Wall clock time and date at job start Mon Mar 30 2020 06:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47144 * 2 1 4 4 C 1.38871 * 120.00043 * 180.02562 * 3 2 1 5 5 C 1.38953 * 120.17391 * 5.69943 * 4 3 2 6 6 C 1.37959 * 120.06284 * 180.30570 * 5 4 3 7 7 C 1.38611 * 120.41954 * 359.71830 * 6 5 4 8 8 C 1.37743 * 120.35596 * 359.97438 * 7 6 5 9 9 C 1.39739 * 119.92577 * 0.02562 * 8 7 6 10 10 C 1.47428 * 120.20990 * 180.02562 * 9 8 7 11 11 O 1.21597 * 120.00240 * 174.13526 * 10 9 8 12 12 N 1.34781 * 120.00001 * 354.13501 * 10 9 8 13 13 C 1.46497 * 120.00184 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.47236 * 325.00362 * 13 12 10 15 15 C 1.53002 * 109.46858 * 84.99846 * 13 12 10 16 16 C 1.50695 * 109.47351 * 204.99866 * 13 12 10 17 17 H 1.08000 * 119.99855 * 359.97438 * 16 13 12 18 18 C 1.37874 * 120.00392 * 180.02562 * 16 13 12 19 19 N 1.31515 * 119.99930 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00360 * 180.02562 * 18 16 13 21 21 H 1.48505 * 109.47300 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47217 * 119.99594 * 20 18 16 23 23 H 1.48500 * 109.47444 * 239.99607 * 20 18 16 24 24 H 1.09005 * 109.47057 * 60.00151 * 1 2 3 25 25 H 1.09001 * 109.47433 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47501 * 300.00601 * 1 2 3 27 27 H 1.08991 * 109.47235 * 239.99627 * 2 1 3 28 28 H 1.08997 * 109.46891 * 119.99541 * 2 1 3 29 29 H 0.97008 * 119.99964 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.97427 * 359.97438 * 5 4 3 31 31 H 1.07994 * 119.79233 * 179.74338 * 6 5 4 32 32 H 1.08006 * 119.82389 * 179.97438 * 7 6 5 33 33 H 1.08003 * 120.03966 * 180.02562 * 8 7 6 34 34 H 0.96999 * 119.99905 * 359.97438 * 12 10 9 35 35 H 1.09006 * 109.47016 * 180.02562 * 15 13 12 36 36 H 1.09003 * 109.47410 * 299.99669 * 15 13 12 37 37 H 1.09002 * 109.47271 * 60.00247 * 15 13 12 38 38 H 0.96997 * 120.00427 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3836 1.6350 -0.0005 5 6 4.2887 0.5874 -0.1204 6 6 5.6446 0.8415 -0.1143 7 6 6.1149 2.1400 0.0051 8 6 5.2330 3.1920 0.1186 9 6 3.8565 2.9514 0.1141 10 6 2.9070 4.0728 0.2346 11 8 1.7128 3.8729 0.1235 12 7 3.3628 5.3195 0.4680 13 6 2.4194 6.4340 0.5872 14 1 1.5821 6.2755 -0.0925 15 6 1.9014 6.5121 2.0247 16 6 3.1165 7.7223 0.2337 17 1 4.1583 7.7121 -0.0509 18 6 2.4248 8.9143 0.2746 19 7 1.1563 8.9268 0.6216 20 14 3.2887 10.5112 -0.1643 21 1 4.7030 10.2280 -0.5179 22 1 2.6053 11.1418 -1.3222 23 1 3.2450 11.4336 0.9987 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3879 2.1186 -0.0004 30 1 3.9304 -0.4272 -0.2130 31 1 6.3442 0.0237 -0.2035 32 1 7.1784 2.3278 0.0092 33 1 5.6050 4.2017 0.2109 34 1 4.3154 5.4789 0.5570 35 1 1.1991 7.3410 2.1134 36 1 1.3971 5.5802 2.2804 37 1 2.7387 6.6705 2.7045 38 1 0.6696 9.7654 0.6507 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062820338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:55 Heat of formation + Delta-G solvation = -15.747950 kcal Electronic energy + Delta-G solvation = -19495.077913 eV Core-core repulsion = 16530.032970 eV Total energy + Delta-G solvation = -2965.044943 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.94856 -37.89983 -36.01583 -34.73878 -32.49430 -31.43217 -30.91031 -28.72272 -27.68748 -25.25610 -23.79972 -23.16111 -21.16410 -20.90713 -19.42534 -17.88250 -16.77942 -16.17427 -15.52301 -15.14906 -15.06847 -14.74653 -14.27023 -14.15510 -13.88471 -13.46504 -12.87146 -12.64118 -12.37656 -12.34126 -11.82713 -11.73106 -11.66730 -11.56182 -11.08523 -10.98060 -10.96270 -10.72747 -10.29388 -10.23616 -9.93465 -9.05476 -9.00234 -8.78637 -8.55320 -7.94312 -7.18112 -6.12330 -4.21373 1.25444 1.80231 3.24167 3.31948 3.34869 3.46704 3.70293 4.13900 4.31074 4.40789 4.99058 5.00655 5.05877 5.08365 5.20280 5.31823 5.34289 5.54886 5.64877 5.68763 5.87256 5.88944 6.05066 6.07986 6.36774 6.52955 6.71397 6.83239 6.97001 6.98242 7.15309 7.41818 7.51881 7.60074 7.71181 7.91866 8.10539 8.22209 8.67395 8.78580 9.14499 9.46316 10.93776 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024106 B = 0.005012 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.274524 B = 5584.776095 C = 6524.242742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.113 3.887 3 N -0.729 5.729 4 C 0.271 3.729 5 C -0.219 4.219 6 C -0.052 4.052 7 C -0.198 4.198 8 C -0.036 4.036 9 C -0.216 4.216 10 C 0.557 3.443 11 O -0.567 6.567 12 N -0.700 5.700 13 C 0.263 3.737 14 H 0.050 0.950 15 C -0.146 4.146 16 C -0.533 4.533 17 H 0.062 0.938 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.902 3.098 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.422 0.578 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.389 0.611 35 H 0.090 0.910 36 H 0.014 0.986 37 H 0.026 0.974 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.765 -16.012 -0.459 17.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.369 5.369 4 C 0.161 3.839 5 C -0.242 4.242 6 C -0.071 4.071 7 C -0.218 4.218 8 C -0.055 4.055 9 C -0.224 4.224 10 C 0.345 3.655 11 O -0.450 6.450 12 N -0.346 5.346 13 C 0.162 3.838 14 H 0.067 0.933 15 C -0.205 4.205 16 C -0.571 4.571 17 H 0.080 0.920 18 C -0.137 4.137 19 N -0.521 5.521 20 Si 0.729 3.271 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.273 0.727 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.223 0.777 35 H 0.109 0.891 36 H 0.033 0.967 37 H 0.045 0.955 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.597 -16.097 -0.499 16.748 hybrid contribution 0.736 1.187 -0.152 1.405 sum 5.333 -14.910 -0.651 15.848 Atomic orbital electron populations 1.21945 0.94591 1.02446 1.03158 1.21310 0.94826 0.84394 1.00623 1.45827 1.04446 1.08720 1.77928 1.17812 0.84798 0.91908 0.89405 1.20593 0.93018 0.97742 1.12808 1.20959 0.94622 0.96629 0.94870 1.20737 0.99301 0.92578 1.09181 1.21134 0.91542 0.99228 0.93613 1.19640 0.94135 0.92476 1.16192 1.18067 0.87451 0.83171 0.76808 1.90309 1.16917 1.83203 1.54540 1.46409 1.11228 1.07530 1.69435 1.18777 0.88738 0.82124 0.94194 0.93262 1.22075 1.00463 1.00260 0.97698 1.21255 0.97509 0.91104 1.47265 0.92001 1.24885 0.94870 0.99179 0.94769 1.69911 1.08274 1.26897 1.47049 0.86388 0.79634 0.82943 0.78099 1.19696 1.20877 1.20876 0.91835 0.91222 0.91810 0.92572 0.92565 0.72728 0.86098 0.86338 0.86262 0.85710 0.77701 0.89124 0.96664 0.95450 0.92644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 10.03 37.16 0.37 -1.30 16 2 C 0.11 1.30 5.66 -4.04 -0.02 1.28 16 3 N -0.73 -11.50 5.59 -58.45 -0.33 -11.83 16 4 C 0.27 4.38 6.65 -83.62 -0.56 3.82 16 5 C -0.22 -2.88 9.30 -39.42 -0.37 -3.24 16 6 C -0.05 -0.61 10.03 -39.55 -0.40 -1.01 16 7 C -0.20 -2.47 10.02 -39.62 -0.40 -2.87 16 8 C -0.04 -0.53 9.52 -39.20 -0.37 -0.90 16 9 C -0.22 -3.80 5.89 -104.80 -0.62 -4.42 16 10 C 0.56 11.82 7.71 -12.52 -0.10 11.72 16 11 O -0.57 -13.42 13.31 5.28 0.07 -13.35 16 12 N -0.70 -15.18 5.02 -56.01 -0.28 -15.46 16 13 C 0.26 6.80 2.56 -69.09 -0.18 6.62 16 14 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 15 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 16 C -0.53 -14.25 8.73 -34.44 -0.30 -14.55 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 19 N -0.88 -24.98 11.32 55.43 0.63 -24.35 16 20 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.58 7.72 -51.93 -0.40 0.18 16 28 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 29 H 0.42 7.72 4.98 -40.93 -0.20 7.52 16 30 H 0.12 1.32 6.72 -52.49 -0.35 0.97 16 31 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 33 H 0.13 1.67 6.45 -52.48 -0.34 1.33 16 34 H 0.39 7.40 6.60 -40.82 -0.27 7.13 16 35 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 313.87 15.07 4.73 4.73 Total: -1.00 -30.26 313.87 -8.08 -38.34 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -5.20 Total: 12.72 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.68 Total: -6.50 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.02 Total: -51.64 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.07 Total: -13.35 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.26 -8.08 -38.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062820338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.588 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds