Wall clock time and date at job start Mon Mar 30 2020 06:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38352 * 119.46497 * 2 1 4 4 C 1.38354 * 119.30745 * 179.72595 * 3 2 1 5 5 C 1.40033 * 118.28680 * 0.51087 * 4 3 2 6 6 C 1.47838 * 120.55644 * 179.73975 * 5 4 3 7 7 O 1.21554 * 119.99670 * 230.84755 * 6 5 4 8 8 N 1.34765 * 120.00253 * 50.85054 * 6 5 4 9 9 C 1.46501 * 120.00305 * 355.61874 * 8 6 5 10 10 C 1.46503 * 120.00035 * 175.62376 * 8 6 5 11 11 H 1.09000 * 109.46879 * 359.97438 * 10 8 6 12 12 C 1.53001 * 109.47107 * 239.99921 * 10 8 6 13 13 C 1.50695 * 109.47233 * 119.99866 * 10 8 6 14 14 H 1.08003 * 120.00484 * 359.97438 * 13 10 8 15 15 C 1.37878 * 120.00123 * 180.02562 * 13 10 8 16 16 N 1.31518 * 119.99985 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 120.00047 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47198 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46962 * 119.99955 * 17 15 13 20 20 H 1.48509 * 109.46772 * 239.99569 * 17 15 13 21 21 C 1.39519 * 118.87948 * 359.46914 * 5 4 3 22 22 C 1.50695 * 119.71636 * 180.27264 * 21 5 4 23 23 N 1.31693 * 120.56775 * 0.29320 * 21 5 4 24 24 H 1.09002 * 109.46985 * 270.02328 * 1 2 3 25 25 H 1.08997 * 109.46806 * 30.02390 * 1 2 3 26 26 H 1.08999 * 109.47224 * 150.02633 * 1 2 3 27 27 H 1.08004 * 120.34220 * 359.97361 * 3 2 1 28 28 H 1.07998 * 120.86087 * 180.25279 * 4 3 2 29 29 H 1.08999 * 109.47320 * 275.21770 * 9 8 6 30 30 H 1.09005 * 109.46858 * 35.22244 * 9 8 6 31 31 H 1.09001 * 109.47309 * 155.21324 * 9 8 6 32 32 H 1.09000 * 109.47052 * 299.99650 * 12 10 8 33 33 H 1.09003 * 109.47079 * 180.02562 * 12 10 8 34 34 H 1.09004 * 109.47051 * 59.99806 * 12 10 8 35 35 H 0.96996 * 119.99728 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.47371 * 84.14152 * 22 21 5 37 37 H 1.09002 * 109.47257 * 204.14465 * 22 21 5 38 38 H 1.09000 * 109.47196 * 324.14607 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0058 5 6 4.2313 -0.0341 0.0004 6 6 5.7083 -0.0967 0.0004 7 8 6.2875 -0.7829 -0.8189 8 7 6.4126 0.6069 0.9087 9 6 5.7210 1.5080 1.8339 10 6 7.8700 0.4709 0.9709 11 1 8.2014 -0.2378 0.2120 12 6 8.2761 -0.0381 2.3555 13 6 8.5108 1.8117 0.7208 14 1 7.8942 2.6785 0.5337 15 6 9.8843 1.9318 0.7297 16 7 10.6352 0.8762 0.9569 17 14 10.6786 3.5940 0.4203 18 1 9.6224 4.6128 0.1935 19 1 11.4942 3.9800 1.5997 20 1 11.5508 3.5103 -0.7788 21 6 3.4716 -1.2044 0.0009 22 6 4.1626 -2.5435 0.0014 23 7 2.1559 -1.1487 0.0004 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6443 2.1381 -0.0004 28 1 4.1275 2.1263 0.0100 29 1 5.5677 2.4744 1.3536 30 1 4.7559 1.0797 2.1048 31 1 6.3246 1.6401 2.7319 32 1 7.9446 0.6704 3.1146 33 1 9.3605 -0.1389 2.4019 34 1 7.8126 -1.0079 2.5364 35 1 11.6015 0.9608 0.9635 36 1 4.4225 -2.8180 1.0239 37 1 3.4959 -3.2966 -0.4186 38 1 5.0695 -2.4847 -0.6005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063094595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:39 Heat of formation + Delta-G solvation = -4.166801 kcal Electronic energy + Delta-G solvation = -19903.965875 eV Core-core repulsion = 16939.423128 eV Total energy + Delta-G solvation = -2964.542747 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.59457 -38.63219 -35.48376 -33.55118 -33.29073 -32.32203 -29.49265 -28.98858 -27.06234 -26.15508 -25.24161 -22.85230 -22.26916 -21.00592 -18.82260 -16.87565 -16.71696 -16.04334 -15.70804 -15.38195 -14.77938 -14.47491 -14.11769 -13.82129 -13.40090 -13.20303 -12.93158 -12.64516 -12.40219 -12.30122 -11.97500 -11.91136 -11.78786 -11.59090 -11.45757 -11.10226 -10.84501 -10.74363 -10.28843 -10.21276 -9.73998 -9.63431 -9.20335 -8.97245 -8.65599 -8.46124 -7.66926 -6.10630 -4.18677 0.92736 1.28614 3.23111 3.24262 3.32225 3.34897 3.73894 3.90922 4.21746 4.37432 4.68006 4.81460 4.96319 5.07208 5.20910 5.40184 5.41568 5.44451 5.61531 5.68923 5.77293 5.83923 5.89111 5.97828 6.10524 6.21914 6.23594 6.37271 6.69752 6.74360 6.78403 7.00206 7.36318 7.45716 7.67236 7.96266 8.00746 8.14553 8.43752 8.77353 8.94990 9.47888 10.94781 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032407 B = 0.005146 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.794045 B = 5440.129870 C = 5876.344329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.136 3.864 3 C -0.187 4.187 4 C -0.040 4.040 5 C -0.173 4.173 6 C 0.553 3.447 7 O -0.540 6.540 8 N -0.583 5.583 9 C 0.085 3.915 10 C 0.257 3.743 11 H 0.065 0.935 12 C -0.148 4.148 13 C -0.525 4.525 14 H 0.059 0.941 15 C 0.065 3.935 16 N -0.887 5.887 17 Si 0.899 3.101 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.179 3.821 22 C -0.120 4.120 23 N -0.490 5.490 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.136 0.864 28 H 0.142 0.858 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.030 0.970 33 H 0.095 0.905 34 H 0.012 0.988 35 H 0.263 0.737 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.339 0.364 1.784 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.002 4.002 3 C -0.207 4.207 4 C -0.066 4.066 5 C -0.178 4.178 6 C 0.338 3.662 7 O -0.419 6.419 8 N -0.313 5.313 9 C -0.059 4.059 10 C 0.157 3.843 11 H 0.083 0.917 12 C -0.206 4.206 13 C -0.564 4.564 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.525 5.525 17 Si 0.727 3.273 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C 0.040 3.960 22 C -0.177 4.177 23 N -0.201 5.201 24 H 0.096 0.904 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.154 0.846 28 H 0.160 0.840 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.114 0.886 34 H 0.031 0.969 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.267 -0.809 1.395 16.347 hybrid contribution 0.937 1.963 -0.039 2.175 sum -15.330 1.153 1.355 15.433 Atomic orbital electron populations 1.20716 0.88852 1.03400 1.03023 1.21382 0.96947 0.88374 0.93472 1.21821 0.94491 0.99233 1.05121 1.21851 0.94330 0.97740 0.92715 1.21021 0.95860 0.94694 1.06203 1.17997 0.85500 0.80724 0.81948 1.90710 1.70739 1.42318 1.38160 1.48217 1.09906 1.40778 1.32381 1.21677 0.96360 0.93219 0.94612 1.19019 0.72133 0.97862 0.95271 0.91681 1.22111 1.04544 0.96306 0.97634 1.21328 0.91549 0.94212 1.49303 0.92240 1.24891 0.97077 0.96922 0.94854 1.69883 1.05102 1.28585 1.48952 0.86432 0.79315 0.83689 0.77902 1.19844 1.20911 1.20877 1.21310 0.88486 0.95166 0.91022 1.20994 1.01523 0.91509 1.03696 1.67400 1.09089 1.29094 1.14507 0.90382 0.90715 0.90492 0.84572 0.84050 0.93314 0.93097 0.90385 0.95059 0.88637 0.96882 0.92689 0.90468 0.90599 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.16 36.00 0.37 -0.52 16 2 C 0.14 1.73 6.78 -82.51 -0.56 1.17 16 3 C -0.19 -2.24 9.72 -39.50 -0.38 -2.62 16 4 C -0.04 -0.58 7.99 -38.87 -0.31 -0.89 16 5 C -0.17 -3.01 4.82 -104.82 -0.51 -3.51 16 6 C 0.55 11.74 6.71 -12.34 -0.08 11.65 16 7 O -0.54 -13.30 14.30 5.32 0.08 -13.22 16 8 N -0.58 -12.46 2.75 -176.38 -0.49 -12.94 16 9 C 0.09 1.45 8.33 59.85 0.50 1.95 16 10 C 0.26 6.49 2.63 -69.08 -0.18 6.31 16 11 H 0.07 1.90 6.91 -51.93 -0.36 1.54 16 12 C -0.15 -3.47 8.96 37.16 0.33 -3.14 16 13 C -0.53 -14.03 8.37 -34.44 -0.29 -14.32 16 14 H 0.06 1.57 7.65 -52.48 -0.40 1.17 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -24.80 11.32 55.43 0.63 -24.17 16 17 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 C 0.18 2.97 6.82 -82.18 -0.56 2.41 16 22 C -0.12 -1.86 9.66 36.00 0.35 -1.51 16 23 N -0.49 -7.50 10.17 -5.42 -0.06 -7.56 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.14 1.18 8.06 -52.48 -0.42 0.75 16 28 H 0.14 1.88 6.58 -52.49 -0.35 1.54 16 29 H 0.05 0.77 7.17 -51.93 -0.37 0.39 16 30 H 0.05 0.75 6.37 -51.93 -0.33 0.42 16 31 H 0.08 1.33 6.44 -51.93 -0.33 1.00 16 32 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 33 H 0.10 2.47 6.07 -51.93 -0.32 2.15 16 34 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.10 1.81 5.81 -51.93 -0.30 1.51 16 LS Contribution 310.44 15.07 4.68 4.68 Total: -1.00 -31.02 310.44 -6.80 -37.82 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -5.20 Total: 0.95 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -1.42 Total: -1.38 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: 0.09 Total: -44.67 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.02 -6.80 -37.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.655 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds