Wall clock time and date at job start Mon Mar 30 2020 06:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38352 * 119.46497 * 2 1 4 4 C 1.38354 * 119.30745 * 179.72595 * 3 2 1 5 5 C 1.40033 * 118.28680 * 0.51087 * 4 3 2 6 6 C 1.47838 * 120.55644 * 179.73975 * 5 4 3 7 7 O 1.21554 * 119.99670 * 230.84755 * 6 5 4 8 8 N 1.34765 * 120.00253 * 50.85054 * 6 5 4 9 9 C 1.46501 * 120.00305 * 355.61874 * 8 6 5 10 10 C 1.46503 * 120.00035 * 175.62376 * 8 6 5 11 11 H 1.09000 * 109.46879 * 359.97438 * 10 8 6 12 12 C 1.53001 * 109.47107 * 239.99921 * 10 8 6 13 13 C 1.50695 * 109.47233 * 119.99866 * 10 8 6 14 14 H 1.08003 * 120.00484 * 359.97438 * 13 10 8 15 15 C 1.37878 * 120.00123 * 180.02562 * 13 10 8 16 16 N 1.31518 * 119.99985 * 359.97438 * 15 13 10 17 17 Si 1.86804 * 120.00047 * 180.02562 * 15 13 10 18 18 H 1.48495 * 109.47198 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.46962 * 119.99955 * 17 15 13 20 20 H 1.48509 * 109.46772 * 239.99569 * 17 15 13 21 21 C 1.39519 * 118.87948 * 359.46914 * 5 4 3 22 22 C 1.50695 * 119.71636 * 180.27264 * 21 5 4 23 23 N 1.31693 * 120.56775 * 0.29320 * 21 5 4 24 24 H 1.09002 * 109.46985 * 270.02328 * 1 2 3 25 25 H 1.08997 * 109.46806 * 30.02390 * 1 2 3 26 26 H 1.08999 * 109.47224 * 150.02633 * 1 2 3 27 27 H 1.08004 * 120.34220 * 359.97361 * 3 2 1 28 28 H 1.07998 * 120.86087 * 180.25279 * 4 3 2 29 29 H 1.08999 * 109.47320 * 275.21770 * 9 8 6 30 30 H 1.09005 * 109.46858 * 35.22244 * 9 8 6 31 31 H 1.09001 * 109.47309 * 155.21324 * 9 8 6 32 32 H 1.09000 * 109.47052 * 299.99650 * 12 10 8 33 33 H 1.09003 * 109.47079 * 180.02562 * 12 10 8 34 34 H 1.09004 * 109.47051 * 59.99806 * 12 10 8 35 35 H 0.96996 * 119.99728 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.47371 * 84.14152 * 22 21 5 37 37 H 1.09002 * 109.47257 * 204.14465 * 22 21 5 38 38 H 1.09000 * 109.47196 * 324.14607 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0058 5 6 4.2313 -0.0341 0.0004 6 6 5.7083 -0.0967 0.0004 7 8 6.2875 -0.7829 -0.8189 8 7 6.4126 0.6069 0.9087 9 6 5.7210 1.5080 1.8339 10 6 7.8700 0.4709 0.9709 11 1 8.2014 -0.2378 0.2120 12 6 8.2761 -0.0381 2.3555 13 6 8.5108 1.8117 0.7208 14 1 7.8942 2.6785 0.5337 15 6 9.8843 1.9318 0.7297 16 7 10.6352 0.8762 0.9569 17 14 10.6786 3.5940 0.4203 18 1 9.6224 4.6128 0.1935 19 1 11.4942 3.9800 1.5997 20 1 11.5508 3.5103 -0.7788 21 6 3.4716 -1.2044 0.0009 22 6 4.1626 -2.5435 0.0014 23 7 2.1559 -1.1487 0.0004 24 1 -0.3633 0.0004 1.0277 25 1 -0.3633 0.8898 -0.5142 26 1 -0.3633 -0.8902 -0.5134 27 1 1.6443 2.1381 -0.0004 28 1 4.1275 2.1263 0.0100 29 1 5.5677 2.4744 1.3536 30 1 4.7559 1.0797 2.1048 31 1 6.3246 1.6401 2.7319 32 1 7.9446 0.6704 3.1146 33 1 9.3605 -0.1389 2.4019 34 1 7.8126 -1.0079 2.5364 35 1 11.6015 0.9608 0.9635 36 1 4.4225 -2.8180 1.0239 37 1 3.4959 -3.2966 -0.4186 38 1 5.0695 -2.4847 -0.6005 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063094595.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:38 Heat of formation + Delta-G solvation = -23.584429 kcal Electronic energy + Delta-G solvation = -19904.807886 eV Core-core repulsion = 16939.423128 eV Total energy + Delta-G solvation = -2965.384758 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 262.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.85025 -40.14388 -37.26211 -35.06535 -34.56464 -33.76448 -31.28058 -30.01095 -28.30119 -27.61683 -27.27805 -24.14553 -23.47525 -22.49144 -20.44523 -18.62115 -18.15700 -17.64730 -17.28706 -16.59652 -16.37271 -15.82113 -15.57173 -15.16148 -14.61546 -14.54197 -14.31374 -14.12636 -13.76569 -13.48812 -13.25063 -13.16508 -13.01987 -12.98149 -12.91628 -12.75746 -12.70435 -12.57443 -12.20305 -12.12211 -11.20060 -11.04549 -10.78961 -10.56348 -10.38338 -9.78022 -9.40519 -8.15592 -6.32156 -0.22288 0.19435 1.40912 1.42841 1.53833 1.72052 2.21488 2.44854 2.68111 3.12781 3.17452 3.54499 3.73641 3.74805 4.08409 4.31213 4.39814 4.53861 4.57545 4.60083 4.64467 4.72657 4.77086 4.85256 4.86355 4.95064 5.01140 5.04262 5.07781 5.18128 5.25687 5.43652 5.57161 5.64228 5.69512 5.99432 6.13526 6.69705 6.74776 6.91583 7.22640 7.41710 8.89190 Molecular weight = 262.14amu Principal moments of inertia in cm(-1) A = 0.032407 B = 0.005146 C = 0.004764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.794045 B = 5440.129870 C = 5876.344329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.136 3.864 3 C -0.171 4.171 4 C -0.041 4.041 5 C -0.198 4.198 6 C 0.549 3.451 7 O -0.589 6.589 8 N -0.589 5.589 9 C 0.085 3.915 10 C 0.261 3.739 11 H 0.012 0.988 12 C -0.133 4.133 13 C -0.538 4.538 14 H 0.062 0.938 15 C 0.016 3.984 16 N -0.917 5.917 17 Si 0.966 3.034 18 H -0.264 1.264 19 H -0.274 1.274 20 H -0.286 1.286 21 C 0.165 3.835 22 C -0.116 4.116 23 N -0.505 5.505 24 H 0.095 0.905 25 H 0.103 0.897 26 H 0.074 0.926 27 H 0.181 0.819 28 H 0.152 0.848 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.070 0.930 34 H 0.020 0.980 35 H 0.265 0.735 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.224 2.720 2.482 19.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.002 4.002 3 C -0.190 4.190 4 C -0.066 4.066 5 C -0.203 4.203 6 C 0.337 3.663 7 O -0.472 6.472 8 N -0.318 5.318 9 C -0.058 4.058 10 C 0.159 3.841 11 H 0.030 0.970 12 C -0.192 4.192 13 C -0.576 4.576 14 H 0.080 0.920 15 C -0.184 4.184 16 N -0.556 5.556 17 Si 0.791 3.209 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.212 1.212 21 C 0.027 3.973 22 C -0.173 4.173 23 N -0.216 5.216 24 H 0.114 0.886 25 H 0.122 0.878 26 H 0.093 0.907 27 H 0.198 0.802 28 H 0.170 0.830 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.039 0.961 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.186 1.562 2.118 19.365 hybrid contribution 1.704 1.211 -0.278 2.108 sum -17.482 2.773 1.840 17.796 Atomic orbital electron populations 1.20868 0.85581 1.04789 1.04509 1.22216 0.99036 0.87902 0.91063 1.22260 0.93310 1.00817 1.02630 1.22035 0.95638 0.96708 0.92260 1.20703 0.93063 0.96619 1.09930 1.18617 0.87316 0.79514 0.80874 1.90673 1.72262 1.44193 1.40046 1.48185 1.08624 1.41716 1.33324 1.21880 0.96989 0.93228 0.93663 1.18627 0.74766 0.96242 0.94422 0.96992 1.21899 1.02892 0.97157 0.97229 1.21574 0.92032 0.94624 1.49375 0.92018 1.25733 0.97657 1.00449 0.94550 1.70024 1.05343 1.30626 1.49593 0.85392 0.78358 0.79481 0.77681 1.18817 1.19947 1.21245 1.21321 0.89276 0.94936 0.91753 1.20896 1.00623 0.92309 1.03510 1.67480 1.08083 1.30710 1.15294 0.88615 0.87802 0.90701 0.80151 0.83038 0.91671 0.90525 0.90538 0.93265 0.91101 0.96081 0.92604 0.90029 0.89004 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.16 71.23 0.72 -0.54 16 2 C 0.14 2.95 6.78 42.57 0.29 3.24 16 3 C -0.17 -3.35 9.72 22.32 0.22 -3.13 16 4 C -0.04 -1.07 7.99 22.73 0.18 -0.88 16 5 C -0.20 -6.83 4.82 -19.99 -0.10 -6.93 16 6 C 0.55 24.14 6.71 86.79 0.58 24.72 16 7 O -0.59 -31.04 14.30 -3.89 -0.06 -31.10 16 8 N -0.59 -25.63 2.75 -830.23 -2.29 -27.91 16 9 C 0.08 2.75 8.33 127.77 1.06 3.82 16 10 C 0.26 13.69 2.63 44.24 0.12 13.80 16 11 H 0.01 0.76 6.91 -2.39 -0.02 0.74 16 12 C -0.13 -6.44 8.96 71.98 0.64 -5.79 16 13 C -0.54 -29.14 8.37 25.60 0.21 -28.92 16 14 H 0.06 3.24 7.65 -2.91 -0.02 3.21 16 15 C 0.02 0.86 5.30 84.65 0.45 1.31 16 16 N -0.92 -52.68 11.32 21.45 0.24 -52.44 16 17 Si 0.97 42.77 29.54 68.60 2.03 44.80 16 18 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 20 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 21 C 0.17 5.44 6.82 42.89 0.29 5.74 16 22 C -0.12 -3.74 9.66 71.23 0.69 -3.06 16 23 N -0.50 -14.51 10.17 -171.06 -1.74 -16.25 16 24 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 25 H 0.10 0.75 8.07 -2.39 -0.02 0.73 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 28 H 0.15 3.60 6.58 -2.91 -0.02 3.58 16 29 H 0.06 1.90 7.17 -2.39 -0.02 1.88 16 30 H 0.08 2.09 6.37 -2.38 -0.02 2.08 16 31 H 0.08 2.50 6.44 -2.39 -0.02 2.48 16 32 H 0.05 2.14 6.66 -2.39 -0.02 2.13 16 33 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 34 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.07 2.79 5.81 -2.39 -0.01 2.78 16 Total: -1.00 -70.94 310.44 4.61 -66.32 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.06 Total: 13.21 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 5.37 Total: 3.37 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -3.78 Total: -96.60 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -0.06 Total: -31.10 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -70.94 4.61 -66.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063094595.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.740 kcal (2) G-P(sol) polarization free energy of solvation -70.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds