Wall clock time and date at job start Mon Mar 30 2020 06:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38877 * 120.00285 * 2 1 4 4 C 1.38962 * 120.17178 * 354.74197 * 3 2 1 5 5 C 1.37956 * 120.05936 * 180.25324 * 4 3 2 6 6 C 1.38616 * 120.42411 * 359.44952 * 5 4 3 7 7 C 1.50700 * 119.82349 * 180.27633 * 6 5 4 8 8 C 1.37752 * 120.35025 * 0.55365 * 6 5 4 9 9 C 1.39739 * 119.92588 * 359.72351 * 8 6 5 10 10 C 1.47431 * 120.20317 * 179.97438 * 9 8 6 11 11 O 1.21603 * 119.99914 * 127.56957 * 10 9 8 12 12 N 1.34780 * 120.00185 * 307.56183 * 10 9 8 13 13 C 1.46505 * 119.99689 * 3.99663 * 12 10 9 14 14 C 1.46494 * 120.00111 * 184.00053 * 12 10 9 15 15 C 1.50703 * 109.46942 * 89.99890 * 14 12 10 16 16 H 1.07992 * 120.00459 * 0.02562 * 15 14 12 17 17 C 1.37879 * 119.99733 * 179.97438 * 15 14 12 18 18 N 1.31523 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00035 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47310 * 89.99725 * 19 17 15 21 21 H 1.48503 * 109.46805 * 210.00022 * 19 17 15 22 22 H 1.48494 * 109.46866 * 329.99561 * 19 17 15 23 23 H 1.08995 * 109.47385 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47004 * 300.00651 * 1 2 3 25 25 H 1.09005 * 109.46670 * 60.00221 * 1 2 3 26 26 H 0.96996 * 119.99634 * 179.97438 * 2 1 3 27 27 H 1.07997 * 119.96822 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.78611 * 179.70422 * 5 4 3 29 29 H 1.08993 * 109.46926 * 270.27382 * 7 6 5 30 30 H 1.09004 * 109.46903 * 30.27967 * 7 6 5 31 31 H 1.09000 * 109.46984 * 150.27223 * 7 6 5 32 32 H 1.07993 * 120.03369 * 179.74664 * 8 6 5 33 33 H 1.09001 * 109.46636 * 84.55103 * 13 12 10 34 34 H 1.08999 * 109.46983 * 204.55119 * 13 12 10 35 35 H 1.08995 * 109.47432 * 324.55359 * 13 12 10 36 36 H 1.08998 * 109.46974 * 209.99960 * 14 12 10 37 37 H 1.08997 * 109.47324 * 330.00110 * 14 12 10 38 38 H 0.97004 * 119.99542 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1595 1.2027 0.0000 4 6 1.4727 2.4057 -0.1101 5 6 2.1653 3.5988 -0.1151 6 6 3.5466 3.6091 0.0007 7 6 4.2890 4.9206 -0.0001 8 6 4.2447 2.4267 0.1107 9 6 3.5584 1.2095 0.1116 10 6 4.2995 -0.0597 0.2285 11 8 3.9862 -0.8706 1.0788 12 7 5.3241 -0.3212 -0.6072 13 6 5.7579 0.6910 -1.5734 14 6 6.0039 -1.6176 -0.5493 15 6 5.3242 -2.5834 -1.4855 16 1 4.4715 -2.2635 -2.0658 17 6 5.7917 -3.8753 -1.6019 18 7 6.8305 -4.2648 -0.8955 19 14 4.9497 -5.0723 -2.7628 20 1 5.5804 -4.9873 -4.1045 21 1 5.0900 -6.4538 -2.2365 22 1 3.5094 -4.7274 -2.8702 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.9499 -0.8400 0.0004 27 1 0.3962 2.4064 -0.1963 28 1 1.6274 4.5310 -0.2057 29 1 4.5498 5.1898 -1.0235 30 1 3.6558 5.6968 0.4298 31 1 5.1982 4.8237 0.5931 32 1 5.3211 2.4405 0.1965 33 1 6.4537 1.3781 -1.0920 34 1 6.2519 0.2030 -2.4136 35 1 4.8909 1.2448 -1.9334 36 1 7.0453 -1.4953 -0.8467 37 1 5.9598 -2.0060 0.4681 38 1 7.1592 -5.1738 -0.9772 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052999929.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:52 Heat of formation + Delta-G solvation = -32.686732 kcal Electronic energy + Delta-G solvation = -19835.583458 eV Core-core repulsion = 16869.803995 eV Total energy + Delta-G solvation = -2965.779464 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.37463 -39.44308 -37.05780 -36.38011 -34.77832 -32.58568 -31.98796 -29.66618 -28.09378 -27.48579 -25.79606 -25.50181 -23.66425 -21.93421 -20.16031 -18.75031 -18.35144 -17.91670 -17.17701 -17.04857 -16.26740 -15.90224 -15.27424 -15.15499 -14.96842 -14.73373 -14.38914 -14.27508 -14.16343 -13.81447 -13.50534 -13.16404 -12.94717 -12.88121 -12.83763 -12.77704 -12.54419 -12.53625 -12.23818 -11.95491 -11.75542 -10.80026 -10.67400 -10.66578 -9.80112 -9.47043 -8.27748 -8.23482 -6.40573 0.23978 0.68465 1.34502 1.37220 1.47564 1.83266 2.30789 2.44489 2.57705 2.93483 3.04251 3.72208 3.96041 4.14485 4.28975 4.38330 4.46262 4.49924 4.62997 4.63594 4.66487 4.81299 4.86718 4.90680 4.97097 5.03667 5.11532 5.18598 5.25691 5.36881 5.46136 5.52833 5.78162 5.80600 6.00258 6.02291 6.42943 6.56686 6.66185 6.73682 7.23491 7.41080 8.82274 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.022533 B = 0.005900 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.329096 B = 4744.634251 C = 5509.696797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.755 5.755 3 C 0.234 3.766 4 C -0.201 4.201 5 C -0.047 4.047 6 C -0.155 4.155 7 C -0.100 4.100 8 C -0.047 4.047 9 C -0.226 4.226 10 C 0.550 3.450 11 O -0.598 6.598 12 N -0.601 5.601 13 C 0.084 3.916 14 C 0.258 3.742 15 C -0.543 4.543 16 H 0.051 0.949 17 C 0.009 3.991 18 N -0.927 5.927 19 Si 0.970 3.030 20 H -0.263 1.263 21 H -0.279 1.279 22 H -0.273 1.273 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.394 0.606 27 H 0.148 0.852 28 H 0.159 0.841 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.127 0.873 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.025 0.975 37 H 0.000 1.000 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.163 18.649 -2.123 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.382 5.382 3 C 0.127 3.873 4 C -0.224 4.224 5 C -0.066 4.066 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.066 4.066 9 C -0.234 4.234 10 C 0.340 3.660 11 O -0.480 6.480 12 N -0.331 5.331 13 C -0.058 4.058 14 C 0.137 3.863 15 C -0.581 4.581 16 H 0.069 0.931 17 C -0.190 4.190 18 N -0.567 5.567 19 Si 0.794 3.206 20 H -0.188 1.188 21 H -0.205 1.205 22 H -0.198 1.198 23 H 0.099 0.901 24 H 0.082 0.918 25 H 0.089 0.911 26 H 0.227 0.773 27 H 0.165 0.835 28 H 0.176 0.824 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.145 0.855 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.043 0.957 37 H 0.018 0.982 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.405 18.079 -1.678 20.927 hybrid contribution 0.271 -1.781 -0.245 1.818 sum -10.134 16.298 -1.923 19.288 Atomic orbital electron populations 1.21765 0.78005 1.03575 1.02091 1.44830 1.07466 1.05678 1.80194 1.18027 0.89354 0.87871 0.92058 1.20841 1.00759 0.89989 1.10772 1.21288 0.93354 0.98024 0.93908 1.19884 0.94388 0.95257 1.06167 1.20685 0.99710 0.92416 1.02836 1.21042 0.99652 0.90243 0.95684 1.19379 0.92930 0.93238 1.17890 1.18791 0.79975 0.86683 0.80528 1.90686 1.68548 1.51271 1.37539 1.48104 1.32974 1.16691 1.35351 1.21926 1.00686 0.90907 0.92277 1.18820 0.91870 0.79744 0.95876 1.21632 1.14905 0.97009 1.24599 0.93082 1.25871 0.95645 0.99815 0.97670 1.70062 1.25597 1.19148 1.41865 0.85378 0.78658 0.77615 0.78921 1.18822 1.20461 1.19753 0.90148 0.91764 0.91148 0.77288 0.83470 0.82366 0.90524 0.90173 0.91891 0.85470 0.90915 0.91213 0.90409 0.95694 0.98212 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.99 9.96 127.77 1.27 3.26 16 2 N -0.76 -25.22 5.71 -360.21 -2.05 -27.28 16 3 C 0.23 7.67 6.64 38.71 0.26 7.93 16 4 C -0.20 -4.82 9.30 22.38 0.21 -4.62 16 5 C -0.05 -0.94 9.68 22.29 0.22 -0.72 16 6 C -0.15 -3.40 5.87 -19.89 -0.12 -3.51 16 7 C -0.10 -1.47 10.00 71.24 0.71 -0.76 16 8 C -0.05 -1.36 7.55 22.52 0.17 -1.19 16 9 C -0.23 -8.27 4.77 -19.98 -0.10 -8.36 16 10 C 0.55 25.74 6.51 86.66 0.56 26.30 16 11 O -0.60 -33.30 15.40 -4.04 -0.06 -33.36 16 12 N -0.60 -27.89 2.86 -855.05 -2.44 -30.33 16 13 C 0.08 2.90 9.13 127.77 1.17 4.07 16 14 C 0.26 14.57 5.17 85.64 0.44 15.01 16 15 C -0.54 -32.09 9.39 25.60 0.24 -31.85 16 16 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 17 C 0.01 0.53 5.46 84.65 0.46 1.00 16 18 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 19 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 1.25 8.12 -2.39 -0.02 1.23 16 25 H 0.07 1.28 7.74 -2.38 -0.02 1.26 16 26 H 0.39 16.05 6.92 -92.71 -0.64 15.41 16 27 H 0.15 2.71 6.72 -2.91 -0.02 2.69 16 28 H 0.16 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.88 8.08 -2.38 -0.02 0.87 16 31 H 0.06 0.93 8.08 -2.39 -0.02 0.91 16 32 H 0.13 3.44 6.66 -2.91 -0.02 3.42 16 33 H 0.07 2.06 7.19 -2.39 -0.02 2.04 16 34 H 0.07 2.42 8.03 -2.39 -0.02 2.40 16 35 H 0.08 2.41 6.46 -2.39 -0.02 2.39 16 36 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 37 H 0.00 -0.02 7.37 -2.39 -0.02 -0.03 16 38 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -75.97 317.43 3.67 -72.30 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.42 Total: 21.30 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 5.50 Total: 6.56 kcal Atomic # 7 Polarization: -109.95 SS G_CDS: -4.21 Total: -114.16 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.06 Total: -33.36 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -75.97 3.67 -72.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052999929.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.609 kcal (2) G-P(sol) polarization free energy of solvation -75.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds