Wall clock time and date at job start Mon Mar 30 2020 06:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.47138 * 2 1 4 4 C 1.38877 * 120.00190 * 179.97438 * 3 2 1 5 5 C 1.38954 * 120.17182 * 5.53748 * 4 3 2 6 6 C 1.37960 * 120.06211 * 180.02562 * 5 4 3 7 7 C 1.38609 * 120.42380 * 359.69863 * 6 5 4 8 8 C 1.37745 * 120.35134 * 0.56042 * 7 6 5 9 9 C 1.39741 * 119.92532 * 359.46756 * 8 7 6 10 10 C 1.47426 * 120.20712 * 180.27869 * 9 8 7 11 11 O 1.21608 * 120.00300 * 174.09463 * 10 9 8 12 12 N 1.34783 * 120.00476 * 354.08905 * 10 9 8 13 13 C 1.46491 * 120.00538 * 180.02562 * 12 10 9 14 14 H 1.09008 * 109.46893 * 35.00208 * 13 12 10 15 15 C 1.53001 * 109.47417 * 275.00549 * 13 12 10 16 16 C 1.50695 * 109.47336 * 155.00217 * 13 12 10 17 17 H 1.07995 * 120.00217 * 35.09724 * 16 13 12 18 18 C 1.37875 * 120.00016 * 215.10348 * 16 13 12 19 19 N 1.31515 * 120.00131 * 174.93019 * 18 16 13 20 20 Si 1.86799 * 120.00247 * 354.92668 * 18 16 13 21 21 H 1.48498 * 109.47236 * 94.88640 * 20 18 16 22 22 H 1.48506 * 109.47486 * 214.88603 * 20 18 16 23 23 H 1.48506 * 109.46992 * 334.88348 * 20 18 16 24 24 H 1.09003 * 109.47114 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46963 * 299.99865 * 1 2 3 26 26 H 1.09001 * 109.46865 * 60.00509 * 1 2 3 27 27 H 1.09002 * 109.47184 * 239.99581 * 2 1 3 28 28 H 1.09004 * 109.46665 * 119.99981 * 2 1 3 29 29 H 0.97005 * 120.00033 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.97130 * 0.02562 * 5 4 3 31 31 H 1.08002 * 119.78818 * 179.97438 * 6 5 4 32 32 H 1.08001 * 119.82339 * 180.30342 * 7 6 5 33 33 H 1.08004 * 120.03855 * 179.74376 * 8 7 6 34 34 H 0.97001 * 119.99311 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.46414 * 305.00435 * 15 13 12 36 36 H 1.09001 * 109.47244 * 65.00190 * 15 13 12 37 37 H 1.09002 * 109.47233 * 185.00610 * 15 13 12 38 38 H 0.97002 * 120.00389 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 3.3837 1.6349 0.0005 5 6 4.2889 0.5870 -0.1148 6 6 5.6448 0.8417 -0.1135 7 6 6.1148 2.1410 -0.0038 8 6 5.2330 3.1923 0.1169 9 6 3.8566 2.9511 0.1177 10 6 2.9072 4.0722 0.2403 11 8 1.7125 3.8719 0.1330 12 7 3.3631 5.3194 0.4714 13 6 2.4196 6.4333 0.5937 14 1 1.5076 6.0854 1.0788 15 6 2.0832 6.9721 -0.7982 16 6 3.0412 7.5296 1.4200 17 1 4.1014 7.7232 1.3506 18 6 2.2563 8.2855 2.2648 19 7 2.8120 9.1743 3.0591 20 14 0.4037 8.0473 2.2812 21 1 0.0362 7.0976 3.3621 22 1 -0.2613 9.3530 2.5225 23 1 -0.0369 7.5019 0.9721 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3880 2.1185 -0.0004 30 1 3.9307 -0.4278 -0.2056 31 1 6.3445 0.0238 -0.2030 32 1 7.1782 2.3298 -0.0087 33 1 5.6049 4.2024 0.2062 34 1 4.3160 5.4793 0.5566 35 1 3.0042 7.2375 -1.3173 36 1 1.5537 6.2069 -1.3658 37 1 1.4522 7.8558 -0.7030 38 1 2.2599 9.7058 3.6537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062820339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:57 Heat of formation + Delta-G solvation = -15.411362 kcal Electronic energy + Delta-G solvation = -19587.858410 eV Core-core repulsion = 16622.828063 eV Total energy + Delta-G solvation = -2965.030347 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.02373 -38.01286 -36.06657 -34.83080 -32.45793 -31.49971 -31.15191 -29.32643 -27.80133 -25.29394 -23.85011 -23.21664 -21.20740 -20.82052 -19.54611 -17.98537 -16.93098 -16.40184 -15.78497 -15.20429 -15.11496 -14.83223 -14.30898 -14.15531 -13.84560 -13.51002 -12.96244 -12.70383 -12.52603 -12.39878 -12.31136 -11.86536 -11.74463 -11.64504 -11.46313 -11.18787 -11.01488 -10.79566 -10.51350 -9.97224 -9.87208 -9.18111 -9.12987 -8.83563 -8.74017 -8.10736 -7.22840 -6.23769 -4.26897 1.20933 1.77028 3.24127 3.33642 3.38807 3.40997 3.65247 4.04418 4.25293 4.32412 4.94339 4.97134 5.01111 5.03459 5.15940 5.27281 5.31871 5.50560 5.61107 5.64162 5.82422 5.84555 5.99787 6.04032 6.28996 6.36029 6.50062 6.53509 6.66957 6.69104 6.92259 6.95232 7.17648 7.38321 7.51402 7.52825 8.12153 8.14149 8.57891 8.77208 9.00151 9.38685 10.87976 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020780 B = 0.005784 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.151522 B = 4839.957568 C = 5769.701566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.113 3.887 3 N -0.729 5.729 4 C 0.272 3.728 5 C -0.218 4.218 6 C -0.050 4.050 7 C -0.197 4.197 8 C -0.034 4.034 9 C -0.218 4.218 10 C 0.558 3.442 11 O -0.572 6.572 12 N -0.694 5.694 13 C 0.231 3.769 14 H 0.051 0.949 15 C -0.149 4.149 16 C -0.531 4.531 17 H 0.079 0.921 18 C 0.081 3.919 19 N -0.888 5.888 20 Si 0.873 3.127 21 H -0.276 1.276 22 H -0.284 1.284 23 H -0.257 1.257 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.422 0.578 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.126 0.874 34 H 0.394 0.606 35 H 0.045 0.955 36 H 0.029 0.971 37 H 0.055 0.945 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 -17.289 -6.510 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.370 5.370 4 C 0.161 3.839 5 C -0.241 4.241 6 C -0.069 4.069 7 C -0.217 4.217 8 C -0.054 4.054 9 C -0.226 4.226 10 C 0.346 3.654 11 O -0.455 6.455 12 N -0.341 5.341 13 C 0.129 3.871 14 H 0.069 0.931 15 C -0.208 4.208 16 C -0.569 4.569 17 H 0.097 0.903 18 C -0.123 4.123 19 N -0.524 5.524 20 Si 0.699 3.301 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.181 1.181 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.272 0.728 30 H 0.139 0.861 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.144 0.856 34 H 0.229 0.771 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.074 0.926 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.095 -17.353 -6.425 18.537 hybrid contribution -0.596 0.307 0.203 0.700 sum 0.500 -17.046 -6.222 18.153 Atomic orbital electron populations 1.21945 0.94628 1.02484 1.03070 1.21314 0.94785 0.84375 1.00688 1.45802 1.04436 1.08700 1.78027 1.17809 0.84773 0.91909 0.89400 1.20594 0.93017 0.97718 1.12800 1.20975 0.94624 0.96657 0.94691 1.20752 0.99385 0.92543 1.09009 1.21145 0.91482 0.99346 0.93381 1.19579 0.94110 0.92366 1.16514 1.18156 0.87477 0.83204 0.76550 1.90299 1.16962 1.83442 1.54807 1.46487 1.11320 1.07036 1.69254 1.19114 0.90062 0.84285 0.93629 0.93146 1.22258 1.00157 0.99758 0.98595 1.20997 0.97183 1.15228 1.23525 0.90325 1.24923 0.98799 0.94766 0.93830 1.69894 1.36052 1.23654 1.22840 0.86914 0.85699 0.77766 0.79721 1.20122 1.21043 1.18091 0.91185 0.91831 0.91912 0.92543 0.92500 0.72829 0.86075 0.86279 0.86160 0.85602 0.77125 0.93625 0.95206 0.92645 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 10.03 37.16 0.37 -1.24 16 2 C 0.11 1.26 5.66 -4.04 -0.02 1.24 16 3 N -0.73 -11.17 5.59 -58.45 -0.33 -11.49 16 4 C 0.27 4.27 6.65 -83.61 -0.56 3.72 16 5 C -0.22 -2.81 9.30 -39.42 -0.37 -3.17 16 6 C -0.05 -0.58 10.03 -39.55 -0.40 -0.98 16 7 C -0.20 -2.42 10.02 -39.62 -0.40 -2.82 16 8 C -0.03 -0.49 9.52 -39.20 -0.37 -0.87 16 9 C -0.22 -3.73 5.89 -104.80 -0.62 -4.34 16 10 C 0.56 11.38 7.71 -12.52 -0.10 11.29 16 11 O -0.57 -12.87 13.31 5.27 0.07 -12.80 16 12 N -0.69 -14.53 5.02 -56.01 -0.28 -14.81 16 13 C 0.23 5.58 2.10 -69.09 -0.15 5.43 16 14 H 0.05 1.32 5.03 -51.92 -0.26 1.06 16 15 C -0.15 -3.29 9.17 37.16 0.34 -2.95 16 16 C -0.53 -14.36 9.05 -34.44 -0.31 -14.68 16 17 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 18 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 19 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 20 Si 0.87 21.51 26.57 -169.99 -4.52 16.99 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.26 -6.18 6.19 56.52 0.35 -5.83 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.56 7.73 -51.93 -0.40 0.16 16 28 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 29 H 0.42 7.43 4.98 -40.94 -0.20 7.22 16 30 H 0.12 1.29 6.72 -52.49 -0.35 0.94 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.13 1.65 6.45 -52.48 -0.34 1.31 16 34 H 0.39 7.36 6.66 -40.82 -0.27 7.09 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.05 1.23 7.30 -51.93 -0.38 0.85 16 38 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 311.62 15.07 4.70 4.70 Total: -1.00 -31.00 311.62 -7.45 -38.45 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -5.20 Total: 11.61 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.67 Total: -7.19 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.17 Total: -51.76 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.07 Total: -12.80 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.52 Total: 16.99 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.00 -7.45 -38.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062820339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.041 kcal (2) G-P(sol) polarization free energy of solvation -31.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds