Wall clock time and date at job start Mon Mar 30 2020 06:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47144 * 2 1 4 4 C 1.38871 * 120.00043 * 180.02562 * 3 2 1 5 5 C 1.38953 * 120.17391 * 5.69943 * 4 3 2 6 6 C 1.37959 * 120.06284 * 180.30570 * 5 4 3 7 7 C 1.38611 * 120.41954 * 359.71830 * 6 5 4 8 8 C 1.37743 * 120.35596 * 359.97438 * 7 6 5 9 9 C 1.39739 * 119.92577 * 0.02562 * 8 7 6 10 10 C 1.47428 * 120.20990 * 180.02562 * 9 8 7 11 11 O 1.21597 * 120.00240 * 174.13526 * 10 9 8 12 12 N 1.34781 * 120.00001 * 354.13501 * 10 9 8 13 13 C 1.46497 * 120.00184 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.47236 * 325.00362 * 13 12 10 15 15 C 1.53002 * 109.46858 * 84.99846 * 13 12 10 16 16 C 1.50695 * 109.47351 * 204.99866 * 13 12 10 17 17 H 1.08000 * 119.99855 * 359.97438 * 16 13 12 18 18 C 1.37874 * 120.00392 * 180.02562 * 16 13 12 19 19 N 1.31515 * 119.99930 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00360 * 180.02562 * 18 16 13 21 21 H 1.48505 * 109.47300 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47217 * 119.99594 * 20 18 16 23 23 H 1.48500 * 109.47444 * 239.99607 * 20 18 16 24 24 H 1.09005 * 109.47057 * 60.00151 * 1 2 3 25 25 H 1.09001 * 109.47433 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47501 * 300.00601 * 1 2 3 27 27 H 1.08991 * 109.47235 * 239.99627 * 2 1 3 28 28 H 1.08997 * 109.46891 * 119.99541 * 2 1 3 29 29 H 0.97008 * 119.99964 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.97427 * 359.97438 * 5 4 3 31 31 H 1.07994 * 119.79233 * 179.74338 * 6 5 4 32 32 H 1.08006 * 119.82389 * 179.97438 * 7 6 5 33 33 H 1.08003 * 120.03966 * 180.02562 * 8 7 6 34 34 H 0.96999 * 119.99905 * 359.97438 * 12 10 9 35 35 H 1.09006 * 109.47016 * 180.02562 * 15 13 12 36 36 H 1.09003 * 109.47410 * 299.99669 * 15 13 12 37 37 H 1.09002 * 109.47271 * 60.00247 * 15 13 12 38 38 H 0.96997 * 120.00427 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3836 1.6350 -0.0005 5 6 4.2887 0.5874 -0.1204 6 6 5.6446 0.8415 -0.1143 7 6 6.1149 2.1400 0.0051 8 6 5.2330 3.1920 0.1186 9 6 3.8565 2.9514 0.1141 10 6 2.9070 4.0728 0.2346 11 8 1.7128 3.8729 0.1235 12 7 3.3628 5.3195 0.4680 13 6 2.4194 6.4340 0.5872 14 1 1.5821 6.2755 -0.0925 15 6 1.9014 6.5121 2.0247 16 6 3.1165 7.7223 0.2337 17 1 4.1583 7.7121 -0.0509 18 6 2.4248 8.9143 0.2746 19 7 1.1563 8.9268 0.6216 20 14 3.2887 10.5112 -0.1643 21 1 4.7030 10.2280 -0.5179 22 1 2.6053 11.1418 -1.3222 23 1 3.2450 11.4336 0.9987 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.3879 2.1186 -0.0004 30 1 3.9304 -0.4272 -0.2130 31 1 6.3442 0.0237 -0.2035 32 1 7.1784 2.3278 0.0092 33 1 5.6050 4.2017 0.2109 34 1 4.3154 5.4789 0.5570 35 1 1.1991 7.3410 2.1134 36 1 1.3971 5.5802 2.2804 37 1 2.7387 6.6705 2.7045 38 1 0.6696 9.7654 0.6507 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062820338.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:55 Heat of formation + Delta-G solvation = -35.262974 kcal Electronic energy + Delta-G solvation = -19495.924148 eV Core-core repulsion = 16530.032970 eV Total energy + Delta-G solvation = -2965.891178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.30546 -39.33584 -37.16784 -36.53301 -34.38178 -32.53201 -32.16708 -30.43390 -28.81880 -27.36605 -24.99487 -24.35941 -22.60674 -22.21764 -21.09167 -19.40210 -18.05490 -17.73864 -17.20911 -16.53833 -16.37870 -16.10655 -15.71736 -15.44907 -15.19703 -14.64173 -14.53742 -14.22065 -13.85824 -13.60399 -13.19147 -13.01130 -12.88860 -12.82260 -12.71344 -12.64976 -12.50290 -12.30682 -12.12288 -11.97220 -11.11989 -10.95060 -10.69688 -10.56487 -9.99842 -9.69016 -8.31229 -8.19129 -6.36880 0.09774 0.74687 1.43924 1.44578 1.57174 2.05627 2.34947 2.62701 2.65958 3.07910 3.12102 3.95521 3.95954 4.10682 4.19701 4.27010 4.48666 4.54386 4.60364 4.70401 4.72999 4.88728 4.92502 5.01171 5.05178 5.07775 5.19327 5.28203 5.40421 5.52678 5.58085 5.66429 5.69038 5.88697 5.99866 6.06617 6.50892 6.68482 6.84813 6.94203 7.31275 7.54636 8.87574 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.024106 B = 0.005012 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.274524 B = 5584.776095 C = 6524.242742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.109 3.891 3 N -0.745 5.745 4 C 0.253 3.747 5 C -0.218 4.218 6 C -0.037 4.037 7 C -0.193 4.193 8 C -0.043 4.043 9 C -0.252 4.252 10 C 0.550 3.450 11 O -0.603 6.603 12 N -0.699 5.699 13 C 0.271 3.729 14 H 0.000 1.000 15 C -0.132 4.132 16 C -0.547 4.547 17 H 0.072 0.928 18 C 0.015 3.985 19 N -0.918 5.918 20 Si 0.975 3.025 21 H -0.260 1.260 22 H -0.283 1.283 23 H -0.277 1.277 24 H 0.051 0.949 25 H 0.100 0.900 26 H 0.048 0.952 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.407 0.593 30 H 0.146 0.854 31 H 0.161 0.839 32 H 0.151 0.849 33 H 0.131 0.869 34 H 0.402 0.598 35 H 0.068 0.932 36 H 0.010 0.990 37 H 0.039 0.961 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.659 -17.639 -0.735 19.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.014 4.014 3 N -0.382 5.382 4 C 0.142 3.858 5 C -0.241 4.241 6 C -0.056 4.056 7 C -0.213 4.213 8 C -0.062 4.062 9 C -0.260 4.260 10 C 0.341 3.659 11 O -0.488 6.488 12 N -0.347 5.347 13 C 0.168 3.832 14 H 0.017 0.983 15 C -0.191 4.191 16 C -0.585 4.585 17 H 0.091 0.909 18 C -0.185 4.185 19 N -0.556 5.556 20 Si 0.799 3.201 21 H -0.183 1.183 22 H -0.209 1.209 23 H -0.203 1.203 24 H 0.070 0.930 25 H 0.118 0.882 26 H 0.067 0.933 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.254 0.746 30 H 0.164 0.836 31 H 0.178 0.822 32 H 0.169 0.831 33 H 0.149 0.851 34 H 0.238 0.762 35 H 0.087 0.913 36 H 0.029 0.971 37 H 0.058 0.942 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.536 -17.773 -0.773 19.320 hybrid contribution -0.160 1.551 -0.082 1.561 sum 7.376 -16.222 -0.855 17.841 Atomic orbital electron populations 1.21950 0.94064 1.03978 1.01843 1.21555 0.95380 0.82538 1.01967 1.46038 1.04402 1.09859 1.77942 1.18171 0.85447 0.92250 0.89912 1.20929 0.93266 0.97966 1.11913 1.21484 0.94652 0.97564 0.91876 1.21138 1.00481 0.92195 1.07472 1.21303 0.90644 1.00589 0.93651 1.19471 0.94556 0.91693 1.20293 1.18763 0.87817 0.83737 0.75616 1.90295 1.18749 1.83850 1.55859 1.46143 1.11238 1.07033 1.70288 1.18373 0.88224 0.83578 0.93072 0.98252 1.21889 1.00226 0.99053 0.97890 1.21559 0.98047 0.91522 1.47420 0.90939 1.25814 0.95478 1.02806 0.94441 1.70058 1.09850 1.27881 1.47808 0.85258 0.78897 0.78244 0.77697 1.18338 1.20897 1.20294 0.93033 0.88171 0.93265 0.90848 0.91191 0.74619 0.83607 0.82167 0.83103 0.85118 0.76157 0.91286 0.97079 0.94228 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 10.03 71.98 0.72 -2.51 16 2 C 0.11 2.38 5.66 86.38 0.49 2.87 16 3 N -0.74 -23.82 5.59 -338.84 -1.89 -25.72 16 4 C 0.25 8.00 6.65 38.71 0.26 8.26 16 5 C -0.22 -5.06 9.30 22.38 0.21 -4.85 16 6 C -0.04 -0.70 10.03 22.29 0.22 -0.48 16 7 C -0.19 -4.10 10.02 22.24 0.22 -3.87 16 8 C -0.04 -1.20 9.52 22.52 0.21 -0.98 16 9 C -0.25 -8.91 5.89 -19.98 -0.12 -9.03 16 10 C 0.55 24.44 7.71 86.66 0.67 25.10 16 11 O -0.60 -30.49 13.31 -4.02 -0.05 -30.54 16 12 N -0.70 -31.47 5.02 -449.38 -2.25 -33.73 16 13 C 0.27 14.64 2.56 44.24 0.11 14.75 16 14 H 0.00 -0.03 7.58 -2.39 -0.02 -0.04 16 15 C -0.13 -6.95 9.26 71.98 0.67 -6.28 16 16 C -0.55 -29.76 8.73 25.60 0.22 -29.54 16 17 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 18 C 0.01 0.80 5.30 84.65 0.45 1.24 16 19 N -0.92 -53.38 11.32 21.45 0.24 -53.13 16 20 Si 0.97 42.53 29.54 68.60 2.03 44.56 16 21 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 25 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 27 H 0.07 1.35 7.72 -2.39 -0.02 1.33 16 28 H 0.07 1.33 8.13 -2.39 -0.02 1.31 16 29 H 0.41 15.76 4.98 -94.57 -0.47 15.28 16 30 H 0.15 2.59 6.72 -2.91 -0.02 2.57 16 31 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 32 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 33 H 0.13 3.35 6.45 -2.91 -0.02 3.34 16 34 H 0.40 15.55 6.60 -92.71 -0.61 14.94 16 35 H 0.07 3.93 6.07 -2.38 -0.01 3.92 16 36 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -68.90 313.87 2.40 -66.50 By element: Atomic # 1 Polarization: 37.39 SS G_CDS: -0.01 Total: 37.38 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 4.34 Total: -5.32 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -3.91 Total: -112.58 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.05 Total: -30.54 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -68.90 2.40 -66.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062820338.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.238 kcal (2) G-P(sol) polarization free energy of solvation -68.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds