Wall clock time and date at job start Mon Mar 30 2020 06:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.47138 * 2 1 4 4 C 1.38877 * 120.00190 * 179.97438 * 3 2 1 5 5 C 1.38954 * 120.17182 * 5.53748 * 4 3 2 6 6 C 1.37960 * 120.06211 * 180.02562 * 5 4 3 7 7 C 1.38609 * 120.42380 * 359.69863 * 6 5 4 8 8 C 1.37745 * 120.35134 * 0.56042 * 7 6 5 9 9 C 1.39741 * 119.92532 * 359.46756 * 8 7 6 10 10 C 1.47426 * 120.20712 * 180.27869 * 9 8 7 11 11 O 1.21608 * 120.00300 * 174.09463 * 10 9 8 12 12 N 1.34783 * 120.00476 * 354.08905 * 10 9 8 13 13 C 1.46491 * 120.00538 * 180.02562 * 12 10 9 14 14 H 1.09008 * 109.46893 * 35.00208 * 13 12 10 15 15 C 1.53001 * 109.47417 * 275.00549 * 13 12 10 16 16 C 1.50695 * 109.47336 * 155.00217 * 13 12 10 17 17 H 1.07995 * 120.00217 * 35.09724 * 16 13 12 18 18 C 1.37875 * 120.00016 * 215.10348 * 16 13 12 19 19 N 1.31515 * 120.00131 * 174.93019 * 18 16 13 20 20 Si 1.86799 * 120.00247 * 354.92668 * 18 16 13 21 21 H 1.48498 * 109.47236 * 94.88640 * 20 18 16 22 22 H 1.48506 * 109.47486 * 214.88603 * 20 18 16 23 23 H 1.48506 * 109.46992 * 334.88348 * 20 18 16 24 24 H 1.09003 * 109.47114 * 180.02562 * 1 2 3 25 25 H 1.08993 * 109.46963 * 299.99865 * 1 2 3 26 26 H 1.09001 * 109.46865 * 60.00509 * 1 2 3 27 27 H 1.09002 * 109.47184 * 239.99581 * 2 1 3 28 28 H 1.09004 * 109.46665 * 119.99981 * 2 1 3 29 29 H 0.97005 * 120.00033 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.97130 * 0.02562 * 5 4 3 31 31 H 1.08002 * 119.78818 * 179.97438 * 6 5 4 32 32 H 1.08001 * 119.82339 * 180.30342 * 7 6 5 33 33 H 1.08004 * 120.03855 * 179.74376 * 8 7 6 34 34 H 0.97001 * 119.99311 * 0.02562 * 12 10 9 35 35 H 1.09001 * 109.46414 * 305.00435 * 15 13 12 36 36 H 1.09001 * 109.47244 * 65.00190 * 15 13 12 37 37 H 1.09002 * 109.47233 * 185.00610 * 15 13 12 38 38 H 0.97002 * 120.00389 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 3.3837 1.6349 0.0005 5 6 4.2889 0.5870 -0.1148 6 6 5.6448 0.8417 -0.1135 7 6 6.1148 2.1410 -0.0038 8 6 5.2330 3.1923 0.1169 9 6 3.8566 2.9511 0.1177 10 6 2.9072 4.0722 0.2403 11 8 1.7125 3.8719 0.1330 12 7 3.3631 5.3194 0.4714 13 6 2.4196 6.4333 0.5937 14 1 1.5076 6.0854 1.0788 15 6 2.0832 6.9721 -0.7982 16 6 3.0412 7.5296 1.4200 17 1 4.1014 7.7232 1.3506 18 6 2.2563 8.2855 2.2648 19 7 2.8120 9.1743 3.0591 20 14 0.4037 8.0473 2.2812 21 1 0.0362 7.0976 3.3621 22 1 -0.2613 9.3530 2.5225 23 1 -0.0369 7.5019 0.9721 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3880 2.1185 -0.0004 30 1 3.9307 -0.4278 -0.2056 31 1 6.3445 0.0238 -0.2030 32 1 7.1782 2.3298 -0.0087 33 1 5.6049 4.2024 0.2062 34 1 4.3160 5.4793 0.5566 35 1 3.0042 7.2375 -1.3173 36 1 1.5537 6.2069 -1.3658 37 1 1.4522 7.8558 -0.7030 38 1 2.2599 9.7058 3.6537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062820339.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:57 Heat of formation + Delta-G solvation = -36.155632 kcal Electronic energy + Delta-G solvation = -19588.757949 eV Core-core repulsion = 16622.828063 eV Total energy + Delta-G solvation = -2965.929886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.33694 -39.37875 -37.18239 -36.52370 -34.42706 -32.72570 -32.29827 -30.84384 -28.84628 -27.33155 -24.99842 -24.34557 -22.43843 -22.22988 -21.15918 -19.58785 -18.37371 -17.77507 -17.34285 -16.55631 -16.36856 -16.09614 -15.67732 -15.46356 -15.23262 -14.70599 -14.59109 -14.38634 -14.15051 -13.79088 -13.26278 -13.20140 -13.13037 -12.84552 -12.72151 -12.69989 -12.50374 -12.37352 -11.98818 -11.86661 -11.22959 -10.95500 -10.90105 -10.66154 -10.03213 -9.72108 -8.40879 -8.31679 -6.46946 0.08341 0.73910 1.27041 1.32072 1.44129 2.02003 2.25935 2.45668 2.63451 3.03694 3.08218 3.92937 3.94741 4.10687 4.19878 4.25941 4.41899 4.48581 4.54811 4.59345 4.70646 4.73136 4.80119 4.91928 5.01352 5.04083 5.08704 5.18983 5.25623 5.36352 5.45202 5.52123 5.68517 5.70603 5.98495 6.10178 6.49251 6.57114 6.80992 6.90447 7.19412 7.46133 8.74146 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.020780 B = 0.005784 C = 0.004852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.151522 B = 4839.957568 C = 5769.701566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.109 3.891 3 N -0.743 5.743 4 C 0.254 3.746 5 C -0.218 4.218 6 C -0.037 4.037 7 C -0.194 4.194 8 C -0.043 4.043 9 C -0.252 4.252 10 C 0.553 3.447 11 O -0.600 6.600 12 N -0.698 5.698 13 C 0.236 3.764 14 H 0.030 0.970 15 C -0.142 4.142 16 C -0.528 4.528 17 H 0.056 0.944 18 C 0.033 3.967 19 N -0.929 5.929 20 Si 0.926 3.074 21 H -0.279 1.279 22 H -0.274 1.274 23 H -0.250 1.250 24 H 0.098 0.902 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.408 0.592 30 H 0.146 0.854 31 H 0.160 0.840 32 H 0.149 0.851 33 H 0.130 0.870 34 H 0.403 0.597 35 H 0.057 0.943 36 H 0.034 0.966 37 H 0.052 0.948 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.854 -19.941 -7.399 21.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.015 4.015 3 N -0.381 5.381 4 C 0.144 3.856 5 C -0.240 4.240 6 C -0.056 4.056 7 C -0.214 4.214 8 C -0.062 4.062 9 C -0.261 4.261 10 C 0.344 3.656 11 O -0.485 6.485 12 N -0.346 5.346 13 C 0.132 3.868 14 H 0.048 0.952 15 C -0.200 4.200 16 C -0.567 4.567 17 H 0.074 0.926 18 C -0.168 4.168 19 N -0.568 5.568 20 Si 0.751 3.249 21 H -0.205 1.205 22 H -0.199 1.199 23 H -0.173 1.173 24 H 0.117 0.883 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.255 0.745 30 H 0.164 0.836 31 H 0.177 0.823 32 H 0.167 0.833 33 H 0.147 0.853 34 H 0.239 0.761 35 H 0.076 0.924 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.849 -20.041 -7.329 21.419 hybrid contribution -0.705 1.001 0.454 1.305 sum 1.144 -19.041 -6.875 20.276 Atomic orbital electron populations 1.21945 0.93977 1.03963 1.01903 1.21555 0.95429 0.82574 1.01924 1.46002 1.04296 1.09843 1.77963 1.18144 0.85478 0.92183 0.89832 1.20927 0.93218 0.98015 1.11887 1.21479 0.94744 0.97484 0.91867 1.21131 1.00468 0.92283 1.07522 1.21303 0.90814 1.00533 0.93568 1.19449 0.94488 0.91808 1.20314 1.18708 0.87826 0.83520 0.75510 1.90286 1.18350 1.83934 1.55912 1.46239 1.11298 1.06866 1.70179 1.18870 0.89599 0.84284 0.94038 0.95180 1.22142 1.00791 0.99619 0.97477 1.21168 0.96223 1.15757 1.23514 0.92625 1.25615 1.02731 0.94677 0.93766 1.69989 1.37619 1.25024 1.24127 0.86055 0.81141 0.77936 0.79783 1.20472 1.19901 1.17338 0.88322 0.93305 0.92764 0.90773 0.91436 0.74507 0.83598 0.82267 0.83315 0.85259 0.76093 0.92370 0.94679 0.92901 0.92005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 10.03 71.98 0.72 -2.24 16 2 C 0.11 2.23 5.66 86.38 0.49 2.72 16 3 N -0.74 -22.37 5.59 -338.82 -1.89 -24.26 16 4 C 0.25 7.70 6.65 38.71 0.26 7.96 16 5 C -0.22 -4.89 9.30 22.38 0.21 -4.68 16 6 C -0.04 -0.69 10.03 22.29 0.22 -0.47 16 7 C -0.19 -4.12 10.02 22.24 0.22 -3.90 16 8 C -0.04 -1.19 9.52 22.52 0.21 -0.98 16 9 C -0.25 -8.57 5.89 -19.98 -0.12 -8.69 16 10 C 0.55 23.00 7.71 86.66 0.67 23.67 16 11 O -0.60 -27.70 13.31 -4.06 -0.05 -27.75 16 12 N -0.70 -29.75 5.02 -449.37 -2.25 -32.01 16 13 C 0.24 11.51 2.10 44.25 0.09 11.60 16 14 H 0.03 1.60 5.03 -2.38 -0.01 1.59 16 15 C -0.14 -6.24 9.17 71.98 0.66 -5.58 16 16 C -0.53 -29.18 9.05 25.60 0.23 -28.94 16 17 H 0.06 3.26 8.06 -2.91 -0.02 3.24 16 18 C 0.03 1.86 5.47 84.65 0.46 2.32 16 19 N -0.93 -55.98 13.96 21.45 0.30 -55.68 16 20 Si 0.93 44.91 26.57 68.60 1.82 46.73 16 21 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 22 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.25 -11.71 6.19 99.48 0.62 -11.09 16 24 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.07 1.26 7.73 -2.39 -0.02 1.24 16 28 H 0.07 1.24 8.12 -2.38 -0.02 1.22 16 29 H 0.41 14.66 4.98 -94.61 -0.47 14.19 16 30 H 0.15 2.49 6.72 -2.91 -0.02 2.47 16 31 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 33 H 0.13 3.33 6.45 -2.91 -0.02 3.31 16 34 H 0.40 15.40 6.66 -92.71 -0.62 14.78 16 35 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.05 2.32 7.30 -2.39 -0.02 2.30 16 38 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -68.34 311.62 2.15 -66.19 By element: Atomic # 1 Polarization: 34.09 SS G_CDS: -0.10 Total: 33.99 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 4.33 Total: -7.22 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -3.85 Total: -111.94 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.75 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.82 Total: 46.73 kcal Total: -68.34 2.15 -66.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062820339.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.031 kcal (2) G-P(sol) polarization free energy of solvation -68.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds