4.2447 2.4267 0.1107 9 6 3.5584 1.2095 0.1116 10 6 4.2995 -0.0597 0.2285 11 8 3.9862 -0.8706 1.0788 12 7 5.3241 -0.3212 -0.6072 13 6 5.7579 0.6910 -1.5734 14 6 6.0039 -1.6176 -0.5493 15 6 5.3242 -2.5834 -1.4855 16 1 4.4715 -2.2635 -2.0658 17 6 5.7917 -3.8753 -1.6019 18 7 6.8305 -4.2648 -0.8955 19 14 4.9497 -5.0723 -2.7628 20 1 5.5804 -4.9873 -4.1045 21 1 5.0900 -6.4538 -2.2365 22 1 3.5094 -4.7274 -2.8702 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.9499 -0.8400 0.0004 27 1 0.3962 2.4064 -0.1963 28 1 1.6274 4.5310 -0.2057 29 1 4.5498 5.1898 -1.0235 30 1 3.6558 5.6968 0.4298 31 1 5.1982 4.8237 0.5931 32 1 5.3211 2.4405 0.1965 33 1 6.4537 1.3781 -1.0920 34 1 6.2519 0.2030 -2.4136 35 1 4.8909 1.2448 -1.9334 36 1 7.0453 -1.4953 -0.8467 37 1 5.9598 -2.0060 0.4681 38 1 7.1592 -5.1738 -0.9772 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052999929.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:53 Heat of formation + Delta-G solvation = -10.924698 kcal Electronic energy + Delta-G solvation = -19834.639786 eV Core-core repulsion = 16869.803995 eV Total energy + Delta-G solvation = -2964.835791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.00332 -37.96960 -35.86129 -34.65683 -32.68964 -31.42671 -30.86707 -27.75408 -27.11307 -25.89990 -24.69327 -23.84992 -22.12683 -20.75697 -18.65086 -17.19607 -16.50605 -16.44212 -15.89782 -15.30132 -14.53137 -14.33255 -14.08696 -14.04108 -13.78395 -13.59746 -13.46211 -12.75861 -12.44788 -12.19674 -12.03071 -11.97914 -11.83926 -11.73595 -11.43874 -11.19278 -10.95535 -10.86730 -10.58125 -10.17460 -9.77807 -9.64799 -8.97750 -8.63557 -8.44589 -7.62897 -7.12835 -6.05552 -4.10736 1.39833 1.76202 3.28354 3.34456 3.37209 3.44407 3.70639 3.92085 4.19556 4.43223 4.94816 5.06306 5.12525 5.21326 5.28379 5.36807 5.48535 5.51698 5.66252 5.69291 5.73106 5.79717 5.82678 5.97362 6.04603 6.14231 6.29338 6.40855 6.48367 6.79101 7.00114 7.07924 7.44236 7.52432 7.55830 7.90983 7.92328 8.22224 8.43706 8.88378 9.09462 9.54463 11.02363 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022533 B = 0.005900 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.329096 B = 4744.634251 C = 5509.696797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.738 5.738 3 C 0.256 3.744 4 C -0.205 4.205 5 C -0.059 4.059 6 C -0.161 4.161 7 C -0.101 4.101 8 C -0.041 4.041 9 C -0.194 4.194 10 C 0.554 3.446 11 O -0.545 6.545 12 N -0.594 5.594 13 C 0.084 3.916 14 C 0.243 3.757 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.061 3.939 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.275 1.275 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.414 0.586 27 H 0.122 0.878 28 H 0.118 0.882 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.124 0.876 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.033 0.967 37 H 0.045 0.955 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.511 16.007 -0.658 18.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.367 5.367 3 C 0.148 3.852 4 C -0.228 4.228 5 C -0.078 4.078 6 C -0.163 4.163 7 C -0.158 4.158 8 C -0.060 4.060 9 C -0.202 4.202 10 C 0.341 3.659 11 O -0.424 6.424 12 N -0.325 5.325 13 C -0.060 4.060 14 C 0.124 3.876 15 C -0.566 4.566 16 H 0.075 0.925 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.726 3.274 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.200 1.200 23 H 0.092 0.908 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.251 0.749 27 H 0.140 0.860 28 H 0.136 0.864 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.745 15.370 -0.188 17.684 hybrid contribution -0.233 -1.068 -0.745 1.323 sum -8.978 14.302 -0.933 16.912 Atomic orbital electron populations 1.21540 0.80447 1.02525 1.00670 1.44572 1.05803 1.06458 1.79854 1.17668 0.89656 0.86700 0.91196 1.20509 0.99464 0.90906 1.11911 1.20781 0.93445 0.97008 0.96551 1.19486 0.93758 0.94883 1.08161 1.20616 0.99589 0.93916 1.01670 1.20940 0.99314 0.90390 0.95369 1.19600 0.92236 0.94645 1.13702 1.18059 0.80518 0.85569 0.81757 1.90743 1.67242 1.48967 1.35427 1.48099 1.32891 1.17299 1.34168 1.21725 0.99415 0.91681 0.93182 1.19331 0.91866 0.77506 0.98890 1.21422 1.14882 0.96011 1.24258 0.92536 1.24938 0.95082 0.98004 0.96042 1.69940 1.24306 1.18461 1.40533 0.86498 0.79854 0.80317 0.80740 1.20610 1.21070 1.19994 0.90786 0.93014 0.93078 0.74872 0.86017 0.86374 0.91944 0.92238 0.92073 0.85776 0.93809 0.90838 0.92156 0.94906 0.93650 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.09 9.96 59.85 0.60 1.69 16 2 N -0.74 -12.15 5.71 -65.20 -0.37 -12.53 16 3 C 0.26 4.25 6.64 -83.61 -0.56 3.70 16 4 C -0.21 -2.77 9.30 -39.42 -0.37 -3.14 16 5 C -0.06 -0.72 9.68 -39.55 -0.38 -1.10 16 6 C -0.16 -2.04 5.87 -104.66 -0.61 -2.65 16 7 C -0.10 -0.96 10.00 36.01 0.36 -0.60 16 8 C -0.04 -0.62 7.55 -39.20 -0.30 -0.91 16 9 C -0.19 -3.51 4.77 -104.80 -0.50 -4.01 16 10 C 0.55 12.31 6.51 -12.52 -0.08 12.23 16 11 O -0.54 -14.12 15.40 5.28 0.08 -14.04 16 12 N -0.59 -13.18 2.86 -184.23 -0.53 -13.70 16 13 C 0.08 1.45 9.13 59.85 0.55 1.99 16 14 C 0.24 6.47 5.17 -5.20 -0.03 6.45 16 15 C -0.53 -14.99 9.39 -34.44 -0.32 -15.31 16 16 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 19 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.55 8.12 -51.93 -0.42 0.13 16 25 H 0.05 0.52 7.74 -51.93 -0.40 0.12 16 26 H 0.41 7.96 6.92 -40.82 -0.28 7.68 16 27 H 0.12 1.37 6.72 -52.49 -0.35 1.02 16 28 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 32 H 0.12 1.74 6.66 -52.49 -0.35 1.39 16 33 H 0.04 0.64 7.19 -51.93 -0.37 0.27 16 34 H 0.07 1.27 8.03 -51.93 -0.42 0.85 16 35 H 0.06 0.95 6.46 -51.93 -0.34 0.62 16 36 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 37 H 0.05 1.36 7.37 -51.93 -0.38 0.97 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -32.94 317.43 -7.45 -40.38 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.39 Total: 4.18 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.74 Total: -0.01 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.16 Total: -52.10 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.08 Total: -14.04 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.94 -7.45 -40.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052999929.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.460 kcal (2) G-P(sol) polarization free energy of solvation -32.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds